Wall clock time and date at job start Sat Apr 11 2020 06:06:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09004 * 110.78075 * 2 1 4 4 C 1.54363 * 110.75692 * 123.24582 * 2 1 3 5 5 N 1.47026 * 107.28899 * 140.50637 * 4 2 1 6 6 C 1.34782 * 125.64719 * 181.12876 * 5 4 2 7 7 O 1.21517 * 120.00009 * 356.37648 * 6 5 4 8 8 C 1.48156 * 119.99880 * 176.37197 * 6 5 4 9 9 C 1.39956 * 120.88910 * 25.15878 * 8 6 5 10 10 C 1.38034 * 119.13710 * 179.97438 * 9 8 6 11 11 N 1.31860 * 120.98324 * 0.02562 * 10 9 8 12 12 C 1.32229 * 121.97107 * 359.97438 * 11 10 9 13 13 N 1.39794 * 119.62484 * 180.02562 * 12 11 10 14 14 C 1.36647 * 125.67500 * 179.69178 * 13 12 11 15 15 C 1.34810 * 108.19111 * 179.83049 * 14 13 12 16 16 C 1.40984 * 107.48627 * 0.42261 * 15 14 13 17 17 C 1.34810 * 107.48477 * 359.73920 * 16 15 14 18 18 C 1.38924 * 120.74577 * 359.71905 * 12 11 10 19 19 C 1.47416 * 108.70385 * 1.09483 * 5 4 2 20 20 C 1.54912 * 104.83226 * 335.87208 * 19 5 4 21 21 H 1.09001 * 111.00298 * 278.89970 * 20 19 5 22 22 N 1.46499 * 111.00399 * 155.08328 * 20 19 5 23 23 C 1.36935 * 119.99947 * 89.58356 * 22 20 19 24 24 H 1.08000 * 120.00236 * 359.97438 * 23 22 20 25 25 C 1.38810 * 120.00342 * 179.97438 * 23 22 20 26 26 N 1.31619 * 119.99773 * 359.97438 * 25 23 22 27 27 Si 1.86795 * 120.00453 * 179.97438 * 25 23 22 28 28 H 1.48504 * 109.47229 * 179.97438 * 27 25 23 29 29 H 1.48502 * 109.47268 * 300.00185 * 27 25 23 30 30 H 1.48504 * 109.47208 * 59.99871 * 27 25 23 31 31 H 1.08996 * 109.46829 * 183.23064 * 1 2 3 32 32 H 1.08994 * 109.47265 * 303.23787 * 1 2 3 33 33 H 1.09000 * 109.47013 * 63.23711 * 1 2 3 34 34 H 1.08999 * 109.84805 * 21.10114 * 4 2 1 35 35 H 1.09006 * 110.03378 * 260.02091 * 4 2 1 36 36 H 1.07997 * 120.43043 * 0.02562 * 9 8 6 37 37 H 1.08003 * 119.50585 * 179.97438 * 10 9 8 38 38 H 1.07999 * 125.90595 * 359.97438 * 14 13 12 39 39 H 1.07997 * 126.26227 * 180.15906 * 15 14 13 40 40 H 1.07998 * 126.25743 * 179.75434 * 16 15 14 41 41 H 1.07998 * 125.90278 * 179.97438 * 17 16 15 42 42 H 1.08003 * 120.53078 * 180.31230 * 18 12 11 43 43 H 1.09004 * 110.36963 * 217.03479 * 19 5 4 44 44 H 1.09003 * 110.36986 * 94.70607 * 19 5 4 45 45 H 0.96993 * 120.00430 * 269.57804 * 22 20 19 46 46 H 0.97002 * 120.00499 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9167 1.0191 0.0000 4 6 2.0771 -0.7913 1.2072 5 7 3.2449 -1.5515 0.7383 6 6 3.9918 -2.3860 1.4884 7 8 3.7589 -2.5096 2.6746 8 6 5.0966 -3.1526 0.8665 9 6 5.7278 -2.6902 -0.2939 10 6 6.7537 -3.4332 -0.8425 11 7 7.1424 -4.5656 -0.2900 12 6 6.5753 -5.0408 0.8060 13 7 7.0269 -6.2465 1.3506 14 6 6.5368 -6.8453 2.4769 15 6 7.2224 -7.9884 2.6781 16 6 8.1769 -8.0972 1.6462 17 6 8.0358 -7.0194 0.8488 18 6 5.5401 -4.3522 1.4258 19 6 3.4633 -1.2506 -0.6882 20 6 2.0790 -0.7953 -1.2138 21 1 1.4448 -1.6531 -1.4379 22 7 2.2216 0.0698 -2.3875 23 6 2.2522 -0.4780 -3.6421 24 1 2.1717 -1.5478 -3.7664 25 6 2.3867 0.3417 -4.7543 26 7 2.4843 1.6455 -4.6029 27 14 2.4293 -0.4056 -6.4657 28 1 2.5782 0.6746 -7.4739 29 1 3.5777 -1.3414 -6.5689 30 1 1.1652 -1.1439 -6.7151 31 1 -0.3633 -1.0260 0.0579 32 1 -0.3633 0.5632 0.8595 33 1 -0.3633 0.4628 -0.9176 34 1 1.3138 -1.4756 1.5778 35 1 2.3754 -0.1048 1.9996 36 1 5.4169 -1.7638 -0.7536 37 1 7.2447 -3.0822 -1.7381 38 1 5.7367 -6.4691 3.0971 39 1 7.0713 -8.6903 3.4848 40 1 8.8904 -8.8976 1.5179 41 1 8.6196 -6.8039 -0.0339 42 1 5.0827 -4.7410 2.3236 43 1 3.7952 -2.1436 -1.2179 44 1 4.1936 -0.4490 -0.7994 45 1 2.2941 1.0305 -2.2759 46 1 2.5780 2.2184 -5.3800 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054767895.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:36 Heat of formation + Delta-G solvation = 90.893618 kcal Electronic energy + Delta-G solvation = -28784.752870 eV Core-core repulsion = 24869.500631 eV Total energy + Delta-G solvation = -3915.252239 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.94104 -40.63017 -39.35223 -37.72911 -34.35694 -33.80555 -33.04526 -32.32344 -30.86966 -29.59207 -29.10371 -27.80154 -26.82159 -24.75217 -23.99951 -23.81844 -21.92134 -20.90486 -20.45792 -20.06714 -19.74090 -18.46767 -17.34775 -17.15902 -16.38460 -16.18533 -15.91873 -15.55649 -15.51307 -14.68213 -14.65967 -14.19215 -13.99927 -13.74218 -13.70110 -13.50967 -13.32490 -13.15100 -12.89880 -12.81492 -12.57828 -12.42332 -12.18858 -11.92122 -11.76388 -11.22382 -11.10826 -10.84292 -10.74119 -10.45696 -10.38624 -10.28568 -10.10072 -10.05283 -9.89774 -9.79009 -9.12458 -8.61343 -8.46106 -8.44384 -7.21997 -5.96509 -3.28338 0.38718 0.57323 2.09673 2.30922 2.74872 2.79886 2.89351 3.32257 3.38088 3.38758 3.57817 4.01950 4.18257 4.42930 4.44825 4.62933 4.69263 4.81474 4.94685 5.00034 5.06974 5.14999 5.19807 5.27160 5.39601 5.41364 5.45216 5.50815 5.56589 5.68630 5.72260 5.77323 5.86657 5.98896 6.01050 6.05693 6.05836 6.13174 6.19545 6.29602 6.32049 6.49190 6.65685 6.69977 6.79972 7.12397 7.45660 7.52356 7.56036 7.99757 8.20475 9.32919 9.84616 10.19714 11.24889 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.011818 B = 0.002911 C = 0.002438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2368.760132 B = 9615.355930 C =11482.195694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.114 4.114 3 H 0.086 0.914 4 C 0.116 3.884 5 N -0.600 5.600 6 C 0.569 3.431 7 O -0.539 6.539 8 C -0.050 4.050 9 C -0.165 4.165 10 C 0.135 3.865 11 N -0.491 5.491 12 C 0.342 3.658 13 N -0.394 5.394 14 C -0.015 4.015 15 C -0.183 4.183 16 C -0.199 4.199 17 C 0.013 3.987 18 C -0.134 4.134 19 C 0.058 3.942 20 C 0.177 3.823 21 H 0.069 0.931 22 N -0.708 5.708 23 C -0.253 4.253 24 H 0.072 0.928 25 C -0.004 4.004 26 N -0.928 5.928 27 Si 0.907 3.093 28 H -0.290 1.290 29 H -0.284 1.284 30 H -0.285 1.285 31 H 0.052 0.948 32 H 0.050 0.950 33 H 0.069 0.931 34 H 0.069 0.931 35 H 0.067 0.933 36 H 0.167 0.833 37 H 0.176 0.824 38 H 0.168 0.832 39 H 0.143 0.857 40 H 0.142 0.858 41 H 0.170 0.830 42 H 0.150 0.850 43 H 0.079 0.921 44 H 0.078 0.922 45 H 0.388 0.612 46 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.040 -11.038 12.098 17.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.134 4.134 3 H 0.105 0.895 4 C -0.006 4.006 5 N -0.332 5.332 6 C 0.357 3.643 7 O -0.418 6.418 8 C -0.061 4.061 9 C -0.186 4.186 10 C -0.022 4.022 11 N -0.204 5.204 12 C 0.114 3.886 13 N -0.069 5.069 14 C -0.141 4.141 15 C -0.207 4.207 16 C -0.223 4.223 17 C -0.113 4.113 18 C -0.157 4.157 19 C -0.068 4.068 20 C 0.064 3.936 21 H 0.087 0.913 22 N -0.348 5.348 23 C -0.384 4.384 24 H 0.090 0.910 25 C -0.201 4.201 26 N -0.574 5.574 27 Si 0.738 3.262 28 H -0.216 1.216 29 H -0.210 1.210 30 H -0.211 1.211 31 H 0.071 0.929 32 H 0.069 0.931 33 H 0.088 0.912 34 H 0.087 0.913 35 H 0.085 0.915 36 H 0.184 0.816 37 H 0.193 0.807 38 H 0.185 0.815 39 H 0.161 0.839 40 H 0.160 0.840 41 H 0.187 0.813 42 H 0.168 0.832 43 H 0.098 0.902 44 H 0.096 0.904 45 H 0.222 0.778 46 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 6.501 -11.421 12.081 17.851 hybrid contribution -0.439 0.417 -0.668 0.902 sum 6.062 -11.004 11.413 16.973 Atomic orbital electron populations 1.21664 0.93702 1.01635 1.02215 1.22530 0.96678 0.99863 0.94305 0.89529 1.22080 0.86910 0.94446 0.97184 1.48376 1.29564 1.42704 1.12549 1.17707 0.81529 0.79404 0.85685 1.90772 1.70110 1.66231 1.14674 1.20113 0.96228 0.94679 0.95090 1.23142 0.96878 1.03270 0.95288 1.22647 0.93194 0.88052 0.98325 1.66847 1.29180 1.15091 1.09265 1.18068 0.92231 0.86769 0.91491 1.41462 1.28378 1.15533 1.21550 1.21961 1.04194 0.96541 0.91383 1.21025 0.99573 0.98326 1.01778 1.21055 1.03446 0.99965 0.97865 1.22076 0.94293 0.92957 1.02004 1.21520 0.97243 0.95197 1.01727 1.24013 1.03316 1.00923 0.78532 1.21390 0.91493 0.93902 0.86818 0.91323 1.42285 1.86689 1.05537 1.00259 1.19170 1.43832 0.92164 0.83236 0.91019 1.24761 1.02004 0.95351 0.98025 1.69641 1.55819 1.02310 1.29647 0.86280 0.78010 0.77879 0.84055 1.21594 1.21046 1.21111 0.92851 0.93080 0.91184 0.91257 0.91469 0.81560 0.80723 0.81481 0.83890 0.84026 0.81312 0.83235 0.90234 0.90398 0.77755 0.93166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.74 9.16 37.16 0.34 -1.40 16 2 C -0.11 -1.60 3.19 -88.76 -0.28 -1.89 16 3 H 0.09 1.25 8.00 -51.93 -0.42 0.83 16 4 C 0.12 1.57 6.47 -3.04 -0.02 1.55 16 5 N -0.60 -8.71 3.33 -171.49 -0.57 -9.28 16 6 C 0.57 8.71 7.70 -12.18 -0.09 8.62 16 7 O -0.54 -9.53 17.02 5.35 0.09 -9.44 16 8 C -0.05 -0.68 5.75 -104.68 -0.60 -1.28 16 9 C -0.17 -2.01 8.06 -39.01 -0.31 -2.32 16 10 C 0.14 1.55 11.17 -17.61 -0.20 1.35 16 11 N -0.49 -6.39 9.80 -12.35 -0.12 -6.51 16 12 C 0.34 4.50 7.48 -154.47 -1.16 3.34 16 13 N -0.39 -4.90 2.97 -62.68 -0.19 -5.09 16 14 C -0.02 -0.17 10.72 -16.62 -0.18 -0.34 16 15 C -0.18 -1.84 10.86 -39.76 -0.43 -2.27 16 16 C -0.20 -2.05 10.86 -39.76 -0.43 -2.48 16 17 C 0.01 0.15 11.00 -16.62 -0.18 -0.03 16 18 C -0.13 -1.74 9.06 -38.82 -0.35 -2.10 16 19 C 0.06 0.86 4.73 -2.53 -0.01 0.85 16 20 C 0.18 2.97 3.14 -65.78 -0.21 2.77 16 21 H 0.07 1.21 8.02 -51.93 -0.42 0.79 16 22 N -0.71 -15.22 5.26 -51.35 -0.27 -15.49 16 23 C -0.25 -6.22 9.97 -15.06 -0.15 -6.37 16 24 H 0.07 1.72 7.83 -52.49 -0.41 1.30 16 25 C 0.00 -0.11 5.50 -17.43 -0.10 -0.21 16 26 N -0.93 -25.63 13.06 55.49 0.72 -24.91 16 27 Si 0.91 20.69 29.55 -169.99 -5.02 15.67 16 28 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 29 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 30 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 31 H 0.05 0.66 8.06 -51.93 -0.42 0.24 16 32 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 34 H 0.07 0.91 7.77 -51.93 -0.40 0.51 16 35 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 36 H 0.17 1.96 4.52 -52.49 -0.24 1.72 16 37 H 0.18 1.51 8.06 -52.48 -0.42 1.08 16 38 H 0.17 1.46 6.98 -52.49 -0.37 1.10 16 39 H 0.14 1.10 8.06 -52.49 -0.42 0.68 16 40 H 0.14 1.14 8.06 -52.49 -0.42 0.71 16 41 H 0.17 1.75 8.04 -52.49 -0.42 1.33 16 42 H 0.15 1.80 6.55 -52.48 -0.34 1.45 16 43 H 0.08 1.17 6.05 -51.93 -0.31 0.85 16 44 H 0.08 1.18 7.37 -51.93 -0.38 0.80 16 45 H 0.39 8.97 7.73 -40.82 -0.32 8.65 16 46 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 LS Contribution 380.94 15.07 5.74 5.74 Total: -1.00 -29.86 380.94 -10.10 -39.96 By element: Atomic # 1 Polarization: 17.67 SS G_CDS: -6.12 Total: 11.55 kcal Atomic # 6 Polarization: 2.16 SS G_CDS: -4.37 Total: -2.21 kcal Atomic # 7 Polarization: -60.84 SS G_CDS: -0.42 Total: -61.27 kcal Atomic # 8 Polarization: -9.53 SS G_CDS: 0.09 Total: -9.44 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.67 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -29.86 -10.10 -39.96 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054767895.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.852 kcal (2) G-P(sol) polarization free energy of solvation -29.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.958 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds