Wall clock time and date at job start Sat Apr 11 2020 06:06:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09006 * 110.88103 * 2 1 4 4 C 1.55132 * 110.93964 * 124.07349 * 2 1 3 5 5 N 1.47420 * 104.71907 * 155.29295 * 4 2 1 6 6 C 1.34778 * 125.65054 * 155.81947 * 5 4 2 7 7 O 1.21688 * 119.99806 * 4.29281 * 6 5 4 8 8 C 1.46697 * 120.00439 * 184.29050 * 6 5 4 9 9 C 1.36711 * 126.85208 * 354.23228 * 8 6 5 10 10 N 1.33324 * 107.83740 * 180.25890 * 9 8 6 11 11 C 1.30872 * 109.73995 * 0.02562 * 10 9 8 12 12 N 1.34736 * 109.13474 * 359.97438 * 11 10 9 13 13 C 1.40120 * 126.50179 * 179.97438 * 12 11 10 14 14 C 1.38852 * 120.06653 * 123.70345 * 13 12 11 15 15 C 1.38116 * 119.92632 * 179.72097 * 14 13 12 16 16 C 1.38280 * 120.07250 * 0.52690 * 15 14 13 17 17 C 1.38281 * 120.13284 * 359.77016 * 16 15 14 18 18 C 1.38119 * 120.06805 * 359.95481 * 17 16 15 19 19 C 1.47025 * 108.70637 * 335.54912 * 5 4 2 20 20 C 1.54330 * 107.26813 * 1.29247 * 19 5 4 21 21 H 1.09003 * 110.71738 * 140.55032 * 20 19 5 22 22 N 1.46495 * 110.71948 * 263.82506 * 20 19 5 23 23 C 1.36934 * 120.00402 * 271.29349 * 22 20 19 24 24 H 1.08001 * 119.99773 * 5.14097 * 23 22 20 25 25 C 1.38810 * 120.00445 * 185.14409 * 23 22 20 26 26 N 1.31616 * 119.99518 * 359.97438 * 25 23 22 27 27 Si 1.86796 * 120.00101 * 179.97438 * 25 23 22 28 28 H 1.48496 * 109.47078 * 60.00142 * 27 25 23 29 29 H 1.48502 * 109.46977 * 180.02562 * 27 25 23 30 30 H 1.48498 * 109.47551 * 300.00155 * 27 25 23 31 31 H 1.08997 * 109.46766 * 183.88491 * 1 2 3 32 32 H 1.09000 * 109.47086 * 303.87803 * 1 2 3 33 33 H 1.09003 * 109.47365 * 63.88067 * 1 2 3 34 34 H 1.08995 * 110.49680 * 36.44869 * 4 2 1 35 35 H 1.09000 * 110.34372 * 274.05495 * 4 2 1 36 36 H 1.07994 * 126.08410 * 0.21858 * 9 8 6 37 37 H 1.07995 * 125.43302 * 180.02562 * 11 10 9 38 38 H 1.07999 * 120.03357 * 359.97164 * 14 13 12 39 39 H 1.08004 * 119.95979 * 180.27291 * 15 14 13 40 40 H 1.08001 * 119.93484 * 179.73855 * 16 15 14 41 41 H 1.08006 * 119.96661 * 179.97438 * 17 16 15 42 42 H 1.08007 * 120.03069 * 180.02562 * 18 17 16 43 43 H 1.09001 * 109.87871 * 120.70443 * 19 5 4 44 44 H 1.08996 * 109.88530 * 241.87283 * 19 5 4 45 45 H 0.97003 * 119.99550 * 91.28772 * 22 20 19 46 46 H 0.97011 * 119.99453 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9185 1.0185 0.0000 4 6 2.0844 -0.8117 1.2001 5 7 3.4280 -1.2420 0.7726 6 6 4.4491 -1.5601 1.5928 7 8 4.2784 -1.5793 2.7975 8 6 5.7661 -1.8833 1.0334 9 6 6.0860 -2.0117 -0.2896 10 7 7.3817 -2.3157 -0.3688 11 6 7.8936 -2.3857 0.8336 12 7 6.9309 -2.1250 1.7394 13 6 7.0808 -2.1036 3.1324 14 6 6.7363 -0.9671 3.8518 15 6 6.8798 -0.9512 5.2254 16 6 7.3763 -2.0616 5.8831 17 6 7.7261 -3.1928 5.1687 18 6 7.5795 -3.2169 3.7955 19 6 3.4679 -1.2730 -0.6968 20 6 2.0861 -0.8075 -1.2025 21 1 2.1915 -0.1693 -2.0799 22 7 1.2273 -1.9574 -1.4963 23 6 1.2483 -2.5273 -2.7412 24 1 1.9564 -2.1834 -3.4807 25 6 0.3595 -3.5469 -3.0529 26 7 -0.5031 -3.9663 -2.1516 27 14 0.3877 -4.3238 -4.7514 28 1 1.7232 -4.9239 -4.9991 29 1 -0.6527 -5.3806 -4.8297 30 1 0.1145 -3.2842 -5.7760 31 1 -0.3633 -1.0253 0.0696 32 1 -0.3633 0.5729 0.8532 33 1 -0.3634 0.4524 -0.9227 34 1 1.4538 -1.6783 1.3987 35 1 2.1523 -0.1801 2.0858 36 1 5.4093 -1.8895 -1.1223 37 1 8.9237 -2.6151 1.0631 38 1 6.3527 -0.0979 3.3382 39 1 6.6078 -0.0690 5.7859 40 1 7.4916 -2.0453 6.9568 41 1 8.1139 -4.0585 5.6851 42 1 7.8525 -4.1008 3.2382 43 1 4.2425 -0.5981 -1.0609 44 1 3.6659 -2.2881 -1.0410 45 1 0.6439 -2.3151 -0.8089 46 1 -1.1246 -4.6786 -2.3696 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054732232.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:07 Heat of formation + Delta-G solvation = 91.170354 kcal Electronic energy + Delta-G solvation = -29565.649799 eV Core-core repulsion = 25650.409559 eV Total energy + Delta-G solvation = -3915.240239 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.51931 -39.63834 -39.20501 -37.50597 -34.40820 -33.86163 -32.55128 -31.32782 -30.64687 -30.00737 -29.41745 -27.86038 -26.13457 -24.19839 -23.64421 -23.15676 -22.77413 -21.35444 -21.18872 -19.62746 -19.31695 -17.91580 -17.45607 -16.59416 -16.39177 -16.15880 -15.70598 -15.34701 -15.04523 -14.63042 -14.41799 -14.12452 -14.02507 -13.83623 -13.74990 -13.61725 -13.05046 -13.00644 -12.86026 -12.64059 -12.07080 -12.00913 -11.89222 -11.57770 -11.53704 -11.13715 -10.92866 -10.74341 -10.65486 -10.48584 -10.29298 -10.21299 -9.96965 -9.73002 -9.67611 -9.23123 -8.99930 -8.91440 -8.66567 -8.30984 -7.08081 -5.85050 -3.15781 0.71742 1.09085 1.44682 2.33450 2.82263 3.30188 3.40892 3.42186 3.45825 3.46437 3.46461 4.45880 4.52058 4.52658 4.57438 4.62686 4.80335 4.94114 5.04079 5.08249 5.13128 5.16231 5.31536 5.35941 5.46779 5.50899 5.59238 5.65655 5.72513 5.77849 5.88062 5.91284 6.03698 6.13912 6.16733 6.18803 6.22001 6.30540 6.34192 6.41521 6.48107 6.55196 6.58944 6.71552 6.91721 7.09906 7.63444 7.73675 7.78782 8.31303 8.33572 9.44860 9.98622 10.33467 11.36782 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.014731 B = 0.003060 C = 0.002789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1900.291141 B = 9146.958688 C =10036.318031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.114 4.114 3 H 0.080 0.920 4 C 0.121 3.879 5 N -0.592 5.592 6 C 0.599 3.401 7 O -0.550 6.550 8 C -0.072 4.072 9 C 0.034 3.966 10 N -0.491 5.491 11 C 0.209 3.791 12 N -0.387 5.387 13 C 0.116 3.884 14 C -0.071 4.071 15 C -0.107 4.107 16 C -0.110 4.110 17 C -0.112 4.112 18 C -0.110 4.110 19 C 0.059 3.941 20 C 0.172 3.828 21 H 0.075 0.925 22 N -0.710 5.710 23 C -0.249 4.249 24 H 0.072 0.928 25 C -0.006 4.006 26 N -0.929 5.929 27 Si 0.907 3.093 28 H -0.285 1.285 29 H -0.292 1.292 30 H -0.285 1.285 31 H 0.070 0.930 32 H 0.044 0.956 33 H 0.061 0.939 34 H 0.072 0.928 35 H 0.070 0.930 36 H 0.196 0.804 37 H 0.212 0.788 38 H 0.124 0.876 39 H 0.130 0.870 40 H 0.128 0.872 41 H 0.131 0.869 42 H 0.129 0.871 43 H 0.063 0.937 44 H 0.084 0.916 45 H 0.387 0.613 46 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.559 7.474 13.282 21.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.135 4.135 3 H 0.098 0.902 4 C -0.001 4.001 5 N -0.324 5.324 6 C 0.388 3.612 7 O -0.429 6.429 8 C -0.186 4.186 9 C -0.118 4.118 10 N -0.208 5.208 11 C -0.071 4.071 12 N -0.066 5.066 13 C 0.026 3.974 14 C -0.090 4.090 15 C -0.126 4.126 16 C -0.128 4.128 17 C -0.130 4.130 18 C -0.129 4.129 19 C -0.066 4.066 20 C 0.060 3.940 21 H 0.093 0.907 22 N -0.351 5.351 23 C -0.380 4.380 24 H 0.090 0.910 25 C -0.203 4.203 26 N -0.576 5.576 27 Si 0.738 3.262 28 H -0.211 1.211 29 H -0.218 1.218 30 H -0.211 1.211 31 H 0.089 0.911 32 H 0.063 0.937 33 H 0.080 0.920 34 H 0.090 0.910 35 H 0.088 0.912 36 H 0.213 0.787 37 H 0.228 0.772 38 H 0.142 0.858 39 H 0.148 0.852 40 H 0.146 0.854 41 H 0.149 0.851 42 H 0.147 0.853 43 H 0.081 0.919 44 H 0.102 0.898 45 H 0.222 0.778 46 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 15.931 7.244 13.165 21.900 hybrid contribution -0.573 -0.686 -0.085 0.898 sum 15.358 6.558 13.081 21.213 Atomic orbital electron populations 1.21539 0.93183 1.03091 1.00994 1.22690 0.97094 0.98432 0.95240 0.90211 1.22336 0.81972 0.98452 0.97385 1.48022 1.11423 1.65139 1.07791 1.16310 0.81850 0.77708 0.85353 1.90818 1.83858 1.54402 1.13869 1.20873 0.88710 1.16571 0.92413 1.23560 0.92952 1.00458 0.94848 1.70243 1.09289 1.19476 1.21822 1.25276 0.95917 1.02606 0.83336 1.42675 1.08443 1.50447 1.05041 1.17620 1.03932 0.95607 0.80261 1.20986 0.96859 0.96650 0.94490 1.21025 0.99085 0.99058 0.93426 1.21269 0.98112 0.93216 1.00224 1.20992 1.00373 0.98645 0.93010 1.21065 1.00330 0.96421 0.95072 1.23711 1.02040 1.02355 0.78540 1.21220 0.88166 0.89842 0.94803 0.90741 1.42431 1.47375 1.32538 1.12789 1.19180 1.14578 1.14119 0.90127 0.90957 1.24763 0.98037 0.99623 0.97901 1.69651 1.23105 1.31249 1.33564 0.86280 0.77184 0.78799 0.83973 1.21119 1.21752 1.21150 0.91100 0.93729 0.91995 0.90956 0.91171 0.78703 0.77167 0.85778 0.85216 0.85448 0.85126 0.85333 0.91863 0.89808 0.77775 0.93321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.00 8.85 37.16 0.33 -1.67 16 2 C -0.11 -1.72 3.52 -88.35 -0.31 -2.04 16 3 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 4 C 0.12 1.94 6.33 -2.41 -0.02 1.93 16 5 N -0.59 -9.98 3.32 -171.91 -0.57 -10.56 16 6 C 0.60 10.64 7.75 -12.84 -0.10 10.54 16 7 O -0.55 -10.71 14.59 5.20 0.08 -10.63 16 8 C -0.07 -1.16 6.76 -82.07 -0.55 -1.72 16 9 C 0.03 0.53 10.37 -17.46 -0.18 0.35 16 10 N -0.49 -7.40 11.20 -14.36 -0.16 -7.57 16 11 C 0.21 2.63 12.31 -90.34 -1.11 1.51 16 12 N -0.39 -5.46 2.85 -58.64 -0.17 -5.62 16 13 C 0.12 1.50 5.26 -83.62 -0.44 1.06 16 14 C -0.07 -0.88 7.91 -39.40 -0.31 -1.19 16 15 C -0.11 -1.08 10.04 -39.61 -0.40 -1.48 16 16 C -0.11 -0.96 10.04 -39.55 -0.40 -1.36 16 17 C -0.11 -0.99 10.04 -39.61 -0.40 -1.39 16 18 C -0.11 -1.18 9.78 -39.40 -0.39 -1.56 16 19 C 0.06 0.97 4.74 -3.06 -0.01 0.96 16 20 C 0.17 3.04 3.37 -66.10 -0.22 2.82 16 21 H 0.07 1.28 8.11 -51.93 -0.42 0.86 16 22 N -0.71 -16.10 4.55 -51.65 -0.24 -16.34 16 23 C -0.25 -6.39 9.97 -15.06 -0.15 -6.54 16 24 H 0.07 1.78 7.83 -52.49 -0.41 1.37 16 25 C -0.01 -0.17 5.50 -17.43 -0.10 -0.27 16 26 N -0.93 -26.85 13.06 55.49 0.72 -26.12 16 27 Si 0.91 21.60 29.55 -169.99 -5.02 16.58 16 28 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 29 H -0.29 -7.09 7.11 56.52 0.40 -6.68 16 30 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 31 H 0.07 1.28 6.42 -51.93 -0.33 0.94 16 32 H 0.04 0.58 8.14 -51.93 -0.42 0.15 16 33 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 34 H 0.07 1.29 7.99 -51.93 -0.41 0.87 16 35 H 0.07 1.07 8.08 -51.93 -0.42 0.65 16 36 H 0.20 2.91 4.46 -52.49 -0.23 2.67 16 37 H 0.21 1.71 8.06 -52.49 -0.42 1.28 16 38 H 0.12 1.64 7.98 -52.49 -0.42 1.22 16 39 H 0.13 1.02 8.06 -52.48 -0.42 0.60 16 40 H 0.13 0.76 8.06 -52.49 -0.42 0.34 16 41 H 0.13 0.82 8.06 -52.48 -0.42 0.39 16 42 H 0.13 1.21 8.06 -52.48 -0.42 0.79 16 43 H 0.06 0.89 6.78 -51.93 -0.35 0.54 16 44 H 0.08 1.55 7.02 -51.93 -0.36 1.19 16 45 H 0.39 9.48 6.20 -40.82 -0.25 9.22 16 46 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 LS Contribution 376.91 15.07 5.68 5.68 Total: -1.00 -32.13 376.91 -10.58 -42.70 By element: Atomic # 1 Polarization: 18.08 SS G_CDS: -6.14 Total: 11.94 kcal Atomic # 6 Polarization: 4.70 SS G_CDS: -4.76 Total: -0.06 kcal Atomic # 7 Polarization: -65.80 SS G_CDS: -0.41 Total: -66.21 kcal Atomic # 8 Polarization: -10.71 SS G_CDS: 0.08 Total: -10.63 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -32.13 -10.58 -42.70 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054732232.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.872 kcal (2) G-P(sol) polarization free energy of solvation -32.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.701 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds