Wall clock time and date at job start Sat Apr 11 2020 06:06:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08995 * 110.64342 * 2 1 4 4 C 1.54329 * 110.86984 * 236.75333 * 2 1 3 5 5 N 1.47019 * 107.27072 * 219.37695 * 4 2 1 6 6 C 1.34780 * 125.64773 * 178.91120 * 5 4 2 7 7 O 1.21682 * 119.99626 * 355.43201 * 6 5 4 8 8 C 1.46706 * 119.99900 * 175.44095 * 6 5 4 9 9 C 1.36703 * 126.85363 * 353.50193 * 8 6 5 10 10 N 1.33318 * 107.83374 * 179.83805 * 9 8 6 11 11 C 1.30874 * 109.74268 * 0.43999 * 10 9 8 12 12 N 1.34741 * 109.13361 * 359.72569 * 11 10 9 13 13 C 1.40114 * 126.50337 * 180.02562 * 12 11 10 14 14 C 1.38844 * 120.06674 * 124.34957 * 13 12 11 15 15 C 1.38116 * 119.92969 * 179.74748 * 14 13 12 16 16 C 1.38278 * 120.06628 * 0.53149 * 15 14 13 17 17 C 1.38277 * 120.13990 * 359.74946 * 16 15 14 18 18 C 1.38117 * 120.06683 * 359.97079 * 17 16 15 19 19 C 1.47526 * 108.71681 * 358.94092 * 5 4 2 20 20 C 1.54913 * 104.78079 * 24.12183 * 19 5 4 21 21 H 1.09005 * 111.00027 * 204.89990 * 20 19 5 22 22 N 1.46496 * 111.00284 * 81.09118 * 20 19 5 23 23 C 1.36931 * 120.00447 * 89.58208 * 22 20 19 24 24 H 1.08003 * 120.00117 * 359.97438 * 23 22 20 25 25 C 1.38808 * 120.00418 * 180.02562 * 23 22 20 26 26 N 1.31621 * 119.99766 * 359.97438 * 25 23 22 27 27 Si 1.86799 * 120.00268 * 179.97438 * 25 23 22 28 28 H 1.48503 * 109.47389 * 89.99629 * 27 25 23 29 29 H 1.48503 * 109.46983 * 209.99600 * 27 25 23 30 30 H 1.48497 * 109.47280 * 329.99657 * 27 25 23 31 31 H 1.09002 * 109.47025 * 296.86185 * 1 2 3 32 32 H 1.09001 * 109.47020 * 56.85423 * 1 2 3 33 33 H 1.08996 * 109.47371 * 176.85776 * 1 2 3 34 34 H 1.09004 * 109.87947 * 338.79428 * 4 2 1 35 35 H 1.08996 * 109.88227 * 99.80010 * 4 2 1 36 36 H 1.07997 * 126.08545 * 0.02562 * 9 8 6 37 37 H 1.08001 * 125.43422 * 179.74640 * 11 10 9 38 38 H 1.08003 * 120.03519 * 0.02938 * 14 13 12 39 39 H 1.08002 * 119.96631 * 180.29968 * 15 14 13 40 40 H 1.08009 * 119.92689 * 179.72059 * 16 15 14 41 41 H 1.07999 * 119.96741 * 180.02562 * 17 16 15 42 42 H 1.07995 * 120.03576 * 180.02562 * 18 17 16 43 43 H 1.09002 * 110.37128 * 265.30988 * 19 5 4 44 44 H 1.09001 * 110.41112 * 142.95355 * 19 5 4 45 45 H 0.97007 * 119.99888 * 269.29949 * 22 20 19 46 46 H 0.97006 * 119.99621 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9143 1.0200 0.0000 4 6 2.0798 -0.7906 -1.2060 5 7 3.2493 -1.5471 -0.7355 6 6 3.9995 -2.3796 -1.4843 7 8 3.6792 -2.6196 -2.6334 8 6 5.2021 -2.9966 -0.9138 9 6 5.7577 -2.7341 0.3073 10 7 6.8351 -3.5079 0.4405 11 6 6.9920 -4.2362 -0.6355 12 7 6.0034 -3.9556 -1.5068 13 6 5.8211 -4.5272 -2.7730 14 6 4.6191 -5.1452 -3.0908 15 6 4.4407 -5.7031 -4.3416 16 6 5.4616 -5.6563 -5.2731 17 6 6.6619 -5.0466 -4.9576 18 6 6.8444 -4.4818 -3.7105 19 6 3.4655 -1.2449 0.6922 20 6 2.0789 -0.7935 1.2150 21 1 2.1814 -0.1493 2.0884 22 7 1.2294 -1.9487 1.5151 23 6 1.2525 -2.5097 2.7639 24 1 1.8973 -2.1008 3.5278 25 6 0.4479 -3.6046 3.0480 26 7 -0.3376 -4.1033 2.1171 27 14 0.4800 -4.3704 4.7516 28 1 -0.5387 -3.7130 5.6091 29 1 0.1786 -5.8208 4.6480 30 1 1.8257 -4.1861 5.3519 31 1 -0.3633 0.4643 0.9168 32 1 -0.3633 0.5619 -0.8605 33 1 -0.3634 -1.0261 -0.0563 34 1 1.3189 -1.4772 -1.5771 35 1 2.3749 -0.1017 -1.9974 36 1 5.3878 -2.0279 1.0359 37 1 7.7870 -4.9488 -0.7988 38 1 3.8229 -5.1856 -2.3623 39 1 3.5042 -6.1798 -4.5911 40 1 5.3212 -6.0973 -6.2490 41 1 7.4572 -5.0113 -5.6874 42 1 7.7819 -4.0054 -3.4648 43 1 4.1931 -0.4410 0.8039 44 1 3.7993 -2.1364 1.2232 45 1 0.6474 -2.3137 0.8301 46 1 -0.9001 -4.8682 2.3157 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001054732233.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:09 Heat of formation + Delta-G solvation = 73.270430 kcal Electronic energy + Delta-G solvation = -29928.458850 eV Core-core repulsion = 26012.442412 eV Total energy + Delta-G solvation = -3916.016438 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -43.59015 -40.95624 -40.04289 -38.89123 -35.77150 -35.17415 -34.03630 -32.39307 -32.09949 -31.13075 -30.37616 -29.45051 -27.39381 -25.91528 -24.87693 -24.15222 -23.82720 -22.55268 -22.25585 -20.71297 -20.65636 -19.44387 -18.89348 -17.76072 -17.44772 -17.33171 -17.01385 -16.47599 -16.43867 -15.98450 -15.72893 -15.50087 -15.14489 -14.93105 -14.92262 -14.62946 -14.49421 -14.20037 -13.98955 -13.80232 -13.61344 -13.39961 -12.99757 -12.86504 -12.82802 -12.64202 -12.33241 -12.27391 -12.14393 -11.93670 -11.77491 -11.49250 -11.37212 -11.24715 -11.02355 -10.93189 -10.05038 -9.95525 -9.69730 -9.61188 -8.95473 -7.92839 -5.20160 -0.20618 0.29190 0.42111 1.29188 1.47621 1.48727 1.56233 1.72048 2.09022 2.21859 2.56768 2.64523 3.29090 3.39236 3.55855 3.72707 3.78457 3.84129 3.86991 3.92062 3.94136 4.10084 4.13210 4.19750 4.36056 4.37602 4.42466 4.60789 4.64112 4.64755 4.72336 4.76228 4.84753 4.92685 4.96006 4.99467 5.18550 5.20183 5.28211 5.32446 5.36385 5.39899 5.43538 5.54283 5.60302 5.77173 6.14969 6.28440 6.40564 6.67839 7.01637 7.36091 8.11816 8.33169 9.30609 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.011273 B = 0.003631 C = 0.003383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2483.241885 B = 7709.954121 C = 8275.633987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.097 4.097 3 H 0.123 0.877 4 C 0.121 3.879 5 N -0.591 5.591 6 C 0.593 3.407 7 O -0.578 6.578 8 C -0.100 4.100 9 C 0.036 3.964 10 N -0.515 5.515 11 C 0.225 3.775 12 N -0.389 5.389 13 C 0.090 3.910 14 C -0.098 4.098 15 C -0.118 4.118 16 C -0.102 4.102 17 C -0.104 4.104 18 C -0.110 4.110 19 C 0.063 3.937 20 C 0.160 3.840 21 H 0.093 0.907 22 N -0.721 5.721 23 C -0.231 4.231 24 H 0.085 0.915 25 C -0.074 4.074 26 N -0.971 5.971 27 Si 0.964 3.036 28 H -0.286 1.286 29 H -0.306 1.306 30 H -0.268 1.268 31 H 0.060 0.940 32 H 0.071 0.929 33 H 0.030 0.970 34 H 0.040 0.960 35 H 0.079 0.921 36 H 0.202 0.798 37 H 0.254 0.746 38 H 0.085 0.915 39 H 0.138 0.862 40 H 0.163 0.837 41 H 0.170 0.830 42 H 0.149 0.851 43 H 0.103 0.897 44 H 0.070 0.930 45 H 0.372 0.628 46 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.493 3.828 -13.302 20.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.117 4.117 3 H 0.141 0.859 4 C -0.001 4.001 5 N -0.322 5.322 6 C 0.383 3.617 7 O -0.460 6.460 8 C -0.215 4.215 9 C -0.116 4.116 10 N -0.233 5.233 11 C -0.056 4.056 12 N -0.067 5.067 13 C 0.000 4.000 14 C -0.118 4.118 15 C -0.136 4.136 16 C -0.120 4.120 17 C -0.122 4.122 18 C -0.129 4.129 19 C -0.062 4.062 20 C 0.049 3.951 21 H 0.111 0.889 22 N -0.360 5.360 23 C -0.363 4.363 24 H 0.103 0.897 25 C -0.266 4.266 26 N -0.622 5.622 27 Si 0.794 3.206 28 H -0.213 1.213 29 H -0.233 1.233 30 H -0.192 1.192 31 H 0.079 0.921 32 H 0.090 0.910 33 H 0.049 0.951 34 H 0.059 0.941 35 H 0.098 0.902 36 H 0.219 0.781 37 H 0.270 0.730 38 H 0.103 0.897 39 H 0.156 0.844 40 H 0.180 0.820 41 H 0.188 0.812 42 H 0.167 0.833 43 H 0.121 0.879 44 H 0.088 0.912 45 H 0.205 0.795 46 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 15.881 3.568 -13.181 20.945 hybrid contribution -1.495 -1.058 0.313 1.858 sum 14.386 2.510 -12.868 19.464 Atomic orbital electron populations 1.21521 0.93800 1.00942 1.02080 1.22523 0.96659 0.99864 0.92636 0.85871 1.22030 0.86378 0.93920 0.97810 1.48011 1.28905 1.43182 1.12076 1.16598 0.81919 0.78597 0.84597 1.90772 1.73060 1.63370 1.18839 1.20804 0.99857 1.02652 0.98142 1.23583 0.93009 1.00588 0.94466 1.70237 1.19182 1.10100 1.23776 1.26116 0.93972 1.01015 0.84497 1.42820 1.21310 1.28846 1.13678 1.17895 0.97303 1.00537 0.84278 1.20942 0.95314 0.97137 0.98401 1.21274 1.00767 0.99447 0.92141 1.21683 0.92472 0.97703 1.00149 1.21468 0.98661 0.96461 0.95574 1.21322 0.98302 1.00317 0.92957 1.23810 1.01529 1.01366 0.79525 1.21715 0.88281 0.88731 0.96341 0.88946 1.42547 1.48170 1.33942 1.11298 1.19675 1.18193 1.08398 0.90047 0.89679 1.25460 1.00159 1.00186 1.00822 1.69832 1.30890 1.27120 1.34331 0.85269 0.78072 0.76724 0.80515 1.21346 1.23335 1.19243 0.92144 0.91018 0.95112 0.94146 0.90229 0.78134 0.72989 0.89653 0.84403 0.81979 0.81213 0.83305 0.87926 0.91184 0.79473 0.94479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.77 8.73 71.98 0.63 -3.15 16 2 C -0.10 -2.72 3.41 -9.60 -0.03 -2.76 16 3 H 0.12 2.52 8.14 -2.39 -0.02 2.50 16 4 C 0.12 3.88 6.46 86.73 0.56 4.44 16 5 N -0.59 -20.77 3.33 -816.19 -2.72 -23.48 16 6 C 0.59 23.16 7.74 86.45 0.67 23.83 16 7 O -0.58 -25.06 14.58 -4.29 -0.06 -25.13 16 8 C -0.10 -3.57 6.73 39.97 0.27 -3.30 16 9 C 0.04 1.18 10.20 84.11 0.86 2.04 16 10 N -0.52 -16.08 11.20 -199.34 -2.23 -18.31 16 11 C 0.22 5.89 12.30 180.25 2.22 8.10 16 12 N -0.39 -12.02 2.85 -339.42 -0.97 -12.99 16 13 C 0.09 2.56 5.29 38.11 0.20 2.77 16 14 C -0.10 -3.10 7.86 22.39 0.18 -2.93 16 15 C -0.12 -2.85 10.04 22.25 0.22 -2.63 16 16 C -0.10 -1.75 10.04 22.29 0.22 -1.53 16 17 C -0.10 -1.61 10.04 22.25 0.22 -1.39 16 18 C -0.11 -2.24 9.77 22.39 0.22 -2.02 16 19 C 0.06 1.98 4.83 86.84 0.42 2.40 16 20 C 0.16 5.45 3.45 46.38 0.16 5.61 16 21 H 0.09 2.88 8.11 -2.38 -0.02 2.86 16 22 N -0.72 -33.70 4.67 -316.38 -1.48 -35.18 16 23 C -0.23 -12.09 9.97 84.03 0.84 -11.26 16 24 H 0.09 4.16 7.83 -2.91 -0.02 4.14 16 25 C -0.07 -4.18 5.50 84.86 0.47 -3.71 16 26 N -0.97 -59.50 13.06 21.65 0.28 -59.22 16 27 Si 0.96 45.92 29.55 68.60 2.03 47.95 16 28 H -0.29 -13.33 7.11 99.48 0.71 -12.63 16 29 H -0.31 -15.12 7.11 99.48 0.71 -14.42 16 30 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 31 H 0.06 1.81 8.14 -2.39 -0.02 1.80 16 32 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 33 H 0.03 1.16 6.42 -2.39 -0.02 1.14 16 34 H 0.04 1.52 7.78 -2.38 -0.02 1.50 16 35 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 36 H 0.20 5.94 4.77 -2.91 -0.01 5.93 16 37 H 0.25 3.95 8.06 -2.91 -0.02 3.93 16 38 H 0.09 3.30 7.94 -2.91 -0.02 3.28 16 39 H 0.14 2.94 8.06 -2.91 -0.02 2.92 16 40 H 0.16 1.62 8.06 -2.91 -0.02 1.60 16 41 H 0.17 1.31 8.06 -2.91 -0.02 1.28 16 42 H 0.15 2.32 8.06 -2.91 -0.02 2.29 16 43 H 0.10 2.45 7.82 -2.39 -0.02 2.44 16 44 H 0.07 2.56 5.81 -2.39 -0.01 2.55 16 45 H 0.37 19.61 6.22 -92.70 -0.58 19.03 16 46 H 0.25 14.89 8.31 -92.70 -0.77 14.12 16 Total: -1.00 -76.53 376.81 3.60 -72.93 By element: Atomic # 1 Polarization: 38.48 SS G_CDS: 0.43 Total: 38.92 kcal Atomic # 6 Polarization: 6.19 SS G_CDS: 8.32 Total: 14.52 kcal Atomic # 7 Polarization: -142.07 SS G_CDS: -7.11 Total: -149.18 kcal Atomic # 8 Polarization: -25.06 SS G_CDS: -0.06 Total: -25.13 kcal Atomic # 14 Polarization: 45.92 SS G_CDS: 2.03 Total: 47.95 kcal Total: -76.53 3.60 -72.93 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054732233.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.197 kcal (2) G-P(sol) polarization free energy of solvation -76.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.927 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds