Wall clock time and date at job start Sat Apr 11 2020 06:06:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09001 * 110.63423 * 2 1 4 4 C 1.54322 * 110.71898 * 123.13700 * 2 1 3 5 5 N 1.47026 * 107.27156 * 140.73766 * 4 2 1 6 6 C 1.34774 * 125.65009 * 181.02498 * 5 4 2 7 7 O 1.21636 * 119.99823 * 5.08061 * 6 5 4 8 8 C 1.47079 * 119.99861 * 185.08264 * 6 5 4 9 9 C 1.38069 * 126.49301 * 6.49880 * 8 6 5 10 10 C 1.39263 * 107.69539 * 180.26565 * 9 8 6 11 11 N 1.31017 * 108.82319 * 359.97438 * 10 9 8 12 12 N 1.36943 * 126.49517 * 186.81289 * 8 6 5 13 13 C 1.40027 * 126.16566 * 359.75210 * 12 8 6 14 14 C 1.38878 * 120.06879 * 315.23733 * 13 12 8 15 15 C 1.38113 * 119.92403 * 179.72453 * 14 13 12 16 16 C 1.38286 * 120.06946 * 0.54341 * 15 14 13 17 17 C 1.38287 * 120.14325 * 359.72982 * 16 15 14 18 18 C 1.38101 * 120.07099 * 359.97438 * 17 16 15 19 19 C 1.47428 * 108.70038 * 1.28843 * 5 4 2 20 20 C 1.55133 * 104.72382 * 335.55094 * 19 5 4 21 21 H 1.09001 * 110.93950 * 155.28736 * 20 19 5 22 22 N 1.46492 * 111.19297 * 279.19393 * 20 19 5 23 23 C 1.36935 * 119.99877 * 265.24276 * 22 20 19 24 24 H 1.07999 * 119.99866 * 4.77572 * 23 22 20 25 25 C 1.38815 * 120.00299 * 184.77973 * 23 22 20 26 26 N 1.31621 * 120.00031 * 179.97438 * 25 23 22 27 27 Si 1.86800 * 119.99792 * 0.02562 * 25 23 22 28 28 H 1.48501 * 109.47386 * 90.00032 * 27 25 23 29 29 H 1.48501 * 109.46827 * 210.00322 * 27 25 23 30 30 H 1.48501 * 109.46862 * 329.99771 * 27 25 23 31 31 H 1.08990 * 109.47708 * 298.31044 * 1 2 3 32 32 H 1.09001 * 109.46753 * 58.31669 * 1 2 3 33 33 H 1.09005 * 109.46742 * 178.31129 * 1 2 3 34 34 H 1.09000 * 109.88200 * 21.32281 * 4 2 1 35 35 H 1.08994 * 110.01487 * 260.22629 * 4 2 1 36 36 H 1.07999 * 126.15893 * 0.25868 * 9 8 6 37 37 H 1.07993 * 125.58954 * 180.02562 * 10 9 8 38 38 H 1.07997 * 120.04203 * 359.97438 * 14 13 12 39 39 H 1.08004 * 119.96295 * 180.25443 * 15 14 13 40 40 H 1.07999 * 119.92734 * 179.70009 * 16 15 14 41 41 H 1.08001 * 119.96111 * 180.02562 * 17 16 15 42 42 H 1.08000 * 120.03862 * 180.02562 * 18 17 16 43 43 H 1.09004 * 110.36770 * 94.47752 * 19 5 4 44 44 H 1.09001 * 110.36782 * 216.80450 * 19 5 4 45 45 H 0.97005 * 120.00535 * 85.24526 * 22 20 19 46 46 H 0.97001 * 119.99824 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9142 1.0201 0.0000 4 6 2.0760 -0.7890 1.2087 5 7 3.2472 -1.5460 0.7428 6 6 3.9958 -2.3766 1.4953 7 8 3.6676 -2.6215 2.6406 8 6 5.2095 -2.9866 0.9315 9 6 5.7731 -2.7088 -0.2979 10 6 6.9037 -3.5101 -0.4360 11 7 7.0371 -4.2424 0.6421 12 7 5.9914 -3.9421 1.5240 13 6 5.7830 -4.5154 2.7844 14 6 5.4558 -3.7119 3.8688 15 6 5.2453 -4.2811 5.1095 16 6 5.3711 -5.6483 5.2748 17 6 5.7024 -6.4505 4.1982 18 6 5.9082 -5.8881 2.9538 19 6 3.4708 -1.2412 -0.6822 20 6 2.0829 -0.7949 -1.2124 21 1 2.1881 -0.1516 -2.0861 22 7 1.2345 -1.9504 -1.5137 23 6 1.1824 -2.4478 -2.7885 24 1 1.8241 -2.0382 -3.5545 25 6 0.3049 -3.4784 -3.0962 26 7 0.2545 -3.9561 -4.3216 27 14 -0.8056 -4.1864 -1.7713 28 1 -2.0869 -3.4362 -1.7464 29 1 -1.0751 -5.6171 -2.0640 30 1 -0.1372 -4.0687 -0.4504 31 1 -0.3634 0.4873 0.9046 32 1 -0.3633 0.5398 -0.8745 33 1 -0.3633 -1.0273 -0.0303 34 1 1.3141 -1.4753 1.5781 35 1 2.3706 -0.1010 2.0010 36 1 5.4036 -1.9981 -1.0223 37 1 7.5630 -3.5247 -1.2913 38 1 5.3620 -2.6436 3.7414 39 1 4.9867 -3.6573 5.9523 40 1 5.2107 -6.0905 6.2470 41 1 5.7995 -7.5179 4.3306 42 1 6.1665 -6.5152 2.1132 43 1 4.1971 -0.4353 -0.7883 44 1 3.8104 -2.1313 -1.2118 45 1 0.7095 -2.3633 -0.8102 46 1 -0.3589 -4.6760 -4.5367 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054802504.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:39 Heat of formation + Delta-G solvation = 115.859551 kcal Electronic energy + Delta-G solvation = -29981.304552 eV Core-core repulsion = 26067.134917 eV Total energy + Delta-G solvation = -3914.169635 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.64032 -39.71109 -38.95205 -37.71445 -34.25094 -33.43774 -32.69891 -31.21690 -30.97933 -30.30154 -29.05360 -28.33393 -26.41663 -24.25269 -23.52724 -22.98670 -22.66388 -21.25206 -20.86100 -19.58211 -19.54584 -17.92494 -17.68140 -16.52832 -16.38759 -16.02437 -15.59184 -15.52310 -14.82936 -14.60117 -14.43678 -14.16691 -13.99430 -13.87515 -13.61386 -13.43215 -13.04607 -12.83929 -12.79037 -12.59459 -12.47553 -12.16392 -11.82492 -11.67509 -11.55898 -11.29212 -11.13712 -11.00059 -10.73893 -10.57120 -10.34690 -10.16034 -10.07677 -9.93827 -9.67604 -9.13082 -9.12562 -8.94061 -8.50026 -8.28032 -7.39849 -5.88865 -3.26032 0.68410 1.30978 1.50458 2.11365 2.52660 3.10489 3.28044 3.30351 3.33822 3.39513 3.63865 4.34538 4.49197 4.58421 4.78694 4.82240 4.85628 4.93898 5.01294 5.04724 5.18120 5.22066 5.27984 5.40201 5.48578 5.48768 5.55599 5.57083 5.69935 5.72832 5.76800 5.88343 5.89979 5.96170 6.09352 6.15985 6.22255 6.24664 6.28648 6.35109 6.39195 6.51092 6.53535 6.61545 6.63206 7.06789 7.45962 7.56423 7.86018 8.12085 8.30182 9.07038 9.79739 9.97812 11.28666 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.011287 B = 0.003736 C = 0.003640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2480.236498 B = 7493.667850 C = 7691.510853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.118 4.118 3 H 0.086 0.914 4 C 0.117 3.883 5 N -0.586 5.586 6 C 0.592 3.408 7 O -0.539 6.539 8 C 0.042 3.958 9 C -0.218 4.218 10 C 0.045 3.955 11 N -0.271 5.271 12 N -0.296 5.296 13 C 0.136 3.864 14 C -0.067 4.067 15 C -0.113 4.113 16 C -0.114 4.114 17 C -0.119 4.119 18 C -0.102 4.102 19 C 0.052 3.948 20 C 0.178 3.822 21 H 0.089 0.911 22 N -0.732 5.732 23 C -0.252 4.252 24 H 0.094 0.906 25 C 0.014 3.986 26 N -0.927 5.927 27 Si 0.877 3.123 28 H -0.281 1.281 29 H -0.290 1.290 30 H -0.279 1.279 31 H 0.048 0.952 32 H 0.065 0.935 33 H 0.060 0.940 34 H 0.068 0.932 35 H 0.066 0.934 36 H 0.175 0.825 37 H 0.195 0.805 38 H 0.136 0.864 39 H 0.129 0.871 40 H 0.125 0.875 41 H 0.129 0.871 42 H 0.129 0.871 43 H 0.069 0.931 44 H 0.097 0.903 45 H 0.364 0.636 46 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.937 4.933 14.525 18.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.138 4.138 3 H 0.105 0.895 4 C -0.005 4.005 5 N -0.317 5.317 6 C 0.379 3.621 7 O -0.418 6.418 8 C -0.085 4.085 9 C -0.247 4.247 10 C -0.139 4.139 11 N -0.092 5.092 12 N -0.075 5.075 13 C 0.046 3.954 14 C -0.087 4.087 15 C -0.132 4.132 16 C -0.132 4.132 17 C -0.137 4.137 18 C -0.122 4.122 19 C -0.073 4.073 20 C 0.065 3.935 21 H 0.106 0.894 22 N -0.373 5.373 23 C -0.382 4.382 24 H 0.112 0.888 25 C -0.182 4.182 26 N -0.574 5.574 27 Si 0.707 3.293 28 H -0.208 1.208 29 H -0.216 1.216 30 H -0.205 1.205 31 H 0.067 0.933 32 H 0.084 0.916 33 H 0.079 0.921 34 H 0.086 0.914 35 H 0.084 0.916 36 H 0.192 0.808 37 H 0.212 0.788 38 H 0.153 0.847 39 H 0.147 0.853 40 H 0.143 0.857 41 H 0.147 0.853 42 H 0.147 0.853 43 H 0.087 0.913 44 H 0.115 0.885 45 H 0.198 0.802 46 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 11.463 3.782 15.536 19.675 hybrid contribution -1.273 -0.187 0.258 1.312 sum 10.191 3.595 15.794 19.137 Atomic orbital electron populations 1.21616 0.93534 1.02696 1.01243 1.22614 0.97082 0.99017 0.95099 0.89520 1.22045 0.87161 0.94316 0.96982 1.48019 1.28652 1.42895 1.12163 1.16560 0.81840 0.78865 0.84857 1.90817 1.71732 1.61673 1.17585 1.21073 0.95800 0.96338 0.95264 1.22640 0.98484 1.06506 0.97104 1.23925 0.98113 0.94818 0.97041 1.77473 1.07088 1.23039 1.01601 1.45964 1.19047 1.29452 1.13015 1.17396 1.04406 0.92137 0.81476 1.21195 0.96061 1.00718 0.90704 1.20966 1.00487 0.95093 0.96672 1.21241 0.99166 0.93847 0.98972 1.20960 1.00703 1.00057 0.92012 1.21019 1.00078 0.92553 0.98547 1.23982 1.01594 1.01672 0.80084 1.21372 0.87985 0.89223 0.94878 0.89361 1.42736 1.52340 1.33462 1.08793 1.19046 1.18642 1.14624 0.85848 0.88831 1.24640 0.99013 0.98833 0.95763 1.69684 1.40377 1.29635 1.17667 0.86684 0.81674 0.78955 0.82002 1.20750 1.21619 1.20518 0.93326 0.91636 0.92111 0.91382 0.91605 0.80797 0.78837 0.84652 0.85338 0.85658 0.85317 0.85317 0.91313 0.88500 0.80196 0.92892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.82 8.81 37.16 0.33 -1.49 16 2 C -0.12 -1.56 3.41 -88.78 -0.30 -1.86 16 3 H 0.09 0.93 8.14 -51.93 -0.42 0.50 16 4 C 0.12 1.68 6.46 -3.06 -0.02 1.66 16 5 N -0.59 -9.21 3.32 -171.77 -0.57 -9.78 16 6 C 0.59 10.25 7.70 -12.68 -0.10 10.15 16 7 O -0.54 -10.11 12.77 5.25 0.07 -10.04 16 8 C 0.04 0.70 6.72 -82.06 -0.55 0.15 16 9 C -0.22 -3.08 9.12 -39.26 -0.36 -3.43 16 10 C 0.04 0.59 11.97 -17.52 -0.21 0.38 16 11 N -0.27 -4.24 12.41 30.53 0.38 -3.86 16 12 N -0.30 -4.93 3.73 -7.08 -0.03 -4.96 16 13 C 0.14 2.16 6.01 -83.64 -0.50 1.66 16 14 C -0.07 -0.98 7.37 -39.39 -0.29 -1.27 16 15 C -0.11 -1.37 10.04 -39.61 -0.40 -1.77 16 16 C -0.11 -1.23 10.04 -39.55 -0.40 -1.63 16 17 C -0.12 -1.36 10.04 -39.61 -0.40 -1.76 16 18 C -0.10 -1.44 9.88 -39.39 -0.39 -1.83 16 19 C 0.05 0.76 4.83 -2.41 -0.01 0.75 16 20 C 0.18 2.87 3.48 -65.66 -0.23 2.64 16 21 H 0.09 1.38 8.08 -51.93 -0.42 0.96 16 22 N -0.73 -15.57 4.32 -51.24 -0.22 -15.79 16 23 C -0.25 -6.52 10.43 -15.06 -0.16 -6.67 16 24 H 0.09 2.55 8.06 -52.49 -0.42 2.13 16 25 C 0.01 0.40 5.50 -17.43 -0.10 0.30 16 26 N -0.93 -27.95 13.97 55.49 0.78 -27.18 16 27 Si 0.88 21.72 27.78 -169.99 -4.72 17.00 16 28 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 29 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 30 H -0.28 -6.74 6.45 56.52 0.36 -6.38 16 31 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 33 H 0.06 0.99 6.41 -51.93 -0.33 0.65 16 34 H 0.07 1.08 7.82 -51.93 -0.41 0.68 16 35 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.17 2.12 4.78 -52.49 -0.25 1.87 16 37 H 0.19 1.75 8.06 -52.49 -0.42 1.33 16 38 H 0.14 2.09 6.37 -52.49 -0.33 1.75 16 39 H 0.13 1.25 8.06 -52.48 -0.42 0.82 16 40 H 0.13 0.98 8.06 -52.49 -0.42 0.56 16 41 H 0.13 1.12 8.06 -52.49 -0.42 0.70 16 42 H 0.13 1.76 8.06 -52.49 -0.42 1.34 16 43 H 0.07 0.79 7.79 -51.93 -0.40 0.39 16 44 H 0.10 1.59 5.82 -51.93 -0.30 1.29 16 45 H 0.36 8.04 4.28 -40.82 -0.17 7.87 16 46 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 LS Contribution 371.36 15.07 5.60 5.60 Total: -1.00 -32.92 371.36 -8.83 -41.75 By element: Atomic # 1 Polarization: 17.32 SS G_CDS: -6.03 Total: 11.29 kcal Atomic # 6 Polarization: 0.05 SS G_CDS: -4.08 Total: -4.03 kcal Atomic # 7 Polarization: -61.90 SS G_CDS: 0.34 Total: -61.56 kcal Atomic # 8 Polarization: -10.11 SS G_CDS: 0.07 Total: -10.04 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -4.72 Total: 17.00 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -32.92 -8.83 -41.75 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054802504.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 157.608 kcal (2) G-P(sol) polarization free energy of solvation -32.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 124.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.749 kcal (6) G-S(sol) free energy of system = (1) + (5) 115.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds