Wall clock time and date at job start Sat Apr 11 2020 06:06:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 110.91600 * 2 1 4 4 C 1.54903 * 111.00252 * 123.90540 * 2 1 3 5 5 N 1.47750 * 104.84321 * 155.16655 * 4 2 1 6 6 C 1.34772 * 125.82499 * 155.82320 * 5 4 2 7 7 O 1.21572 * 120.00042 * 354.23182 * 6 5 4 8 8 C 1.47669 * 119.99765 * 174.22883 * 6 5 4 9 9 C 1.39710 * 120.07954 * 6.97670 * 8 6 5 10 10 C 1.37717 * 119.92119 * 179.76596 * 9 8 6 11 11 C 1.39057 * 120.07957 * 0.48787 * 10 9 8 12 12 N 1.39836 * 119.92344 * 179.76499 * 11 10 9 13 13 C 1.35838 * 126.10156 * 0.02562 * 12 11 10 14 14 C 1.35284 * 107.61445 * 179.97438 * 13 12 11 15 15 C 1.39959 * 107.96769 * 0.02562 * 14 13 12 16 16 N 1.30822 * 108.36561 * 359.75005 * 15 14 13 17 17 C 1.39060 * 120.15410 * 359.78372 * 11 10 9 18 18 C 1.37719 * 120.07904 * 359.95985 * 17 11 10 19 19 C 1.47028 * 108.52401 * 335.75031 * 5 4 2 20 20 C 1.54320 * 107.40585 * 1.17867 * 19 5 4 21 21 H 1.08997 * 110.72503 * 140.47829 * 20 19 5 22 22 N 1.46506 * 110.72083 * 263.75752 * 20 19 5 23 23 C 1.36937 * 119.99473 * 273.54580 * 22 20 19 24 24 H 1.07998 * 120.00263 * 359.97438 * 23 22 20 25 25 C 1.38812 * 119.99499 * 179.97438 * 23 22 20 26 26 N 1.31618 * 120.00306 * 0.02562 * 25 23 22 27 27 Si 1.86797 * 119.99930 * 179.97438 * 25 23 22 28 28 H 1.48505 * 109.46669 * 89.99991 * 27 25 23 29 29 H 1.48494 * 109.47500 * 209.99887 * 27 25 23 30 30 H 1.48494 * 109.47263 * 330.00578 * 27 25 23 31 31 H 1.09003 * 109.47331 * 183.90222 * 1 2 3 32 32 H 1.09005 * 109.47189 * 303.89924 * 1 2 3 33 33 H 1.08997 * 109.47729 * 63.90043 * 1 2 3 34 34 H 1.09006 * 110.36545 * 273.91757 * 4 2 1 35 35 H 1.08993 * 110.37080 * 36.13378 * 4 2 1 36 36 H 1.08004 * 120.03795 * 359.97438 * 9 8 6 37 37 H 1.08001 * 119.96370 * 180.23269 * 10 9 8 38 38 H 1.07995 * 126.19421 * 359.97438 * 13 12 11 39 39 H 1.08001 * 126.02055 * 179.97438 * 14 13 12 40 40 H 1.08004 * 125.81529 * 179.97438 * 15 14 13 41 41 H 1.08003 * 119.96114 * 179.97438 * 17 11 10 42 42 H 1.07997 * 120.03931 * 179.97438 * 18 17 11 43 43 H 1.09001 * 109.87734 * 241.68125 * 19 5 4 44 44 H 1.08997 * 109.88392 * 120.67703 * 19 5 4 45 45 H 0.96996 * 119.99894 * 93.54027 * 22 20 19 46 46 H 0.97003 * 120.00214 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9191 1.0182 0.0000 4 6 2.0852 -0.8067 1.2002 5 7 3.4308 -1.2425 0.7733 6 6 4.4538 -1.5596 1.5915 7 8 4.3447 -1.3988 2.7916 8 6 5.7071 -2.1026 1.0302 9 6 5.8907 -2.1524 -0.3539 10 6 7.0628 -2.6549 -0.8737 11 6 8.0588 -3.1218 -0.0231 12 7 9.2456 -3.6359 -0.5546 13 6 9.5542 -3.7368 -1.8736 14 6 10.7883 -4.2836 -1.9646 15 6 11.2501 -4.5258 -0.6658 16 7 10.3306 -4.1342 0.1784 17 6 7.8772 -3.0790 1.3550 18 6 6.7097 -2.5729 1.8819 19 6 3.4673 -1.2742 -0.6961 20 6 2.0860 -0.8079 -1.2023 21 1 2.1920 -0.1699 -2.0797 22 7 1.2266 -1.9575 -1.4963 23 6 1.2814 -2.5563 -2.7265 24 1 1.9577 -2.1810 -3.4802 25 6 0.4675 -3.6458 -3.0048 26 7 -0.3572 -4.1029 -2.0865 27 14 0.5415 -4.4624 -4.6832 28 1 1.5596 -5.5433 -4.6632 29 1 -0.7866 -5.0393 -5.0121 30 1 0.9108 -3.4537 -5.7086 31 1 -0.3634 -1.0253 0.0699 32 1 -0.3634 0.5732 0.8530 33 1 -0.3634 0.4521 -0.9228 34 1 2.1559 -0.1720 2.0836 35 1 1.4507 -1.6693 1.4036 36 1 5.1157 -1.7941 -1.0153 37 1 7.2069 -2.6903 -1.9435 38 1 8.9279 -3.4352 -2.7000 39 1 11.3228 -4.4967 -2.8786 40 1 12.2047 -4.9585 -0.4048 41 1 8.6526 -3.4428 2.0128 42 1 6.5692 -2.5403 2.9522 43 1 3.6649 -2.2894 -1.0402 44 1 4.2427 -0.6014 -1.0623 45 1 0.6190 -2.2943 -0.8194 46 1 -0.9262 -4.8640 -2.2811 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001054733223.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:25 Heat of formation + Delta-G solvation = 101.888897 kcal Electronic energy + Delta-G solvation = -28941.391967 eV Core-core repulsion = 25026.616519 eV Total energy + Delta-G solvation = -3914.775448 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.51908 -41.60109 -39.78287 -38.83732 -35.76098 -34.81349 -33.90969 -32.58412 -32.05646 -31.14396 -30.35417 -29.46505 -27.47124 -25.99741 -25.11367 -24.21550 -23.51929 -21.85643 -21.58529 -20.95936 -20.68884 -19.39432 -19.19815 -18.28247 -17.44095 -16.84718 -16.46741 -16.28374 -16.20572 -16.04922 -15.78827 -15.48063 -15.15546 -14.98426 -14.75097 -14.56453 -14.25516 -14.12805 -13.95257 -13.70098 -13.64918 -13.33667 -13.11763 -13.01709 -12.87614 -12.75818 -12.38640 -12.22297 -12.09607 -11.85322 -11.63373 -11.46132 -11.39533 -11.33785 -11.15653 -10.82502 -10.23689 -10.19771 -9.71268 -9.14549 -8.96585 -7.88563 -5.16540 -0.61242 0.18057 0.89653 1.31213 1.52850 1.53443 1.61359 1.77187 1.83810 1.95017 2.60746 2.71128 3.32113 3.38656 3.43172 3.65182 3.73756 3.84128 3.89502 3.92829 3.94218 4.07884 4.13620 4.24340 4.38293 4.41361 4.54327 4.58653 4.64656 4.70647 4.71708 4.83966 4.85579 4.91633 4.98033 5.01771 5.05462 5.09284 5.12386 5.21078 5.30147 5.35104 5.47229 5.57809 5.63353 5.67926 6.08785 6.32344 6.46475 6.57967 7.01571 7.40587 8.14990 8.37140 9.34779 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.009710 B = 0.003288 C = 0.002592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2882.897867 B = 8514.465559 C =10800.430143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.099 4.099 3 H 0.112 0.888 4 C 0.113 3.887 5 N -0.601 5.601 6 C 0.566 3.434 7 O -0.586 6.586 8 C -0.158 4.158 9 C -0.087 4.087 10 C -0.144 4.144 11 C 0.179 3.821 12 N -0.344 5.344 13 C 0.044 3.956 14 C -0.258 4.258 15 C 0.057 3.943 16 N -0.334 5.334 17 C -0.140 4.140 18 C -0.041 4.041 19 C 0.065 3.935 20 C 0.161 3.839 21 H 0.090 0.910 22 N -0.723 5.723 23 C -0.231 4.231 24 H 0.089 0.911 25 C -0.074 4.074 26 N -0.970 5.970 27 Si 0.964 3.036 28 H -0.293 1.293 29 H -0.306 1.306 30 H -0.263 1.263 31 H 0.037 0.963 32 H 0.069 0.931 33 H 0.059 0.941 34 H 0.078 0.922 35 H 0.048 0.952 36 H 0.185 0.815 37 H 0.167 0.833 38 H 0.209 0.791 39 H 0.185 0.815 40 H 0.220 0.780 41 H 0.142 0.858 42 H 0.139 0.861 43 H 0.073 0.927 44 H 0.104 0.896 45 H 0.375 0.625 46 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.369 6.289 -1.079 20.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.118 4.118 3 H 0.130 0.870 4 C -0.009 4.009 5 N -0.332 5.332 6 C 0.358 3.642 7 O -0.469 6.469 8 C -0.162 4.162 9 C -0.105 4.105 10 C -0.164 4.164 11 C 0.086 3.914 12 N -0.120 5.120 13 C -0.096 4.096 14 C -0.286 4.286 15 C -0.130 4.130 16 N -0.152 5.152 17 C -0.160 4.160 18 C -0.060 4.060 19 C -0.060 4.060 20 C 0.051 3.949 21 H 0.108 0.892 22 N -0.363 5.363 23 C -0.363 4.363 24 H 0.106 0.894 25 C -0.266 4.266 26 N -0.621 5.621 27 Si 0.795 3.205 28 H -0.221 1.221 29 H -0.234 1.234 30 H -0.188 1.188 31 H 0.056 0.944 32 H 0.088 0.912 33 H 0.078 0.922 34 H 0.096 0.904 35 H 0.067 0.933 36 H 0.201 0.799 37 H 0.185 0.815 38 H 0.226 0.774 39 H 0.202 0.798 40 H 0.237 0.763 41 H 0.160 0.840 42 H 0.157 0.843 43 H 0.091 0.909 44 H 0.121 0.879 45 H 0.208 0.792 46 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 19.026 6.460 0.614 20.102 hybrid contribution -0.310 -1.317 -0.985 1.674 sum 18.716 5.143 -0.371 19.413 Atomic orbital electron populations 1.21474 0.93486 1.01339 1.02049 1.22588 0.96724 0.99396 0.93120 0.87002 1.22363 0.82035 0.97972 0.98565 1.48416 1.11844 1.64931 1.07993 1.18198 0.83323 0.77483 0.85234 1.90710 1.83187 1.56951 1.16036 1.19901 0.94983 1.06282 0.95018 1.22904 0.98075 0.94875 0.94633 1.21079 0.92260 1.01966 1.01136 1.17983 0.84072 0.95928 0.93459 1.46140 1.12499 1.47962 1.05425 1.23528 0.98868 1.00462 0.86715 1.22086 0.96677 1.10210 0.99601 1.24785 0.99408 0.97171 0.91684 1.77409 0.96193 1.19881 1.21751 1.20801 0.98693 1.03124 0.93379 1.21127 0.90952 0.93373 1.00590 1.23665 1.01627 1.02089 0.78617 1.21566 0.88124 0.88791 0.96440 0.89186 1.42646 1.46015 1.33947 1.13657 1.19672 1.16919 1.08186 0.91498 0.89352 1.25470 0.99804 1.00509 1.00849 1.69816 1.28945 1.28210 1.35122 0.85266 0.75839 0.78633 0.80771 1.22058 1.23357 1.18755 0.94381 0.91219 0.92153 0.90382 0.93340 0.79870 0.81512 0.77434 0.79783 0.76336 0.83989 0.84324 0.90931 0.87855 0.79184 0.94439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.61 8.85 71.98 0.64 -2.97 16 2 C -0.10 -2.70 3.51 -9.40 -0.03 -2.73 16 3 H 0.11 2.44 8.14 -2.39 -0.02 2.42 16 4 C 0.11 3.55 6.40 86.79 0.56 4.11 16 5 N -0.60 -19.28 3.34 -829.87 -2.77 -22.05 16 6 C 0.57 19.66 7.81 86.74 0.68 20.34 16 7 O -0.59 -23.79 16.61 -3.94 -0.07 -23.85 16 8 C -0.16 -4.68 5.88 -20.07 -0.12 -4.80 16 9 C -0.09 -2.12 8.60 22.50 0.19 -1.93 16 10 C -0.14 -3.04 9.44 22.34 0.21 -2.82 16 11 C 0.18 4.34 6.69 38.26 0.26 4.59 16 12 N -0.34 -7.80 3.81 -187.28 -0.71 -8.51 16 13 C 0.04 0.71 10.81 83.39 0.90 1.62 16 14 C -0.26 -3.52 10.80 22.01 0.24 -3.28 16 15 C 0.06 0.92 12.02 85.26 1.02 1.95 16 16 N -0.33 -7.88 11.85 -56.97 -0.67 -8.55 16 17 C -0.14 -3.62 9.64 22.34 0.22 -3.41 16 18 C -0.04 -1.15 9.58 22.50 0.22 -0.93 16 19 C 0.06 1.85 4.60 86.73 0.40 2.25 16 20 C 0.16 5.10 3.37 46.18 0.16 5.25 16 21 H 0.09 2.60 8.12 -2.39 -0.02 2.58 16 22 N -0.72 -31.27 4.61 -317.32 -1.46 -32.74 16 23 C -0.23 -11.18 9.98 84.03 0.84 -10.34 16 24 H 0.09 3.92 7.83 -2.91 -0.02 3.90 16 25 C -0.07 -3.93 5.50 84.86 0.47 -3.46 16 26 N -0.97 -56.50 13.06 21.65 0.28 -56.22 16 27 Si 0.96 43.03 29.55 68.60 2.03 45.06 16 28 H -0.29 -13.06 7.11 99.48 0.71 -12.35 16 29 H -0.31 -14.28 7.11 99.48 0.71 -13.57 16 30 H -0.26 -10.79 7.11 99.48 0.71 -10.09 16 31 H 0.04 1.34 6.38 -2.39 -0.02 1.33 16 32 H 0.07 1.65 8.14 -2.38 -0.02 1.63 16 33 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 34 H 0.08 2.36 8.00 -2.38 -0.02 2.34 16 35 H 0.05 1.75 7.98 -2.39 -0.02 1.73 16 36 H 0.18 4.14 2.72 -8.78 -0.02 4.12 16 37 H 0.17 2.35 6.73 -2.91 -0.02 2.33 16 38 H 0.21 1.88 7.04 -2.91 -0.02 1.86 16 39 H 0.18 1.30 8.06 -2.91 -0.02 1.28 16 40 H 0.22 1.82 8.06 -2.91 -0.02 1.80 16 41 H 0.14 3.55 7.68 -2.91 -0.02 3.53 16 42 H 0.14 3.88 7.66 -2.91 -0.02 3.86 16 43 H 0.07 2.37 6.63 -2.39 -0.02 2.36 16 44 H 0.10 2.23 6.73 -2.39 -0.02 2.21 16 45 H 0.37 18.26 6.10 -92.71 -0.57 17.69 16 46 H 0.25 14.24 8.31 -92.71 -0.77 13.46 16 Total: -1.00 -71.20 376.07 3.90 -67.30 By element: Atomic # 1 Polarization: 35.69 SS G_CDS: 0.44 Total: 36.13 kcal Atomic # 6 Polarization: -3.41 SS G_CDS: 6.83 Total: 3.42 kcal Atomic # 7 Polarization: -122.73 SS G_CDS: -5.34 Total: -128.07 kcal Atomic # 8 Polarization: -23.79 SS G_CDS: -0.07 Total: -23.85 kcal Atomic # 14 Polarization: 43.03 SS G_CDS: 2.03 Total: 45.06 kcal Total: -71.20 3.90 -67.30 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054733223.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 169.191 kcal (2) G-P(sol) polarization free energy of solvation -71.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.302 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds