Wall clock time and date at job start Sat Apr 11 2020 06:06:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09004 * 110.78075 * 2 1 4 4 C 1.54363 * 110.75692 * 123.24582 * 2 1 3 5 5 N 1.47026 * 107.28899 * 140.50637 * 4 2 1 6 6 C 1.34782 * 125.64719 * 181.12876 * 5 4 2 7 7 O 1.21517 * 120.00009 * 356.37648 * 6 5 4 8 8 C 1.48156 * 119.99880 * 176.37197 * 6 5 4 9 9 C 1.39956 * 120.88910 * 25.15878 * 8 6 5 10 10 C 1.38034 * 119.13710 * 179.97438 * 9 8 6 11 11 N 1.31860 * 120.98324 * 0.02562 * 10 9 8 12 12 C 1.32229 * 121.97107 * 359.97438 * 11 10 9 13 13 N 1.39794 * 119.62484 * 180.02562 * 12 11 10 14 14 C 1.36647 * 125.67500 * 179.69178 * 13 12 11 15 15 C 1.34810 * 108.19111 * 179.83049 * 14 13 12 16 16 C 1.40984 * 107.48627 * 0.42261 * 15 14 13 17 17 C 1.34810 * 107.48477 * 359.73920 * 16 15 14 18 18 C 1.38924 * 120.74577 * 359.71905 * 12 11 10 19 19 C 1.47416 * 108.70385 * 1.09483 * 5 4 2 20 20 C 1.54912 * 104.83226 * 335.87208 * 19 5 4 21 21 H 1.09001 * 111.00298 * 278.89970 * 20 19 5 22 22 N 1.46499 * 111.00399 * 155.08328 * 20 19 5 23 23 C 1.36935 * 119.99947 * 89.58356 * 22 20 19 24 24 H 1.08000 * 120.00236 * 359.97438 * 23 22 20 25 25 C 1.38810 * 120.00342 * 179.97438 * 23 22 20 26 26 N 1.31619 * 119.99773 * 359.97438 * 25 23 22 27 27 Si 1.86795 * 120.00453 * 179.97438 * 25 23 22 28 28 H 1.48504 * 109.47229 * 179.97438 * 27 25 23 29 29 H 1.48502 * 109.47268 * 300.00185 * 27 25 23 30 30 H 1.48504 * 109.47208 * 59.99871 * 27 25 23 31 31 H 1.08996 * 109.46829 * 183.23064 * 1 2 3 32 32 H 1.08994 * 109.47265 * 303.23787 * 1 2 3 33 33 H 1.09000 * 109.47013 * 63.23711 * 1 2 3 34 34 H 1.08999 * 109.84805 * 21.10114 * 4 2 1 35 35 H 1.09006 * 110.03378 * 260.02091 * 4 2 1 36 36 H 1.07997 * 120.43043 * 0.02562 * 9 8 6 37 37 H 1.08003 * 119.50585 * 179.97438 * 10 9 8 38 38 H 1.07999 * 125.90595 * 359.97438 * 14 13 12 39 39 H 1.07997 * 126.26227 * 180.15906 * 15 14 13 40 40 H 1.07998 * 126.25743 * 179.75434 * 16 15 14 41 41 H 1.07998 * 125.90278 * 179.97438 * 17 16 15 42 42 H 1.08003 * 120.53078 * 180.31230 * 18 12 11 43 43 H 1.09004 * 110.36963 * 217.03479 * 19 5 4 44 44 H 1.09003 * 110.36986 * 94.70607 * 19 5 4 45 45 H 0.96993 * 120.00430 * 269.57804 * 22 20 19 46 46 H 0.97002 * 120.00499 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9167 1.0191 0.0000 4 6 2.0771 -0.7913 1.2072 5 7 3.2449 -1.5515 0.7383 6 6 3.9918 -2.3860 1.4884 7 8 3.7589 -2.5096 2.6746 8 6 5.0966 -3.1526 0.8665 9 6 5.7278 -2.6902 -0.2939 10 6 6.7537 -3.4332 -0.8425 11 7 7.1424 -4.5656 -0.2900 12 6 6.5753 -5.0408 0.8060 13 7 7.0269 -6.2465 1.3506 14 6 6.5368 -6.8453 2.4769 15 6 7.2224 -7.9884 2.6781 16 6 8.1769 -8.0972 1.6462 17 6 8.0358 -7.0194 0.8488 18 6 5.5401 -4.3522 1.4258 19 6 3.4633 -1.2506 -0.6882 20 6 2.0790 -0.7953 -1.2138 21 1 1.4448 -1.6531 -1.4379 22 7 2.2216 0.0698 -2.3875 23 6 2.2522 -0.4780 -3.6421 24 1 2.1717 -1.5478 -3.7664 25 6 2.3867 0.3417 -4.7543 26 7 2.4843 1.6455 -4.6029 27 14 2.4293 -0.4056 -6.4657 28 1 2.5782 0.6746 -7.4739 29 1 3.5777 -1.3414 -6.5689 30 1 1.1652 -1.1439 -6.7151 31 1 -0.3633 -1.0260 0.0579 32 1 -0.3633 0.5632 0.8595 33 1 -0.3633 0.4628 -0.9176 34 1 1.3138 -1.4756 1.5778 35 1 2.3754 -0.1048 1.9996 36 1 5.4169 -1.7638 -0.7536 37 1 7.2447 -3.0822 -1.7381 38 1 5.7367 -6.4691 3.0971 39 1 7.0713 -8.6903 3.4848 40 1 8.8904 -8.8976 1.5179 41 1 8.6196 -6.8039 -0.0339 42 1 5.0827 -4.7410 2.3236 43 1 3.7952 -2.1436 -1.2179 44 1 4.1936 -0.4490 -0.7994 45 1 2.2941 1.0305 -2.2759 46 1 2.5780 2.2184 -5.3800 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001054767895.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:35 Heat of formation + Delta-G solvation = 75.715375 kcal Electronic energy + Delta-G solvation = -28785.411048 eV Core-core repulsion = 24869.500631 eV Total energy + Delta-G solvation = -3915.910417 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.82226 -41.70701 -40.41157 -39.01313 -35.93861 -34.91573 -34.04152 -33.55407 -32.47402 -30.51382 -29.92578 -29.24592 -27.92025 -26.12564 -25.30580 -24.86600 -23.17653 -21.97961 -21.41431 -21.16748 -20.73609 -19.45999 -19.11254 -18.24943 -17.55356 -17.33722 -16.96288 -16.75794 -16.46314 -16.22029 -15.69633 -15.47984 -15.28764 -14.88354 -14.63343 -14.56317 -14.48286 -14.45765 -14.26974 -13.99756 -13.46861 -13.30940 -13.16259 -13.06291 -12.92472 -12.83918 -12.80581 -12.23450 -12.16326 -12.00129 -11.72318 -11.60285 -11.41706 -11.25728 -11.03816 -10.97737 -10.76479 -9.84311 -9.33434 -9.27639 -9.02472 -7.92627 -5.22008 -0.61791 -0.38380 1.20044 1.39809 1.52818 1.53609 1.59208 1.65355 1.76252 2.01650 2.57768 2.59781 2.98211 3.22367 3.37967 3.49969 3.57846 3.66658 3.75137 3.83356 3.91668 4.15508 4.20697 4.23552 4.28900 4.34880 4.42996 4.46163 4.53713 4.60697 4.64539 4.67158 4.76905 4.81729 4.86626 5.03244 5.08615 5.13088 5.19037 5.25269 5.30148 5.33292 5.45856 5.57354 5.84353 6.02010 6.23964 6.26730 6.28364 6.63842 6.79939 7.36941 8.07130 8.31692 9.29504 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.011818 B = 0.002911 C = 0.002438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2368.760132 B = 9615.355930 C =11482.195694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.103 4.103 3 H 0.084 0.916 4 C 0.118 3.882 5 N -0.598 5.598 6 C 0.570 3.430 7 O -0.566 6.566 8 C -0.061 4.061 9 C -0.163 4.163 10 C 0.139 3.861 11 N -0.502 5.502 12 C 0.335 3.665 13 N -0.405 5.405 14 C -0.031 4.031 15 C -0.184 4.184 16 C -0.198 4.198 17 C -0.010 4.010 18 C -0.138 4.138 19 C 0.071 3.929 20 C 0.170 3.830 21 H 0.064 0.936 22 N -0.717 5.717 23 C -0.240 4.240 24 H 0.078 0.922 25 C -0.063 4.063 26 N -0.963 5.963 27 Si 0.963 3.037 28 H -0.301 1.301 29 H -0.276 1.276 30 H -0.283 1.283 31 H 0.060 0.940 32 H 0.073 0.927 33 H 0.048 0.952 34 H 0.077 0.923 35 H 0.076 0.924 36 H 0.171 0.829 37 H 0.204 0.796 38 H 0.182 0.818 39 H 0.167 0.833 40 H 0.164 0.836 41 H 0.173 0.827 42 H 0.155 0.845 43 H 0.085 0.915 44 H 0.079 0.921 45 H 0.378 0.622 46 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.418 -12.515 12.760 18.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.123 4.123 3 H 0.102 0.898 4 C -0.004 4.004 5 N -0.329 5.329 6 C 0.359 3.641 7 O -0.446 6.446 8 C -0.072 4.072 9 C -0.184 4.184 10 C -0.018 4.018 11 N -0.215 5.215 12 C 0.108 3.892 13 N -0.081 5.081 14 C -0.156 4.156 15 C -0.208 4.208 16 C -0.222 4.222 17 C -0.136 4.136 18 C -0.161 4.161 19 C -0.054 4.054 20 C 0.059 3.941 21 H 0.082 0.918 22 N -0.355 5.355 23 C -0.372 4.372 24 H 0.096 0.904 25 C -0.256 4.256 26 N -0.613 5.613 27 Si 0.792 3.208 28 H -0.227 1.227 29 H -0.202 1.202 30 H -0.209 1.209 31 H 0.079 0.921 32 H 0.092 0.908 33 H 0.068 0.932 34 H 0.096 0.904 35 H 0.094 0.906 36 H 0.188 0.812 37 H 0.221 0.779 38 H 0.199 0.801 39 H 0.184 0.816 40 H 0.181 0.819 41 H 0.191 0.809 42 H 0.172 0.828 43 H 0.103 0.897 44 H 0.097 0.903 45 H 0.211 0.789 46 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 6.878 -12.955 12.779 19.454 hybrid contribution -0.551 0.789 -0.772 1.234 sum 6.327 -12.166 12.007 18.226 Atomic orbital electron populations 1.21625 0.92666 1.02300 1.02169 1.22435 0.97488 0.99340 0.93028 0.89777 1.22130 0.86782 0.94596 0.96932 1.48359 1.29741 1.42606 1.12197 1.17909 0.81658 0.79161 0.85351 1.90754 1.70997 1.67110 1.15742 1.20051 0.96291 0.95035 0.95859 1.23171 0.97003 1.03377 0.94833 1.23125 0.92658 0.87294 0.98741 1.66931 1.29483 1.15675 1.09432 1.18230 0.92239 0.87168 0.91579 1.41632 1.28876 1.15508 1.22118 1.22397 1.04878 0.96991 0.91342 1.21410 0.98949 0.98320 1.02153 1.21420 1.03500 0.99928 0.97319 1.22351 0.94763 0.93619 1.02829 1.21557 0.97412 0.95159 1.01983 1.23713 1.01757 1.01101 0.78795 1.21531 0.92607 0.93541 0.86426 0.91837 1.42348 1.86901 1.05524 1.00770 1.19508 1.40943 0.92375 0.84372 0.90421 1.25408 1.03440 0.95723 1.01078 1.69776 1.58393 1.03382 1.29764 0.85383 0.78115 0.76846 0.80414 1.22740 1.20170 1.20895 0.92133 0.90791 0.93249 0.90426 0.90607 0.81224 0.77915 0.80089 0.81566 0.81889 0.80929 0.82770 0.89725 0.90338 0.78875 0.94040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.17 9.16 71.98 0.66 -2.51 16 2 C -0.10 -2.77 3.19 -9.59 -0.03 -2.80 16 3 H 0.08 2.34 8.00 -2.38 -0.02 2.32 16 4 C 0.12 2.98 6.47 86.74 0.56 3.54 16 5 N -0.60 -16.52 3.33 -814.75 -2.71 -19.23 16 6 C 0.57 16.87 7.70 86.88 0.67 17.54 16 7 O -0.57 -19.52 17.02 -3.77 -0.06 -19.58 16 8 C -0.06 -1.60 5.75 -19.90 -0.11 -1.72 16 9 C -0.16 -3.75 8.06 22.64 0.18 -3.57 16 10 C 0.14 2.96 11.17 84.64 0.95 3.90 16 11 N -0.50 -12.49 9.80 -192.98 -1.89 -14.38 16 12 C 0.33 8.56 7.48 132.79 0.99 9.56 16 13 N -0.41 -9.74 2.97 -352.21 -1.04 -10.79 16 14 C -0.03 -0.65 10.72 83.16 0.89 0.24 16 15 C -0.18 -3.37 10.86 22.16 0.24 -3.13 16 16 C -0.20 -3.73 10.86 22.16 0.24 -3.49 16 17 C -0.01 -0.23 11.00 83.16 0.91 0.69 16 18 C -0.14 -3.50 9.06 22.76 0.21 -3.30 16 19 C 0.07 2.04 4.73 86.86 0.41 2.45 16 20 C 0.17 5.55 3.14 46.38 0.15 5.69 16 21 H 0.06 2.16 8.02 -2.39 -0.02 2.14 16 22 N -0.72 -30.55 5.26 -316.38 -1.66 -32.22 16 23 C -0.24 -11.66 9.97 84.03 0.84 -10.83 16 24 H 0.08 3.62 7.83 -2.91 -0.02 3.60 16 25 C -0.06 -3.29 5.50 84.86 0.47 -2.82 16 26 N -0.96 -53.95 13.06 21.65 0.28 -53.67 16 27 Si 0.96 42.47 29.55 68.60 2.03 44.49 16 28 H -0.30 -13.69 7.11 99.48 0.71 -12.98 16 29 H -0.28 -11.64 7.11 99.48 0.71 -10.93 16 30 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 31 H 0.06 1.38 8.06 -2.39 -0.02 1.36 16 32 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 33 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 34 H 0.08 1.87 7.77 -2.39 -0.02 1.85 16 35 H 0.08 1.83 8.14 -2.38 -0.02 1.81 16 36 H 0.17 3.74 4.52 -2.91 -0.01 3.72 16 37 H 0.20 3.00 8.06 -2.91 -0.02 2.98 16 38 H 0.18 2.98 6.98 -2.91 -0.02 2.96 16 39 H 0.17 2.13 8.06 -2.91 -0.02 2.11 16 40 H 0.16 2.24 8.06 -2.91 -0.02 2.21 16 41 H 0.17 3.48 8.04 -2.91 -0.02 3.46 16 42 H 0.15 3.64 6.55 -2.91 -0.02 3.62 16 43 H 0.08 2.35 6.05 -2.39 -0.01 2.34 16 44 H 0.08 2.28 7.37 -2.39 -0.02 2.26 16 45 H 0.38 17.59 7.73 -92.71 -0.72 16.88 16 46 H 0.25 13.87 8.31 -92.71 -0.77 13.10 16 Total: -1.00 -63.20 380.94 3.45 -59.74 By element: Atomic # 1 Polarization: 35.86 SS G_CDS: 0.30 Total: 36.16 kcal Atomic # 6 Polarization: 1.24 SS G_CDS: 8.22 Total: 9.46 kcal Atomic # 7 Polarization: -123.25 SS G_CDS: -7.03 Total: -130.28 kcal Atomic # 8 Polarization: -19.52 SS G_CDS: -0.06 Total: -19.58 kcal Atomic # 14 Polarization: 42.47 SS G_CDS: 2.03 Total: 44.49 kcal Total: -63.20 3.45 -59.74 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054767895.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.459 kcal (2) G-P(sol) polarization free energy of solvation -63.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.744 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds