Wall clock time and date at job start Sat Apr 11 2020 06:06:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09002 * 110.64399 * 2 1 4 4 C 1.54323 * 110.72004 * 236.85491 * 2 1 3 5 5 N 1.47023 * 107.27225 * 219.44578 * 4 2 1 6 6 C 1.34777 * 125.64791 * 178.90835 * 5 4 2 7 7 O 1.21576 * 119.99911 * 174.76270 * 6 5 4 8 8 C 1.47667 * 119.99942 * 354.76736 * 6 5 4 9 9 C 1.39701 * 120.07875 * 7.68336 * 8 6 5 10 10 C 1.37727 * 119.92072 * 179.70262 * 9 8 6 11 11 C 1.39059 * 120.07595 * 0.57102 * 10 9 8 12 12 N 1.39830 * 119.91897 * 179.69728 * 11 10 9 13 13 C 1.35840 * 126.10485 * 0.02885 * 12 11 10 14 14 C 1.35280 * 107.61332 * 179.97438 * 13 12 11 15 15 C 1.39950 * 107.97347 * 359.97438 * 14 13 12 16 16 N 1.30834 * 108.36355 * 359.75859 * 15 14 13 17 17 C 1.39057 * 120.15284 * 359.72665 * 11 10 9 18 18 C 1.37717 * 120.08138 * 359.97438 * 17 11 10 19 19 C 1.47427 * 108.70193 * 358.94095 * 5 4 2 20 20 C 1.55116 * 104.94487 * 24.00334 * 19 5 4 21 21 H 1.09008 * 110.93489 * 81.21019 * 20 19 5 22 22 N 1.46501 * 111.16608 * 205.12953 * 20 19 5 23 23 C 1.36930 * 119.99823 * 267.17111 * 22 20 19 24 24 H 1.08003 * 120.00365 * 0.02562 * 23 22 20 25 25 C 1.38808 * 120.00024 * 179.97438 * 23 22 20 26 26 N 1.31623 * 119.99835 * 0.02562 * 25 23 22 27 27 Si 1.86800 * 120.00521 * 179.97438 * 25 23 22 28 28 H 1.48504 * 109.46744 * 0.02562 * 27 25 23 29 29 H 1.48503 * 109.47209 * 119.99516 * 27 25 23 30 30 H 1.48499 * 109.47377 * 240.00145 * 27 25 23 31 31 H 1.08997 * 109.47329 * 179.30046 * 1 2 3 32 32 H 1.09000 * 109.47136 * 299.29994 * 1 2 3 33 33 H 1.08999 * 109.47396 * 59.30076 * 1 2 3 34 34 H 1.08996 * 109.88659 * 338.86343 * 4 2 1 35 35 H 1.08998 * 109.88051 * 99.87568 * 4 2 1 36 36 H 1.08003 * 120.04015 * 0.02562 * 9 8 6 37 37 H 1.07994 * 119.96059 * 180.29952 * 10 9 8 38 38 H 1.08000 * 126.19012 * 359.96146 * 13 12 11 39 39 H 1.08005 * 126.01437 * 179.97438 * 14 13 12 40 40 H 1.08000 * 125.82159 * 180.02562 * 15 14 13 41 41 H 1.08005 * 119.95504 * 179.97438 * 17 11 10 42 42 H 1.08002 * 120.03693 * 180.02562 * 18 17 11 43 43 H 1.08997 * 110.36403 * 142.97345 * 19 5 4 44 44 H 1.09001 * 110.36735 * 265.29042 * 19 5 4 45 45 H 0.97001 * 119.99764 * 87.16769 * 22 20 19 46 46 H 0.97008 * 119.99976 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9142 1.0200 0.0000 4 6 2.0760 -0.7892 -1.2086 5 7 3.2444 -1.5496 -0.7416 6 6 3.9914 -2.3822 -1.4934 7 8 4.9943 -2.8872 -1.0273 8 6 3.5917 -2.6810 -2.8832 9 6 2.5358 -1.9824 -3.4736 10 6 2.1697 -2.2595 -4.7721 11 6 2.8422 -3.2414 -5.4913 12 7 2.4636 -3.5244 -6.8074 13 6 1.4640 -2.9196 -7.5004 14 6 1.4232 -3.4786 -8.7316 15 6 2.4255 -4.4531 -8.7969 16 7 3.0521 -4.4776 -7.6486 17 6 3.8897 -3.9430 -4.9046 18 6 4.2650 -3.6669 -3.6087 19 6 3.4632 -1.2510 0.6855 20 6 2.0789 -0.7934 1.2152 21 1 1.4451 -1.6512 1.4403 22 7 2.2214 0.0737 2.3875 23 6 2.1866 -0.4651 3.6458 24 1 2.0546 -1.5294 3.7742 25 6 2.3221 0.3563 4.7565 26 7 2.4835 1.6532 4.6001 27 14 2.2740 -0.3785 6.4732 28 1 2.0833 -1.8481 6.3774 29 1 3.5529 -0.0904 7.1710 30 1 1.1484 0.2185 7.2359 31 1 -0.3634 -1.0275 -0.0125 32 1 -0.3633 0.5029 0.8962 33 1 -0.3634 0.5246 -0.8836 34 1 1.3130 -1.4732 -1.5800 35 1 2.3715 -0.0992 -1.9989 36 1 2.0105 -1.2224 -2.9142 37 1 1.3567 -1.7165 -5.2308 38 1 0.8186 -2.1348 -7.1345 39 1 0.7376 -3.2186 -9.5247 40 1 2.6472 -5.0755 -9.6512 41 1 4.4095 -4.7053 -5.4660 42 1 5.0790 -4.2120 -3.1539 43 1 3.7960 -2.1447 1.2133 44 1 4.1931 -0.4492 0.7978 45 1 2.3404 1.0294 2.2722 46 1 2.5786 2.2272 5.3763 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001054733222.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:22 Heat of formation + Delta-G solvation = 96.067047 kcal Electronic energy + Delta-G solvation = -28354.467009 eV Core-core repulsion = 24439.439107 eV Total energy + Delta-G solvation = -3915.027903 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.49313 -41.61657 -39.73096 -38.81708 -36.08670 -34.68238 -33.85288 -32.70235 -32.28522 -31.10858 -30.64537 -28.95146 -27.62171 -26.11754 -24.98547 -24.17864 -23.17149 -21.78460 -21.71676 -21.25187 -20.95123 -19.34447 -19.06599 -18.40715 -17.58427 -17.00746 -16.44933 -16.25579 -16.17652 -15.95117 -15.62976 -15.39579 -15.11700 -14.94766 -14.68756 -14.55015 -14.43919 -14.19108 -14.08261 -13.69910 -13.64316 -13.60878 -13.08322 -12.94684 -12.89801 -12.83353 -12.42886 -12.19460 -12.05227 -11.94348 -11.74116 -11.61890 -11.40612 -11.28844 -11.09370 -10.92935 -10.21902 -10.16668 -9.76318 -9.13222 -9.05549 -7.97825 -5.26906 -0.59578 0.20114 0.92322 1.34998 1.46246 1.48164 1.56904 1.78636 1.85424 1.87673 2.54466 2.71889 3.29805 3.35933 3.44731 3.50482 3.70827 3.82251 3.88994 3.96116 4.05237 4.13956 4.17475 4.24187 4.31790 4.41333 4.43360 4.52315 4.62174 4.64170 4.75184 4.84368 4.90268 4.91599 4.96275 5.04954 5.08645 5.11974 5.15124 5.19289 5.30590 5.38550 5.48336 5.51925 5.56726 5.69982 6.13459 6.24164 6.45896 6.60907 7.00885 7.31834 8.03354 8.27358 9.24789 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.026644 B = 0.002086 C = 0.001978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1050.652570 B =13419.270983 C =14151.623414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.106 4.106 3 H 0.082 0.918 4 C 0.094 3.906 5 N -0.604 5.604 6 C 0.563 3.437 7 O -0.592 6.592 8 C -0.154 4.154 9 C -0.082 4.082 10 C -0.137 4.137 11 C 0.179 3.821 12 N -0.344 5.344 13 C 0.049 3.951 14 C -0.260 4.260 15 C 0.055 3.945 16 N -0.338 5.338 17 C -0.140 4.140 18 C -0.044 4.044 19 C 0.090 3.910 20 C 0.172 3.828 21 H 0.066 0.934 22 N -0.718 5.718 23 C -0.244 4.244 24 H 0.074 0.926 25 C -0.068 4.068 26 N -0.963 5.963 27 Si 0.967 3.033 28 H -0.269 1.269 29 H -0.297 1.297 30 H -0.290 1.290 31 H 0.063 0.937 32 H 0.041 0.959 33 H 0.088 0.912 34 H 0.110 0.890 35 H 0.109 0.891 36 H 0.195 0.805 37 H 0.178 0.822 38 H 0.217 0.783 39 H 0.184 0.816 40 H 0.216 0.784 41 H 0.137 0.863 42 H 0.131 0.869 43 H 0.045 0.955 44 H 0.048 0.952 45 H 0.378 0.622 46 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.152 -6.470 -30.054 31.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.126 4.126 3 H 0.101 0.899 4 C -0.027 4.027 5 N -0.336 5.336 6 C 0.354 3.646 7 O -0.474 6.474 8 C -0.158 4.158 9 C -0.099 4.099 10 C -0.157 4.157 11 C 0.085 3.915 12 N -0.120 5.120 13 C -0.091 4.091 14 C -0.288 4.288 15 C -0.133 4.133 16 N -0.156 5.156 17 C -0.160 4.160 18 C -0.064 4.064 19 C -0.037 4.037 20 C 0.061 3.939 21 H 0.084 0.916 22 N -0.356 5.356 23 C -0.375 4.375 24 H 0.092 0.908 25 C -0.261 4.261 26 N -0.613 5.613 27 Si 0.797 3.203 28 H -0.194 1.194 29 H -0.224 1.224 30 H -0.217 1.217 31 H 0.082 0.918 32 H 0.060 0.940 33 H 0.107 0.893 34 H 0.128 0.872 35 H 0.127 0.873 36 H 0.211 0.789 37 H 0.195 0.805 38 H 0.233 0.767 39 H 0.201 0.799 40 H 0.232 0.768 41 H 0.155 0.845 42 H 0.149 0.851 43 H 0.063 0.937 44 H 0.066 0.934 45 H 0.211 0.789 46 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -6.696 -7.419 -28.966 30.642 hybrid contribution 0.324 0.193 1.045 1.111 sum -6.373 -7.226 -27.921 29.536 Atomic orbital electron populations 1.21653 0.91880 1.02610 1.02590 1.22508 0.98005 0.99309 0.92781 0.89925 1.22948 0.87289 0.95225 0.97279 1.48354 1.30486 1.43633 1.11116 1.18424 0.82140 0.77957 0.86059 1.90749 1.27567 1.54433 1.74641 1.19805 1.01073 1.01873 0.93070 1.22847 0.93830 0.98539 0.94728 1.21145 1.02302 0.98000 0.94235 1.18035 0.95778 0.96409 0.81285 1.46153 1.26681 1.29568 1.09630 1.23575 0.92642 0.99920 0.92952 1.22093 1.05348 1.02241 0.99119 1.24756 0.94013 0.98478 0.96005 1.77441 1.23025 1.11544 1.03620 1.20761 0.98229 1.02031 0.94998 1.21090 0.97673 0.94815 0.92812 1.23103 1.01380 0.99135 0.80054 1.21579 0.91750 0.93675 0.86923 0.91649 1.42369 1.86228 1.06270 1.00740 1.19613 1.40601 0.92800 0.84528 0.90847 1.25478 1.03300 0.95925 1.01377 1.69797 1.58072 1.03728 1.29711 0.85170 0.76625 0.77981 0.80551 1.19351 1.22433 1.21711 0.91804 0.93991 0.89308 0.87193 0.87307 0.78923 0.80453 0.76681 0.79874 0.76765 0.84509 0.85134 0.93682 0.93360 0.78897 0.93937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.71 9.14 71.98 0.66 -2.05 16 2 C -0.11 -2.69 3.19 -9.60 -0.03 -2.72 16 3 H 0.08 2.21 8.00 -2.39 -0.02 2.19 16 4 C 0.09 1.84 4.47 86.73 0.39 2.22 16 5 N -0.60 -18.09 3.33 -828.47 -2.76 -20.85 16 6 C 0.56 18.35 7.80 86.73 0.68 19.03 16 7 O -0.59 -24.75 16.67 -3.96 -0.07 -24.81 16 8 C -0.15 -3.77 5.87 -20.08 -0.12 -3.89 16 9 C -0.08 -1.29 8.58 22.50 0.19 -1.09 16 10 C -0.14 -1.73 9.44 22.35 0.21 -1.52 16 11 C 0.18 3.27 6.69 38.26 0.26 3.52 16 12 N -0.34 -6.01 3.81 -187.28 -0.71 -6.72 16 13 C 0.05 0.50 10.81 83.39 0.90 1.41 16 14 C -0.26 -2.41 10.80 22.00 0.24 -2.17 16 15 C 0.05 0.70 12.02 85.26 1.02 1.73 16 16 N -0.34 -6.74 11.85 -56.97 -0.67 -7.41 16 17 C -0.14 -3.05 9.64 22.34 0.22 -2.83 16 18 C -0.04 -1.08 9.58 22.50 0.22 -0.87 16 19 C 0.09 3.38 6.59 86.93 0.57 3.95 16 20 C 0.17 6.25 3.17 46.46 0.15 6.40 16 21 H 0.07 2.44 8.00 -2.38 -0.02 2.42 16 22 N -0.72 -33.96 5.25 -316.02 -1.66 -35.62 16 23 C -0.24 -13.08 9.96 84.03 0.84 -12.25 16 24 H 0.07 3.86 7.83 -2.91 -0.02 3.84 16 25 C -0.07 -3.80 5.50 84.86 0.47 -3.34 16 26 N -0.96 -57.14 13.06 21.65 0.28 -56.86 16 27 Si 0.97 45.65 29.55 68.60 2.03 47.67 16 28 H -0.27 -12.07 7.11 99.48 0.71 -11.37 16 29 H -0.30 -14.21 7.11 99.48 0.71 -13.50 16 30 H -0.29 -13.55 7.11 99.48 0.71 -12.85 16 31 H 0.06 1.21 8.12 -2.39 -0.02 1.19 16 32 H 0.04 1.13 8.14 -2.39 -0.02 1.11 16 33 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 34 H 0.11 1.53 6.31 -2.39 -0.02 1.51 16 35 H 0.11 1.48 6.81 -2.39 -0.02 1.47 16 36 H 0.19 2.09 2.75 -8.10 -0.02 2.06 16 37 H 0.18 0.71 6.72 -2.91 -0.02 0.69 16 38 H 0.22 0.35 7.04 -2.91 -0.02 0.33 16 39 H 0.18 0.53 8.06 -2.91 -0.02 0.51 16 40 H 0.22 1.24 8.06 -2.91 -0.02 1.21 16 41 H 0.14 3.02 7.68 -2.91 -0.02 3.00 16 42 H 0.13 3.43 7.67 -2.91 -0.02 3.41 16 43 H 0.04 1.91 8.09 -2.39 -0.02 1.89 16 44 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 45 H 0.38 19.08 7.76 -92.71 -0.72 18.36 16 46 H 0.25 14.53 8.31 -92.70 -0.77 13.76 16 Total: -1.00 -78.24 379.72 3.58 -74.66 By element: Atomic # 1 Polarization: 24.11 SS G_CDS: 0.29 Total: 24.40 kcal Atomic # 6 Polarization: -1.32 SS G_CDS: 6.85 Total: 5.53 kcal Atomic # 7 Polarization: -121.94 SS G_CDS: -5.52 Total: -127.46 kcal Atomic # 8 Polarization: -24.75 SS G_CDS: -0.07 Total: -24.81 kcal Atomic # 14 Polarization: 45.65 SS G_CDS: 2.03 Total: 47.67 kcal Total: -78.24 3.58 -74.66 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054733222.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 170.729 kcal (2) G-P(sol) polarization free energy of solvation -78.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.662 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds