Wall clock time and date at job start Sat Apr 11 2020 06:06:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08995 * 110.64342 * 2 1 4 4 C 1.54329 * 110.86984 * 236.75333 * 2 1 3 5 5 N 1.47019 * 107.27072 * 219.37695 * 4 2 1 6 6 C 1.34780 * 125.64773 * 178.91120 * 5 4 2 7 7 O 1.21682 * 119.99626 * 355.43201 * 6 5 4 8 8 C 1.46706 * 119.99900 * 175.44095 * 6 5 4 9 9 C 1.36703 * 126.85363 * 353.50193 * 8 6 5 10 10 N 1.33318 * 107.83374 * 179.83805 * 9 8 6 11 11 C 1.30874 * 109.74268 * 0.43999 * 10 9 8 12 12 N 1.34741 * 109.13361 * 359.72569 * 11 10 9 13 13 C 1.40114 * 126.50337 * 180.02562 * 12 11 10 14 14 C 1.38844 * 120.06674 * 124.34957 * 13 12 11 15 15 C 1.38116 * 119.92969 * 179.74748 * 14 13 12 16 16 C 1.38278 * 120.06628 * 0.53149 * 15 14 13 17 17 C 1.38277 * 120.13990 * 359.74946 * 16 15 14 18 18 C 1.38117 * 120.06683 * 359.97079 * 17 16 15 19 19 C 1.47526 * 108.71681 * 358.94092 * 5 4 2 20 20 C 1.54913 * 104.78079 * 24.12183 * 19 5 4 21 21 H 1.09005 * 111.00027 * 204.89990 * 20 19 5 22 22 N 1.46496 * 111.00284 * 81.09118 * 20 19 5 23 23 C 1.36931 * 120.00447 * 89.58208 * 22 20 19 24 24 H 1.08003 * 120.00117 * 359.97438 * 23 22 20 25 25 C 1.38808 * 120.00418 * 180.02562 * 23 22 20 26 26 N 1.31621 * 119.99766 * 359.97438 * 25 23 22 27 27 Si 1.86799 * 120.00268 * 179.97438 * 25 23 22 28 28 H 1.48503 * 109.47389 * 89.99629 * 27 25 23 29 29 H 1.48503 * 109.46983 * 209.99600 * 27 25 23 30 30 H 1.48497 * 109.47280 * 329.99657 * 27 25 23 31 31 H 1.09002 * 109.47025 * 296.86185 * 1 2 3 32 32 H 1.09001 * 109.47020 * 56.85423 * 1 2 3 33 33 H 1.08996 * 109.47371 * 176.85776 * 1 2 3 34 34 H 1.09004 * 109.87947 * 338.79428 * 4 2 1 35 35 H 1.08996 * 109.88227 * 99.80010 * 4 2 1 36 36 H 1.07997 * 126.08545 * 0.02562 * 9 8 6 37 37 H 1.08001 * 125.43422 * 179.74640 * 11 10 9 38 38 H 1.08003 * 120.03519 * 0.02938 * 14 13 12 39 39 H 1.08002 * 119.96631 * 180.29968 * 15 14 13 40 40 H 1.08009 * 119.92689 * 179.72059 * 16 15 14 41 41 H 1.07999 * 119.96741 * 180.02562 * 17 16 15 42 42 H 1.07995 * 120.03576 * 180.02562 * 18 17 16 43 43 H 1.09002 * 110.37128 * 265.30988 * 19 5 4 44 44 H 1.09001 * 110.41112 * 142.95355 * 19 5 4 45 45 H 0.97007 * 119.99888 * 269.29949 * 22 20 19 46 46 H 0.97006 * 119.99621 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9143 1.0200 0.0000 4 6 2.0798 -0.7906 -1.2060 5 7 3.2493 -1.5471 -0.7355 6 6 3.9995 -2.3796 -1.4843 7 8 3.6792 -2.6196 -2.6334 8 6 5.2021 -2.9966 -0.9138 9 6 5.7577 -2.7341 0.3073 10 7 6.8351 -3.5079 0.4405 11 6 6.9920 -4.2362 -0.6355 12 7 6.0034 -3.9556 -1.5068 13 6 5.8211 -4.5272 -2.7730 14 6 4.6191 -5.1452 -3.0908 15 6 4.4407 -5.7031 -4.3416 16 6 5.4616 -5.6563 -5.2731 17 6 6.6619 -5.0466 -4.9576 18 6 6.8444 -4.4818 -3.7105 19 6 3.4655 -1.2449 0.6922 20 6 2.0789 -0.7935 1.2150 21 1 2.1814 -0.1493 2.0884 22 7 1.2294 -1.9487 1.5151 23 6 1.2525 -2.5097 2.7639 24 1 1.8973 -2.1008 3.5278 25 6 0.4479 -3.6046 3.0480 26 7 -0.3376 -4.1033 2.1171 27 14 0.4800 -4.3704 4.7516 28 1 -0.5387 -3.7130 5.6091 29 1 0.1786 -5.8208 4.6480 30 1 1.8257 -4.1861 5.3519 31 1 -0.3633 0.4643 0.9168 32 1 -0.3633 0.5619 -0.8605 33 1 -0.3634 -1.0261 -0.0563 34 1 1.3189 -1.4772 -1.5771 35 1 2.3749 -0.1017 -1.9974 36 1 5.3878 -2.0279 1.0359 37 1 7.7870 -4.9488 -0.7988 38 1 3.8229 -5.1856 -2.3623 39 1 3.5042 -6.1798 -4.5911 40 1 5.3212 -6.0973 -6.2490 41 1 7.4572 -5.0113 -5.6874 42 1 7.7819 -4.0054 -3.4648 43 1 4.1931 -0.4410 0.8039 44 1 3.7993 -2.1364 1.2232 45 1 0.6474 -2.3137 0.8301 46 1 -0.9001 -4.8682 2.3157 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054732233.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:10 Heat of formation + Delta-G solvation = 91.946908 kcal Electronic energy + Delta-G solvation = -29927.648977 eV Core-core repulsion = 26012.442412 eV Total energy + Delta-G solvation = -3915.206565 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.42977 -39.58549 -39.10920 -37.44385 -34.31382 -33.79013 -32.55180 -31.22533 -30.62881 -29.93394 -29.33688 -27.88080 -26.10209 -24.15679 -23.60762 -23.07228 -22.71320 -21.28624 -21.09022 -19.55748 -19.28247 -17.89804 -17.38401 -16.50178 -16.30814 -16.11482 -15.76823 -15.18873 -14.98502 -14.65024 -14.39881 -14.05908 -13.87233 -13.76270 -13.67701 -13.54915 -12.97422 -12.90617 -12.82464 -12.59032 -12.20912 -11.97216 -11.85326 -11.50592 -11.40293 -11.13144 -10.93555 -10.72292 -10.56041 -10.46534 -10.28499 -10.13285 -9.96083 -9.68882 -9.62605 -9.12747 -9.04854 -8.81131 -8.56639 -8.25168 -7.05018 -5.84093 -3.14011 0.80976 1.19335 1.55398 2.42280 2.91176 3.36741 3.40206 3.46440 3.47511 3.52278 3.57438 4.51677 4.53894 4.59417 4.66444 4.72286 4.90551 4.99199 5.10303 5.12957 5.18211 5.25757 5.29387 5.44034 5.51974 5.57099 5.60575 5.71156 5.76962 5.87357 5.89227 5.94148 6.12511 6.13570 6.18011 6.27467 6.30317 6.33058 6.33258 6.46328 6.48850 6.60015 6.65941 6.73431 6.89726 7.19486 7.63872 7.79443 7.87011 8.33378 8.41002 9.45745 10.00208 10.34617 11.37830 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.011273 B = 0.003631 C = 0.003383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2483.241885 B = 7709.954121 C = 8275.633987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.114 4.114 3 H 0.081 0.919 4 C 0.122 3.878 5 N -0.588 5.588 6 C 0.602 3.398 7 O -0.550 6.550 8 C -0.068 4.068 9 C 0.034 3.966 10 N -0.491 5.491 11 C 0.209 3.791 12 N -0.386 5.386 13 C 0.116 3.884 14 C -0.068 4.068 15 C -0.106 4.106 16 C -0.111 4.111 17 C -0.114 4.114 18 C -0.111 4.111 19 C 0.053 3.947 20 C 0.172 3.828 21 H 0.075 0.925 22 N -0.708 5.708 23 C -0.247 4.247 24 H 0.073 0.927 25 C -0.007 4.007 26 N -0.929 5.929 27 Si 0.906 3.094 28 H -0.289 1.289 29 H -0.292 1.292 30 H -0.280 1.280 31 H 0.061 0.939 32 H 0.044 0.956 33 H 0.069 0.931 34 H 0.069 0.931 35 H 0.060 0.940 36 H 0.194 0.806 37 H 0.212 0.788 38 H 0.128 0.872 39 H 0.131 0.869 40 H 0.127 0.873 41 H 0.130 0.870 42 H 0.127 0.873 43 H 0.062 0.938 44 H 0.092 0.908 45 H 0.387 0.613 46 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.553 2.504 -12.290 17.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.134 4.134 3 H 0.099 0.901 4 C 0.000 4.000 5 N -0.319 5.319 6 C 0.391 3.609 7 O -0.429 6.429 8 C -0.182 4.182 9 C -0.118 4.118 10 N -0.209 5.209 11 C -0.072 4.072 12 N -0.065 5.065 13 C 0.025 3.975 14 C -0.087 4.087 15 C -0.124 4.124 16 C -0.129 4.129 17 C -0.133 4.133 18 C -0.131 4.131 19 C -0.072 4.072 20 C 0.059 3.941 21 H 0.093 0.907 22 N -0.348 5.348 23 C -0.378 4.378 24 H 0.091 0.909 25 C -0.204 4.204 26 N -0.576 5.576 27 Si 0.736 3.264 28 H -0.216 1.216 29 H -0.219 1.219 30 H -0.206 1.206 31 H 0.080 0.920 32 H 0.063 0.937 33 H 0.087 0.913 34 H 0.087 0.913 35 H 0.078 0.922 36 H 0.211 0.789 37 H 0.228 0.772 38 H 0.146 0.854 39 H 0.149 0.851 40 H 0.145 0.855 41 H 0.148 0.852 42 H 0.145 0.855 43 H 0.080 0.920 44 H 0.110 0.890 45 H 0.222 0.778 46 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 12.903 2.187 -12.185 17.882 hybrid contribution -0.658 -0.669 0.106 0.945 sum 12.245 1.518 -12.079 17.267 Atomic orbital electron populations 1.21594 0.93345 1.03013 1.00932 1.22530 0.97172 0.98570 0.95135 0.90087 1.21957 0.87274 0.94202 0.96600 1.47899 1.28903 1.43374 1.11737 1.16269 0.81330 0.78640 0.84705 1.90810 1.72118 1.62424 1.17588 1.20834 0.99321 1.00880 0.97155 1.23415 0.93024 1.00539 0.94799 1.70214 1.18905 1.09132 1.22617 1.25243 0.94192 1.01969 0.85778 1.42660 1.21492 1.29359 1.12972 1.17621 0.96487 0.99479 0.83884 1.21093 0.95560 0.94337 0.97735 1.21060 0.99354 0.99396 0.92628 1.21264 0.93291 0.98820 0.99505 1.20954 0.97967 0.98577 0.95777 1.21008 0.98472 1.00572 0.93023 1.23892 1.01774 1.01098 0.80481 1.21372 0.88365 0.89949 0.94385 0.90684 1.42371 1.47395 1.32510 1.12559 1.19229 1.20117 1.09530 0.88917 0.90900 1.24737 0.99182 0.98699 0.97733 1.69665 1.29085 1.26368 1.32470 0.86220 0.77683 0.78493 0.83964 1.21650 1.21852 1.20582 0.92032 0.93719 0.91251 0.91256 0.92156 0.78927 0.77204 0.85443 0.85116 0.85497 0.85239 0.85460 0.92008 0.89018 0.77760 0.93434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.01 8.73 37.16 0.32 -1.68 16 2 C -0.11 -1.70 3.41 -88.78 -0.30 -2.00 16 3 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 4 C 0.12 1.97 6.46 -3.06 -0.02 1.95 16 5 N -0.59 -10.24 3.33 -171.96 -0.57 -10.81 16 6 C 0.60 11.33 7.74 -12.84 -0.10 11.23 16 7 O -0.55 -11.32 14.58 5.20 0.08 -11.25 16 8 C -0.07 -1.18 6.73 -82.07 -0.55 -1.73 16 9 C 0.03 0.56 10.20 -17.46 -0.18 0.38 16 10 N -0.49 -7.86 11.20 -14.36 -0.16 -8.03 16 11 C 0.21 2.86 12.30 -90.34 -1.11 1.75 16 12 N -0.39 -5.94 2.85 -58.64 -0.17 -6.11 16 13 C 0.12 1.65 5.29 -83.62 -0.44 1.21 16 14 C -0.07 -1.01 7.86 -39.40 -0.31 -1.32 16 15 C -0.11 -1.27 10.04 -39.61 -0.40 -1.67 16 16 C -0.11 -1.09 10.04 -39.55 -0.40 -1.49 16 17 C -0.11 -1.09 10.04 -39.61 -0.40 -1.49 16 18 C -0.11 -1.26 9.77 -39.40 -0.38 -1.65 16 19 C 0.05 0.87 4.83 -2.47 -0.01 0.86 16 20 C 0.17 3.04 3.45 -65.78 -0.23 2.81 16 21 H 0.08 1.27 8.11 -51.93 -0.42 0.85 16 22 N -0.71 -16.25 4.67 -51.35 -0.24 -16.49 16 23 C -0.25 -6.40 9.97 -15.06 -0.15 -6.55 16 24 H 0.07 1.82 7.83 -52.48 -0.41 1.40 16 25 C -0.01 -0.19 5.50 -17.43 -0.10 -0.28 16 26 N -0.93 -27.19 13.06 55.49 0.72 -26.47 16 27 Si 0.91 21.84 29.55 -169.99 -5.02 16.82 16 28 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 29 H -0.29 -7.22 7.11 56.52 0.40 -6.81 16 30 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 31 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 32 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.07 1.27 6.42 -51.93 -0.33 0.93 16 34 H 0.07 1.24 7.78 -51.93 -0.40 0.84 16 35 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 36 H 0.19 2.90 4.77 -52.49 -0.25 2.65 16 37 H 0.21 1.94 8.06 -52.49 -0.42 1.52 16 38 H 0.13 2.17 7.94 -52.48 -0.42 1.75 16 39 H 0.13 1.34 8.06 -52.49 -0.42 0.92 16 40 H 0.13 0.90 8.06 -52.48 -0.42 0.47 16 41 H 0.13 0.86 8.06 -52.49 -0.42 0.44 16 42 H 0.13 1.20 8.06 -52.49 -0.42 0.78 16 43 H 0.06 0.83 7.82 -51.93 -0.41 0.42 16 44 H 0.09 1.67 5.81 -51.93 -0.30 1.37 16 45 H 0.39 9.72 6.22 -40.82 -0.25 9.46 16 46 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 LS Contribution 376.81 15.07 5.68 5.68 Total: -1.00 -32.77 376.81 -10.58 -43.35 By element: Atomic # 1 Polarization: 19.12 SS G_CDS: -6.14 Total: 12.99 kcal Atomic # 6 Polarization: 5.08 SS G_CDS: -4.75 Total: 0.33 kcal Atomic # 7 Polarization: -67.49 SS G_CDS: -0.42 Total: -67.91 kcal Atomic # 8 Polarization: -11.32 SS G_CDS: 0.08 Total: -11.25 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -32.77 -10.58 -43.35 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054732233.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.294 kcal (2) G-P(sol) polarization free energy of solvation -32.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.348 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds