Wall clock time and date at job start Sat Apr 11 2020 06:05:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 110.91386 * 2 1 4 4 C 1.54907 * 111.00149 * 236.10454 * 2 1 3 5 5 N 1.47430 * 104.83016 * 204.91642 * 4 2 1 6 6 C 1.34777 * 125.64775 * 204.09391 * 5 4 2 7 7 O 1.21589 * 120.00051 * 354.82082 * 6 5 4 8 8 C 1.47536 * 119.99741 * 174.82664 * 6 5 4 9 9 C 1.39584 * 120.21725 * 312.81569 * 8 6 5 10 10 C 1.37860 * 119.96481 * 179.76942 * 9 8 6 11 11 C 1.38574 * 120.41387 * 0.51153 * 10 9 8 12 12 C 1.37977 * 120.44142 * 359.73990 * 11 10 9 13 13 C 1.39243 * 120.02273 * 0.02562 * 12 11 10 14 14 C 1.48174 * 120.20287 * 180.02562 * 13 12 11 15 15 C 1.40981 * 126.25157 * 130.00256 * 14 13 12 16 16 N 1.30620 * 108.06488 * 179.97438 * 15 14 13 17 17 N 1.40006 * 108.57736 * 359.97438 * 16 15 14 18 18 H 0.96995 * 125.86663 * 179.97438 * 17 16 15 19 19 C 1.34695 * 108.26538 * 359.73192 * 17 16 15 20 20 C 1.47026 * 108.70220 * 24.12434 * 5 4 2 21 21 C 1.54324 * 107.27013 * 358.94501 * 20 5 4 22 22 H 1.08991 * 110.72216 * 96.35085 * 21 20 5 23 23 N 1.46507 * 110.71730 * 219.44187 * 21 20 5 24 24 C 1.36929 * 120.00156 * 273.54814 * 23 21 20 25 25 H 1.08003 * 120.00020 * 359.97438 * 24 23 21 26 26 C 1.38806 * 120.00243 * 180.02562 * 24 23 21 27 27 N 1.31625 * 119.99863 * 0.02562 * 26 24 23 28 28 Si 1.86802 * 120.00179 * 180.27215 * 26 24 23 29 29 H 1.48501 * 109.47173 * 179.72545 * 28 26 24 30 30 H 1.48497 * 109.47020 * 299.72530 * 28 26 24 31 31 H 1.48501 * 109.46868 * 59.72638 * 28 26 24 32 32 H 1.09002 * 109.47362 * 296.09788 * 1 2 3 33 33 H 1.09003 * 109.47460 * 56.09696 * 1 2 3 34 34 H 1.09000 * 109.47276 * 176.09474 * 1 2 3 35 35 H 1.08998 * 110.37148 * 86.07572 * 4 2 1 36 36 H 1.09004 * 110.45883 * 323.79539 * 4 2 1 37 37 H 1.08001 * 120.01786 * 0.02562 * 9 8 6 38 38 H 1.07997 * 119.79689 * 180.24762 * 10 9 8 39 39 H 1.07993 * 119.78096 * 179.76503 * 11 10 9 40 40 H 1.07998 * 119.98771 * 179.97438 * 12 11 10 41 41 H 1.08000 * 125.97138 * 359.97438 * 15 14 13 42 42 H 1.08005 * 126.20420 * 180.26488 * 19 17 16 43 43 H 1.09000 * 109.87951 * 239.52259 * 20 5 4 44 44 H 1.09003 * 110.00956 * 118.43262 * 20 5 4 45 45 H 0.97006 * 119.99791 * 93.54581 * 23 21 20 46 46 H 0.97005 * 119.99752 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9191 1.0182 0.0000 4 6 2.0851 -0.8065 -1.2004 5 7 3.4271 -1.2430 -0.7735 6 6 4.4476 -1.5614 -1.5942 7 8 4.2737 -1.5912 -2.7972 8 6 5.7757 -1.8741 -1.0328 9 6 6.3410 -1.0452 -0.0624 10 6 7.5802 -1.3449 0.4620 11 6 8.2761 -2.4604 0.0244 12 6 7.7356 -3.2885 -0.9379 13 6 6.4831 -3.0057 -1.4766 14 6 5.8986 -3.8926 -2.5097 15 6 4.6009 -4.4435 -2.4983 16 7 4.4586 -5.1672 -3.5764 17 7 5.6475 -5.1082 -4.3134 18 1 5.8155 -5.5551 -5.1577 19 6 6.5160 -4.3199 -3.6511 20 6 3.4674 -1.2741 0.6959 21 6 2.0861 -0.8080 1.2021 22 1 1.4479 -1.6632 1.4238 23 7 2.2286 0.0495 2.3815 24 6 2.3034 -0.5094 3.6293 25 1 2.2569 -1.5823 3.7442 26 6 2.4379 0.3030 4.7467 27 7 2.4931 1.6106 4.6069 28 14 2.5476 -0.4598 6.4484 29 1 2.6925 0.6140 7.4638 30 1 1.3125 -1.2372 6.7229 31 1 3.7250 -1.3626 6.5111 32 1 -0.3634 0.4521 0.9229 33 1 -0.3634 0.5732 -0.8529 34 1 -0.3634 -1.0253 -0.0700 35 1 2.1558 -0.1718 -2.0837 36 1 1.4523 -1.6703 -1.4044 37 1 5.8061 -0.1718 0.2804 38 1 8.0133 -0.7039 1.2156 39 1 9.2478 -2.6834 0.4395 40 1 8.2845 -4.1557 -1.2739 41 1 3.8547 -4.2934 -1.7321 42 1 7.5198 -4.0730 -3.9640 43 1 4.2426 -0.5998 1.0598 44 1 3.6662 -2.2884 1.0422 45 1 2.2700 1.0131 2.2784 46 1 2.5874 2.1783 5.3878 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001054718788.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:59 Heat of formation + Delta-G solvation = 65.967067 kcal Electronic energy + Delta-G solvation = -29599.845276 eV Core-core repulsion = 25683.512141 eV Total energy + Delta-G solvation = -3916.333136 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.24343 -41.24195 -39.60699 -38.58371 -35.82846 -34.05733 -33.51751 -32.60867 -32.30693 -31.84222 -29.53231 -29.08691 -27.51844 -25.91447 -24.52150 -24.06415 -22.89505 -22.55288 -21.49046 -21.19868 -20.46776 -19.05008 -18.97504 -18.24415 -17.33051 -17.14685 -16.55402 -16.50530 -15.89554 -15.60166 -15.36934 -15.33623 -15.23684 -15.01068 -14.56928 -14.51241 -14.35199 -14.07489 -13.95878 -13.69775 -13.47705 -13.28753 -13.00351 -12.87289 -12.79542 -12.69398 -12.26018 -12.17920 -12.04582 -12.00803 -11.73740 -11.65730 -11.40813 -11.04135 -10.86343 -10.64877 -10.24419 -9.90856 -9.57246 -9.04870 -9.02295 -7.91004 -5.20626 0.00331 0.35185 0.97935 1.52554 1.53684 1.59630 1.72049 1.80353 2.01679 2.02401 2.59619 2.88086 3.38350 3.41368 3.63891 3.79657 3.81665 3.90397 3.99622 4.02070 4.19191 4.23104 4.23649 4.36602 4.47246 4.50502 4.53674 4.58165 4.63091 4.68083 4.83345 4.89444 4.92604 4.94748 5.08410 5.11985 5.15888 5.26734 5.33011 5.36439 5.47863 5.54613 5.56772 5.58587 5.60995 6.00994 6.29249 6.41631 6.50501 6.65339 7.12362 7.37531 8.08221 8.33339 9.31491 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.012083 B = 0.003477 C = 0.002992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2316.797933 B = 8050.732899 C = 9356.161772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.102 4.102 3 H 0.073 0.927 4 C 0.119 3.881 5 N -0.609 5.609 6 C 0.573 3.427 7 O -0.565 6.565 8 C -0.142 4.142 9 C -0.094 4.094 10 C -0.132 4.132 11 C -0.087 4.087 12 C -0.115 4.115 13 C 0.033 3.967 14 C -0.221 4.221 15 C 0.068 3.932 16 N -0.326 5.326 17 N -0.462 5.462 18 H 0.455 0.545 19 C 0.098 3.902 20 C 0.088 3.912 21 C 0.172 3.828 22 H 0.067 0.933 23 N -0.720 5.720 24 C -0.241 4.241 25 H 0.077 0.923 26 C -0.066 4.066 27 N -0.966 5.966 28 Si 0.966 3.034 29 H -0.299 1.299 30 H -0.280 1.280 31 H -0.277 1.277 32 H 0.049 0.951 33 H 0.071 0.929 34 H 0.065 0.935 35 H 0.072 0.928 36 H 0.077 0.923 37 H 0.116 0.884 38 H 0.142 0.858 39 H 0.161 0.839 40 H 0.157 0.843 41 H 0.162 0.838 42 H 0.221 0.779 43 H 0.064 0.936 44 H 0.058 0.942 45 H 0.376 0.624 46 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.351 -11.096 -15.291 22.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.122 4.122 3 H 0.091 0.909 4 C -0.004 4.004 5 N -0.342 5.342 6 C 0.364 3.636 7 O -0.445 6.445 8 C -0.145 4.145 9 C -0.112 4.112 10 C -0.150 4.150 11 C -0.105 4.105 12 C -0.133 4.133 13 C 0.031 3.969 14 C -0.233 4.233 15 C -0.119 4.119 16 N -0.149 5.149 17 N -0.171 5.171 18 H 0.302 0.698 19 C -0.052 4.052 20 C -0.038 4.038 21 C 0.062 3.938 22 H 0.084 0.916 23 N -0.359 5.359 24 C -0.372 4.372 25 H 0.095 0.905 26 C -0.259 4.259 27 N -0.616 5.616 28 Si 0.795 3.205 29 H -0.225 1.225 30 H -0.206 1.206 31 H -0.203 1.203 32 H 0.068 0.932 33 H 0.090 0.910 34 H 0.084 0.916 35 H 0.091 0.909 36 H 0.096 0.904 37 H 0.134 0.866 38 H 0.160 0.840 39 H 0.179 0.821 40 H 0.175 0.825 41 H 0.179 0.821 42 H 0.238 0.762 43 H 0.083 0.917 44 H 0.077 0.923 45 H 0.209 0.791 46 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 10.486 -12.016 -16.486 22.937 hybrid contribution 0.309 0.883 1.319 1.617 sum 10.795 -11.132 -15.167 21.691 Atomic orbital electron populations 1.21565 0.92318 1.02596 1.02034 1.22518 0.97515 0.98778 0.93382 0.90858 1.22281 0.82504 0.98383 0.97218 1.48478 1.12300 1.65871 1.07554 1.18202 0.84044 0.76072 0.85310 1.90739 1.84293 1.54108 1.15371 1.19874 0.94915 0.98736 1.00983 1.21327 0.96708 0.98819 0.94364 1.21389 0.94216 0.98871 1.00544 1.21611 1.00599 0.92985 0.95310 1.21441 0.93847 1.00809 0.97218 1.18126 0.93876 0.91197 0.93698 1.18903 0.95609 1.08963 0.99788 1.23766 0.96532 0.95598 0.95973 1.77089 1.05432 1.25382 1.06977 1.46128 1.09634 1.39676 1.21614 0.69784 1.23093 0.97837 0.92579 0.91663 1.23059 1.01767 1.00937 0.78048 1.21397 0.92347 0.93646 0.86412 0.91557 1.42431 1.87124 1.05148 1.01150 1.19541 1.40836 0.92165 0.84671 0.90468 1.25448 1.03493 0.95741 1.01215 1.69800 1.58746 1.03444 1.29591 0.85331 0.78176 0.76858 0.80107 1.22537 1.20599 1.20349 0.93236 0.90980 0.91604 0.90921 0.90436 0.86650 0.84011 0.82143 0.82499 0.82075 0.76241 0.91741 0.92347 0.79137 0.94066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.47 9.31 71.98 0.67 -2.80 16 2 C -0.10 -3.18 3.25 -9.41 -0.03 -3.21 16 3 H 0.07 2.45 8.00 -2.39 -0.02 2.44 16 4 C 0.12 3.55 6.36 86.85 0.55 4.10 16 5 N -0.61 -20.05 3.33 -815.51 -2.71 -22.76 16 6 C 0.57 19.69 6.10 86.70 0.53 20.21 16 7 O -0.57 -22.07 15.54 -4.00 -0.06 -22.13 16 8 C -0.14 -4.27 5.35 -19.91 -0.11 -4.37 16 9 C -0.09 -2.64 8.39 22.51 0.19 -2.45 16 10 C -0.13 -2.94 10.02 22.26 0.22 -2.71 16 11 C -0.09 -1.51 10.02 22.29 0.22 -1.29 16 12 C -0.12 -2.11 9.70 22.45 0.22 -1.89 16 13 C 0.03 0.84 5.78 -19.81 -0.11 0.72 16 14 C -0.22 -5.55 4.54 -20.34 -0.09 -5.65 16 15 C 0.07 1.98 10.15 85.55 0.87 2.85 16 16 N -0.33 -9.04 12.66 -56.39 -0.71 -9.75 16 17 N -0.46 -8.62 7.32 -56.94 -0.42 -9.03 16 18 H 0.46 4.82 8.96 -213.39 -1.91 2.90 16 19 C 0.10 1.73 11.88 83.88 1.00 2.73 16 20 C 0.09 3.05 5.79 86.73 0.50 3.55 16 21 C 0.17 6.36 3.06 46.18 0.14 6.50 16 22 H 0.07 2.46 8.02 -2.39 -0.02 2.44 16 23 N -0.72 -33.56 5.18 -317.34 -1.64 -35.20 16 24 C -0.24 -12.46 9.98 84.03 0.84 -11.63 16 25 H 0.08 3.84 7.83 -2.91 -0.02 3.82 16 26 C -0.07 -3.61 5.50 84.86 0.47 -3.14 16 27 N -0.97 -56.47 13.06 21.65 0.28 -56.18 16 28 Si 0.97 44.19 29.55 68.60 2.03 46.22 16 29 H -0.30 -13.95 7.11 99.48 0.71 -13.25 16 30 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 31 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 32 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 33 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 34 H 0.06 1.62 8.08 -2.39 -0.02 1.60 16 35 H 0.07 2.18 8.09 -2.39 -0.02 2.16 16 36 H 0.08 2.15 7.99 -2.38 -0.02 2.13 16 37 H 0.12 3.55 6.41 -2.91 -0.02 3.53 16 38 H 0.14 2.67 8.06 -2.91 -0.02 2.64 16 39 H 0.16 1.64 8.06 -2.91 -0.02 1.62 16 40 H 0.16 1.84 8.06 -2.91 -0.02 1.82 16 41 H 0.16 4.90 7.91 -2.91 -0.02 4.87 16 42 H 0.22 1.79 8.06 -2.91 -0.02 1.77 16 43 H 0.06 2.43 5.65 -2.39 -0.01 2.42 16 44 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 45 H 0.38 19.07 7.71 -92.70 -0.72 18.35 16 46 H 0.25 14.37 8.31 -92.70 -0.77 13.60 16 Total: -1.00 -71.76 382.74 1.23 -70.52 By element: Atomic # 1 Polarization: 38.40 SS G_CDS: -1.60 Total: 36.80 kcal Atomic # 6 Polarization: -4.55 SS G_CDS: 6.07 Total: 1.52 kcal Atomic # 7 Polarization: -127.73 SS G_CDS: -5.20 Total: -132.93 kcal Atomic # 8 Polarization: -22.07 SS G_CDS: -0.06 Total: -22.13 kcal Atomic # 14 Polarization: 44.19 SS G_CDS: 2.03 Total: 46.22 kcal Total: -71.76 1.23 -70.52 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054718788.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.492 kcal (2) G-P(sol) polarization free energy of solvation -71.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.525 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds