Wall clock time and date at job start Sat Apr 11 2020 06:06:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 110.91600 * 2 1 4 4 C 1.54903 * 111.00252 * 123.90540 * 2 1 3 5 5 N 1.47750 * 104.84321 * 155.16655 * 4 2 1 6 6 C 1.34772 * 125.82499 * 155.82320 * 5 4 2 7 7 O 1.21572 * 120.00042 * 354.23182 * 6 5 4 8 8 C 1.47669 * 119.99765 * 174.22883 * 6 5 4 9 9 C 1.39710 * 120.07954 * 6.97670 * 8 6 5 10 10 C 1.37717 * 119.92119 * 179.76596 * 9 8 6 11 11 C 1.39057 * 120.07957 * 0.48787 * 10 9 8 12 12 N 1.39836 * 119.92344 * 179.76499 * 11 10 9 13 13 C 1.35838 * 126.10156 * 0.02562 * 12 11 10 14 14 C 1.35284 * 107.61445 * 179.97438 * 13 12 11 15 15 C 1.39959 * 107.96769 * 0.02562 * 14 13 12 16 16 N 1.30822 * 108.36561 * 359.75005 * 15 14 13 17 17 C 1.39060 * 120.15410 * 359.78372 * 11 10 9 18 18 C 1.37719 * 120.07904 * 359.95985 * 17 11 10 19 19 C 1.47028 * 108.52401 * 335.75031 * 5 4 2 20 20 C 1.54320 * 107.40585 * 1.17867 * 19 5 4 21 21 H 1.08997 * 110.72503 * 140.47829 * 20 19 5 22 22 N 1.46506 * 110.72083 * 263.75752 * 20 19 5 23 23 C 1.36937 * 119.99473 * 273.54580 * 22 20 19 24 24 H 1.07998 * 120.00263 * 359.97438 * 23 22 20 25 25 C 1.38812 * 119.99499 * 179.97438 * 23 22 20 26 26 N 1.31618 * 120.00306 * 0.02562 * 25 23 22 27 27 Si 1.86797 * 119.99930 * 179.97438 * 25 23 22 28 28 H 1.48505 * 109.46669 * 89.99991 * 27 25 23 29 29 H 1.48494 * 109.47500 * 209.99887 * 27 25 23 30 30 H 1.48494 * 109.47263 * 330.00578 * 27 25 23 31 31 H 1.09003 * 109.47331 * 183.90222 * 1 2 3 32 32 H 1.09005 * 109.47189 * 303.89924 * 1 2 3 33 33 H 1.08997 * 109.47729 * 63.90043 * 1 2 3 34 34 H 1.09006 * 110.36545 * 273.91757 * 4 2 1 35 35 H 1.08993 * 110.37080 * 36.13378 * 4 2 1 36 36 H 1.08004 * 120.03795 * 359.97438 * 9 8 6 37 37 H 1.08001 * 119.96370 * 180.23269 * 10 9 8 38 38 H 1.07995 * 126.19421 * 359.97438 * 13 12 11 39 39 H 1.08001 * 126.02055 * 179.97438 * 14 13 12 40 40 H 1.08004 * 125.81529 * 179.97438 * 15 14 13 41 41 H 1.08003 * 119.96114 * 179.97438 * 17 11 10 42 42 H 1.07997 * 120.03931 * 179.97438 * 18 17 11 43 43 H 1.09001 * 109.87734 * 241.68125 * 19 5 4 44 44 H 1.08997 * 109.88392 * 120.67703 * 19 5 4 45 45 H 0.96996 * 119.99894 * 93.54027 * 22 20 19 46 46 H 0.97003 * 120.00214 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9191 1.0182 0.0000 4 6 2.0852 -0.8067 1.2002 5 7 3.4308 -1.2425 0.7733 6 6 4.4538 -1.5596 1.5915 7 8 4.3447 -1.3988 2.7916 8 6 5.7071 -2.1026 1.0302 9 6 5.8907 -2.1524 -0.3539 10 6 7.0628 -2.6549 -0.8737 11 6 8.0588 -3.1218 -0.0231 12 7 9.2456 -3.6359 -0.5546 13 6 9.5542 -3.7368 -1.8736 14 6 10.7883 -4.2836 -1.9646 15 6 11.2501 -4.5258 -0.6658 16 7 10.3306 -4.1342 0.1784 17 6 7.8772 -3.0790 1.3550 18 6 6.7097 -2.5729 1.8819 19 6 3.4673 -1.2742 -0.6961 20 6 2.0860 -0.8079 -1.2023 21 1 2.1920 -0.1699 -2.0797 22 7 1.2266 -1.9575 -1.4963 23 6 1.2814 -2.5563 -2.7265 24 1 1.9577 -2.1810 -3.4802 25 6 0.4675 -3.6458 -3.0048 26 7 -0.3572 -4.1029 -2.0865 27 14 0.5415 -4.4624 -4.6832 28 1 1.5596 -5.5433 -4.6632 29 1 -0.7866 -5.0393 -5.0121 30 1 0.9108 -3.4537 -5.7086 31 1 -0.3634 -1.0253 0.0699 32 1 -0.3634 0.5732 0.8530 33 1 -0.3634 0.4521 -0.9228 34 1 2.1559 -0.1720 2.0836 35 1 1.4507 -1.6693 1.4036 36 1 5.1157 -1.7941 -1.0153 37 1 7.2069 -2.6903 -1.9435 38 1 8.9279 -3.4352 -2.7000 39 1 11.3228 -4.4967 -2.8786 40 1 12.2047 -4.9585 -0.4048 41 1 8.6526 -3.4428 2.0128 42 1 6.5692 -2.5403 2.9522 43 1 3.6649 -2.2894 -1.0402 44 1 4.2427 -0.6014 -1.0623 45 1 0.6190 -2.2943 -0.8194 46 1 -0.9262 -4.8640 -2.2811 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054733223.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:25 Heat of formation + Delta-G solvation = 120.329300 kcal Electronic energy + Delta-G solvation = -28940.592332 eV Core-core repulsion = 25026.616519 eV Total energy + Delta-G solvation = -3913.975812 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.73298 -40.39178 -38.67901 -37.50461 -34.18905 -33.72130 -32.60115 -31.41921 -30.59469 -30.32648 -29.39446 -27.98151 -26.28087 -24.51854 -23.79963 -23.19868 -22.32270 -20.92994 -20.77408 -19.79085 -19.36142 -18.35970 -17.70535 -16.96306 -16.11443 -15.59216 -15.44061 -15.35972 -14.97010 -14.78467 -14.46127 -14.15805 -14.02385 -13.81062 -13.73548 -13.24535 -13.08239 -12.98867 -12.85875 -12.75745 -12.53435 -12.02975 -11.90922 -11.69732 -11.34354 -11.18513 -11.00837 -10.95716 -10.70955 -10.52042 -10.41627 -10.28133 -9.98078 -9.82386 -9.70841 -9.41931 -9.23957 -9.05859 -8.42081 -8.20311 -7.14396 -5.91184 -3.21849 0.36879 1.16985 1.76160 2.10500 2.48995 2.95677 3.19407 3.34074 3.39376 3.41938 3.79727 4.18105 4.45127 4.45881 4.55747 4.67515 4.70517 4.95227 5.02951 5.05524 5.15668 5.24702 5.27038 5.37456 5.40410 5.46028 5.55212 5.62325 5.66908 5.78887 5.81483 5.87283 5.98350 6.00258 6.08784 6.13787 6.17986 6.26802 6.27649 6.34173 6.41360 6.45520 6.56695 6.64146 6.86251 6.90962 7.32925 7.55812 7.76263 8.26210 8.33404 9.38546 9.92600 10.27182 11.30672 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.009710 B = 0.003288 C = 0.002592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2882.897867 B = 8514.465559 C =10800.430143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.114 4.114 3 H 0.080 0.920 4 C 0.115 3.885 5 N -0.600 5.600 6 C 0.571 3.429 7 O -0.551 6.551 8 C -0.135 4.135 9 C -0.091 4.091 10 C -0.149 4.149 11 C 0.177 3.823 12 N -0.324 5.324 13 C 0.055 3.945 14 C -0.262 4.262 15 C 0.054 3.946 16 N -0.289 5.289 17 C -0.133 4.133 18 C -0.038 4.038 19 C 0.056 3.944 20 C 0.171 3.829 21 H 0.073 0.927 22 N -0.711 5.711 23 C -0.250 4.250 24 H 0.073 0.927 25 C -0.006 4.006 26 N -0.927 5.927 27 Si 0.906 3.094 28 H -0.289 1.289 29 H -0.291 1.291 30 H -0.281 1.281 31 H 0.069 0.931 32 H 0.045 0.955 33 H 0.061 0.939 34 H 0.072 0.928 35 H 0.072 0.928 36 H 0.179 0.821 37 H 0.135 0.865 38 H 0.181 0.819 39 H 0.155 0.845 40 H 0.189 0.811 41 H 0.141 0.859 42 H 0.143 0.857 43 H 0.089 0.911 44 H 0.065 0.935 45 H 0.388 0.612 46 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.870 5.103 1.315 17.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.134 4.134 3 H 0.098 0.902 4 C -0.007 4.007 5 N -0.331 5.331 6 C 0.361 3.639 7 O -0.431 6.431 8 C -0.139 4.139 9 C -0.110 4.110 10 C -0.169 4.169 11 C 0.084 3.916 12 N -0.100 5.100 13 C -0.086 4.086 14 C -0.290 4.290 15 C -0.134 4.134 16 N -0.108 5.108 17 C -0.153 4.153 18 C -0.057 4.057 19 C -0.069 4.069 20 C 0.058 3.942 21 H 0.090 0.910 22 N -0.352 5.352 23 C -0.381 4.381 24 H 0.091 0.909 25 C -0.203 4.203 26 N -0.574 5.574 27 Si 0.737 3.263 28 H -0.217 1.217 29 H -0.217 1.217 30 H -0.206 1.206 31 H 0.088 0.912 32 H 0.064 0.936 33 H 0.080 0.920 34 H 0.090 0.910 35 H 0.091 0.909 36 H 0.195 0.805 37 H 0.153 0.847 38 H 0.198 0.802 39 H 0.172 0.828 40 H 0.206 0.794 41 H 0.159 0.841 42 H 0.161 0.839 43 H 0.107 0.893 44 H 0.083 0.917 45 H 0.224 0.776 46 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 16.471 5.226 3.047 17.547 hybrid contribution 0.276 -0.967 -1.729 2.000 sum 16.747 4.259 1.319 17.330 Atomic orbital electron populations 1.21547 0.93249 1.03027 1.01074 1.22617 0.97055 0.98502 0.95201 0.90187 1.22367 0.82304 0.98547 0.97508 1.48339 1.11989 1.65266 1.07535 1.17790 0.82554 0.78001 0.85562 1.90743 1.82381 1.55361 1.14597 1.19987 0.95596 1.04363 0.93925 1.22886 0.97446 0.95020 0.95600 1.20812 0.93346 1.03112 0.99672 1.17809 0.83437 0.96847 0.93481 1.46040 1.12609 1.46905 1.04474 1.22862 0.97933 1.00769 0.87058 1.21632 0.97011 1.11502 0.98879 1.24098 0.99014 0.98799 0.91455 1.77426 0.95163 1.18042 1.20128 1.20785 0.98997 1.02816 0.92693 1.21144 0.90697 0.93136 1.00728 1.23766 1.01720 1.02137 0.79312 1.21268 0.88165 0.89952 0.94809 0.90957 1.42462 1.45309 1.32694 1.14747 1.19201 1.18838 1.09527 0.90557 0.90949 1.24755 0.98829 0.98832 0.97895 1.69650 1.27110 1.27398 1.33240 0.86218 0.76981 0.79446 0.83656 1.21679 1.21734 1.20640 0.91167 0.93588 0.92026 0.90975 0.90943 0.80477 0.84690 0.80233 0.82760 0.79376 0.84089 0.83882 0.89290 0.91687 0.77650 0.93295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.94 8.85 37.16 0.33 -1.61 16 2 C -0.11 -1.66 3.51 -88.47 -0.31 -1.97 16 3 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 4 C 0.11 1.82 6.40 -2.35 -0.02 1.81 16 5 N -0.60 -9.81 3.34 -176.27 -0.59 -10.40 16 6 C 0.57 9.85 7.81 -12.41 -0.10 9.75 16 7 O -0.55 -10.88 16.61 5.30 0.09 -10.79 16 8 C -0.14 -2.01 5.88 -104.95 -0.62 -2.63 16 9 C -0.09 -1.20 8.60 -39.22 -0.34 -1.54 16 10 C -0.15 -1.75 9.44 -39.47 -0.37 -2.12 16 11 C 0.18 2.26 6.69 -83.60 -0.56 1.70 16 12 N -0.32 -3.98 3.81 -10.55 -0.04 -4.02 16 13 C 0.06 0.54 10.81 -16.83 -0.18 0.35 16 14 C -0.26 -2.24 10.80 -39.99 -0.43 -2.67 16 15 C 0.05 0.50 12.02 -17.34 -0.21 0.30 16 16 N -0.29 -3.61 11.85 30.64 0.36 -3.24 16 17 C -0.13 -1.72 9.64 -39.47 -0.38 -2.10 16 18 C -0.04 -0.52 9.58 -39.22 -0.38 -0.89 16 19 C 0.06 0.86 4.60 -3.06 -0.01 0.85 16 20 C 0.17 2.87 3.37 -66.09 -0.22 2.65 16 21 H 0.07 1.17 8.12 -51.93 -0.42 0.75 16 22 N -0.71 -15.53 4.61 -51.65 -0.24 -15.76 16 23 C -0.25 -6.19 9.98 -15.06 -0.15 -6.34 16 24 H 0.07 1.70 7.83 -52.49 -0.41 1.29 16 25 C -0.01 -0.16 5.50 -17.43 -0.10 -0.26 16 26 N -0.93 -26.23 13.06 55.49 0.72 -25.50 16 27 Si 0.91 20.91 29.55 -169.99 -5.02 15.89 16 28 H -0.29 -6.73 7.11 56.52 0.40 -6.32 16 29 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 30 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 31 H 0.07 1.22 6.38 -51.93 -0.33 0.89 16 32 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 33 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 34 H 0.07 1.10 8.00 -51.93 -0.42 0.69 16 35 H 0.07 1.26 7.98 -51.93 -0.41 0.84 16 36 H 0.18 2.23 2.72 -58.74 -0.16 2.07 16 37 H 0.14 1.22 6.73 -52.49 -0.35 0.87 16 38 H 0.18 1.19 7.04 -52.49 -0.37 0.82 16 39 H 0.15 0.89 8.06 -52.49 -0.42 0.47 16 40 H 0.19 1.07 8.06 -52.48 -0.42 0.65 16 41 H 0.14 1.72 7.68 -52.48 -0.40 1.32 16 42 H 0.14 1.89 7.66 -52.49 -0.40 1.49 16 43 H 0.09 1.52 6.63 -51.93 -0.34 1.18 16 44 H 0.07 0.82 6.73 -51.93 -0.35 0.47 16 45 H 0.39 9.22 6.10 -40.82 -0.25 8.98 16 46 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 LS Contribution 376.07 15.07 5.67 5.67 Total: -1.00 -31.76 376.07 -8.96 -40.72 By element: Atomic # 1 Polarization: 18.04 SS G_CDS: -5.87 Total: 12.17 kcal Atomic # 6 Polarization: -0.68 SS G_CDS: -4.04 Total: -4.72 kcal Atomic # 7 Polarization: -59.15 SS G_CDS: 0.22 Total: -58.93 kcal Atomic # 8 Polarization: -10.88 SS G_CDS: 0.09 Total: -10.79 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -31.76 -8.96 -40.72 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054733223.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 161.048 kcal (2) G-P(sol) polarization free energy of solvation -31.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 129.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.719 kcal (6) G-S(sol) free energy of system = (1) + (5) 120.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds