Wall clock time and date at job start Sat Apr 11 2020 06:06:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08995 * 110.91980 * 2 1 4 4 C 1.54909 * 111.00071 * 236.09806 * 2 1 3 5 5 N 1.47430 * 104.83124 * 204.91799 * 4 2 1 6 6 C 1.34776 * 125.64661 * 204.09907 * 5 4 2 7 7 O 1.21636 * 120.00174 * 5.04095 * 6 5 4 8 8 C 1.47072 * 119.99652 * 185.04756 * 6 5 4 9 9 C 1.38073 * 126.49929 * 354.09861 * 8 6 5 10 10 C 1.39250 * 107.69842 * 180.22863 * 9 8 6 11 11 N 1.31026 * 108.82711 * 359.61695 * 10 9 8 12 12 N 1.36956 * 126.49273 * 174.10073 * 8 6 5 13 13 C 1.40017 * 126.16676 * 359.97438 * 12 8 6 14 14 C 1.38883 * 120.06898 * 315.66214 * 13 12 8 15 15 C 1.38114 * 119.92346 * 179.72204 * 14 13 12 16 16 C 1.38283 * 120.07331 * 0.55621 * 15 14 13 17 17 C 1.38294 * 120.13974 * 359.72150 * 16 15 14 18 18 C 1.38103 * 120.07250 * 0.02562 * 17 16 15 19 19 C 1.47016 * 108.70302 * 24.35643 * 5 4 2 20 20 C 1.54334 * 107.26589 * 358.58590 * 19 5 4 21 21 H 1.09000 * 111.00640 * 219.59786 * 20 19 5 22 22 N 1.46503 * 110.51674 * 96.45020 * 20 19 5 23 23 C 1.36936 * 120.00249 * 96.18085 * 22 20 19 24 24 H 1.08002 * 119.99833 * 354.98474 * 23 22 20 25 25 C 1.38812 * 120.00645 * 174.98833 * 23 22 20 26 26 N 1.31619 * 119.99606 * 359.97438 * 25 23 22 27 27 Si 1.86792 * 120.00299 * 180.02562 * 25 23 22 28 28 H 1.48501 * 109.47330 * 359.97438 * 27 25 23 29 29 H 1.48497 * 109.47320 * 119.99717 * 27 25 23 30 30 H 1.48505 * 109.47210 * 239.99338 * 27 25 23 31 31 H 1.08998 * 109.46999 * 182.44862 * 1 2 3 32 32 H 1.08998 * 109.46670 * 302.44593 * 1 2 3 33 33 H 1.08996 * 109.46793 * 62.44595 * 1 2 3 34 34 H 1.08999 * 110.36478 * 86.08005 * 4 2 1 35 35 H 1.08998 * 110.46364 * 323.80093 * 4 2 1 36 36 H 1.08000 * 126.14808 * 359.96746 * 9 8 6 37 37 H 1.08001 * 125.58647 * 179.73479 * 10 9 8 38 38 H 1.07999 * 120.03993 * 0.02562 * 14 13 12 39 39 H 1.07994 * 119.95938 * 180.25516 * 15 14 13 40 40 H 1.08000 * 119.93005 * 179.69811 * 16 15 14 41 41 H 1.08003 * 119.96372 * 180.02562 * 17 16 15 42 42 H 1.08007 * 120.03578 * 180.02562 * 18 17 16 43 43 H 1.08997 * 109.88355 * 118.13142 * 19 5 4 44 44 H 1.09002 * 109.88394 * 239.29680 * 19 5 4 45 45 H 0.97000 * 119.99912 * 276.18471 * 22 20 19 46 46 H 0.97001 * 120.00201 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9192 1.0181 0.0000 4 6 2.0852 -0.8066 -1.2003 5 7 3.4271 -1.2432 -0.7734 6 6 4.4476 -1.5616 -1.5941 7 8 4.3310 -1.4127 -2.7957 8 6 5.7022 -2.0893 -1.0369 9 6 6.0218 -2.2052 0.3014 10 6 7.3024 -2.7456 0.3855 11 7 7.7507 -2.9617 -0.8266 12 7 6.7750 -2.5589 -1.7471 13 6 6.8776 -2.6248 -3.1419 14 6 5.8106 -3.0945 -3.8967 15 6 5.9130 -3.1529 -5.2728 16 6 7.0803 -2.7552 -5.8983 17 6 8.1467 -2.2924 -5.1491 18 6 8.0488 -2.2267 -3.7731 19 6 3.4658 -1.2795 0.6958 20 6 2.0862 -0.8080 1.2022 21 1 2.1892 -0.1708 2.0805 22 7 1.2268 -1.9575 1.4961 23 6 1.1325 -2.4320 2.7771 24 1 1.7521 -2.0120 3.5556 25 6 0.2406 -3.4531 3.0753 26 7 -0.5149 -3.9647 2.1267 27 14 0.1115 -4.0999 4.8229 28 1 1.0606 -3.3625 5.6950 29 1 -1.2735 -3.9050 5.3218 30 1 0.4450 -5.5469 4.8411 31 1 -0.3633 -1.0267 0.0439 32 1 -0.3632 0.5513 0.8672 33 1 -0.3633 0.4754 -0.9111 34 1 2.1559 -0.1720 -2.0837 35 1 1.4525 -1.6704 -1.4043 36 1 5.3934 -1.9232 1.1332 37 1 7.8376 -2.9544 1.3000 38 1 4.9000 -3.4091 -3.4085 39 1 5.0821 -3.5141 -5.8606 40 1 7.1596 -2.8064 -6.9742 41 1 9.0569 -1.9821 -5.6406 42 1 8.8819 -1.8648 -3.1886 43 1 3.6601 -2.2965 1.0365 44 1 4.2425 -0.6086 1.0630 45 1 0.7246 -2.3824 0.7833 46 1 -1.1385 -4.6779 2.3350 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054802505.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:41 Heat of formation + Delta-G solvation = 109.288975 kcal Electronic energy + Delta-G solvation = -29588.927266 eV Core-core repulsion = 25674.472709 eV Total energy + Delta-G solvation = -3914.454557 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.64431 -39.62802 -38.97063 -37.62070 -34.19905 -33.44510 -32.61269 -31.20887 -30.74210 -30.20638 -29.03723 -27.92422 -26.30043 -24.25808 -23.63802 -23.03961 -22.72011 -21.30091 -20.85430 -19.57811 -19.37580 -17.77863 -17.40712 -16.47584 -16.28276 -15.99917 -15.67442 -15.10746 -14.83866 -14.75313 -14.47516 -14.11038 -13.93119 -13.77638 -13.59405 -13.47898 -13.10049 -12.95739 -12.63730 -12.58546 -12.18539 -11.99615 -11.74869 -11.60180 -11.30029 -11.19662 -11.04496 -10.96757 -10.70604 -10.45748 -10.28355 -10.17911 -10.03631 -9.91116 -9.73043 -9.15240 -9.06068 -8.98567 -8.42106 -8.31230 -7.13287 -5.90132 -3.20960 0.65675 1.27481 1.50328 2.10146 2.50772 3.16755 3.27648 3.35865 3.41930 3.44352 3.61942 4.38312 4.47602 4.55649 4.79213 4.82132 4.92405 4.98721 5.07422 5.16955 5.25091 5.28446 5.37762 5.45573 5.48932 5.54032 5.56670 5.67558 5.75509 5.85321 5.86605 5.89662 6.08312 6.18619 6.19042 6.22042 6.25834 6.31697 6.36284 6.42666 6.48510 6.50876 6.59192 6.66301 6.93160 7.04267 7.45302 7.59019 7.62191 8.15127 8.27587 9.39590 9.92860 10.27728 11.31688 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.014645 B = 0.003067 C = 0.002824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1911.462000 B = 9126.839569 C = 9914.285231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.117 4.117 3 H 0.078 0.922 4 C 0.117 3.883 5 N -0.587 5.587 6 C 0.589 3.411 7 O -0.540 6.540 8 C 0.043 3.957 9 C -0.220 4.220 10 C 0.044 3.956 11 N -0.271 5.271 12 N -0.297 5.297 13 C 0.142 3.858 14 C -0.069 4.069 15 C -0.109 4.109 16 C -0.115 4.115 17 C -0.117 4.117 18 C -0.104 4.104 19 C 0.060 3.940 20 C 0.171 3.829 21 H 0.079 0.921 22 N -0.709 5.709 23 C -0.248 4.248 24 H 0.073 0.927 25 C -0.007 4.007 26 N -0.927 5.927 27 Si 0.906 3.094 28 H -0.279 1.279 29 H -0.291 1.291 30 H -0.292 1.292 31 H 0.075 0.925 32 H 0.058 0.942 33 H 0.043 0.957 34 H 0.073 0.927 35 H 0.074 0.926 36 H 0.176 0.824 37 H 0.194 0.806 38 H 0.130 0.870 39 H 0.130 0.870 40 H 0.126 0.874 41 H 0.129 0.871 42 H 0.128 0.872 43 H 0.087 0.913 44 H 0.064 0.936 45 H 0.386 0.614 46 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.292 6.138 -10.113 17.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.137 4.137 3 H 0.097 0.903 4 C -0.005 4.005 5 N -0.318 5.318 6 C 0.375 3.625 7 O -0.418 6.418 8 C -0.085 4.085 9 C -0.249 4.249 10 C -0.140 4.140 11 N -0.093 5.093 12 N -0.076 5.076 13 C 0.052 3.948 14 C -0.089 4.089 15 C -0.127 4.127 16 C -0.133 4.133 17 C -0.136 4.136 18 C -0.124 4.124 19 C -0.066 4.066 20 C 0.058 3.942 21 H 0.097 0.903 22 N -0.350 5.350 23 C -0.379 4.379 24 H 0.091 0.909 25 C -0.204 4.204 26 N -0.575 5.575 27 Si 0.737 3.263 28 H -0.204 1.204 29 H -0.218 1.218 30 H -0.219 1.219 31 H 0.094 0.906 32 H 0.077 0.923 33 H 0.062 0.938 34 H 0.092 0.908 35 H 0.092 0.908 36 H 0.193 0.807 37 H 0.211 0.789 38 H 0.147 0.853 39 H 0.148 0.852 40 H 0.144 0.856 41 H 0.146 0.854 42 H 0.146 0.854 43 H 0.105 0.895 44 H 0.083 0.917 45 H 0.222 0.778 46 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 14.215 5.717 -11.350 19.068 hybrid contribution -0.850 -0.357 1.426 1.698 sum 13.365 5.360 -9.925 17.489 Atomic orbital electron populations 1.21552 0.93093 1.03736 1.00499 1.22706 0.97219 0.98479 0.95330 0.90327 1.22354 0.81636 0.98698 0.97807 1.48108 1.11585 1.64121 1.08013 1.16576 0.81540 0.78861 0.85481 1.90835 1.82035 1.55149 1.13825 1.21145 0.91235 1.04011 0.92075 1.22736 0.98427 1.08294 0.95490 1.23929 0.95238 0.98812 0.96025 1.77471 1.12134 1.20966 0.98694 1.45958 1.11107 1.46489 1.04051 1.17373 0.96677 1.02805 0.77990 1.21085 0.97289 0.96333 0.94227 1.20977 0.98080 1.00188 0.93485 1.21235 0.93313 0.98686 1.00080 1.20953 0.99229 1.00623 0.92803 1.20967 0.96736 0.99786 0.94941 1.23768 1.01969 1.02557 0.78294 1.21246 0.88081 0.89865 0.94969 0.90280 1.42440 1.51927 1.32404 1.08190 1.19273 1.17566 1.14726 0.86354 0.90857 1.24770 0.98531 0.99496 0.97568 1.69664 1.27135 1.29245 1.31412 0.86140 0.77402 0.78543 0.84180 1.20429 1.21826 1.21860 0.90640 0.92273 0.93813 0.90850 0.90815 0.80686 0.78889 0.85261 0.85216 0.85613 0.85354 0.85408 0.89525 0.91748 0.77842 0.93385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.98 8.98 37.16 0.33 -1.64 16 2 C -0.12 -1.71 3.52 -88.47 -0.31 -2.02 16 3 H 0.08 1.02 8.14 -51.93 -0.42 0.59 16 4 C 0.12 1.80 6.33 -2.53 -0.02 1.78 16 5 N -0.59 -9.41 3.33 -171.91 -0.57 -9.98 16 6 C 0.59 10.07 7.44 -12.68 -0.09 9.98 16 7 O -0.54 -10.04 13.25 5.25 0.07 -9.97 16 8 C 0.04 0.69 6.75 -82.06 -0.55 0.13 16 9 C -0.22 -3.07 9.30 -39.27 -0.37 -3.44 16 10 C 0.04 0.56 11.96 -17.52 -0.21 0.35 16 11 N -0.27 -4.11 12.41 30.53 0.38 -3.73 16 12 N -0.30 -4.79 3.73 -7.08 -0.03 -4.82 16 13 C 0.14 2.17 5.92 -83.64 -0.49 1.68 16 14 C -0.07 -1.03 7.38 -39.39 -0.29 -1.32 16 15 C -0.11 -1.30 10.04 -39.61 -0.40 -1.70 16 16 C -0.11 -1.17 10.04 -39.54 -0.40 -1.57 16 17 C -0.12 -1.23 10.04 -39.61 -0.40 -1.63 16 18 C -0.10 -1.35 9.87 -39.39 -0.39 -1.74 16 19 C 0.06 0.92 4.73 -3.06 -0.01 0.90 16 20 C 0.17 2.89 3.42 -66.09 -0.23 2.66 16 21 H 0.08 1.30 8.06 -51.93 -0.42 0.88 16 22 N -0.71 -15.46 4.31 -51.64 -0.22 -15.68 16 23 C -0.25 -6.15 9.94 -15.06 -0.15 -6.30 16 24 H 0.07 1.75 7.83 -52.49 -0.41 1.34 16 25 C -0.01 -0.18 5.50 -17.43 -0.10 -0.28 16 26 N -0.93 -26.17 13.06 55.49 0.72 -25.45 16 27 Si 0.91 21.02 29.55 -169.99 -5.02 15.99 16 28 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 29 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 30 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 31 H 0.07 1.36 6.38 -51.93 -0.33 1.03 16 32 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.07 1.08 7.99 -51.93 -0.41 0.67 16 35 H 0.07 1.23 8.04 -51.93 -0.42 0.81 16 36 H 0.18 2.20 4.45 -52.49 -0.23 1.97 16 37 H 0.19 1.68 8.06 -52.49 -0.42 1.26 16 38 H 0.13 2.10 6.67 -52.49 -0.35 1.75 16 39 H 0.13 1.28 8.06 -52.49 -0.42 0.86 16 40 H 0.13 0.92 8.06 -52.49 -0.42 0.49 16 41 H 0.13 0.97 8.06 -52.48 -0.42 0.55 16 42 H 0.13 1.55 8.06 -52.48 -0.42 1.13 16 43 H 0.09 1.49 6.82 -51.93 -0.35 1.13 16 44 H 0.06 0.84 6.95 -51.93 -0.36 0.48 16 45 H 0.39 9.17 6.48 -40.82 -0.26 8.91 16 46 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 LS Contribution 374.81 15.07 5.65 5.65 Total: -1.00 -30.55 374.81 -9.17 -39.71 By element: Atomic # 1 Polarization: 18.48 SS G_CDS: -6.07 Total: 12.41 kcal Atomic # 6 Polarization: -0.07 SS G_CDS: -4.07 Total: -4.14 kcal Atomic # 7 Polarization: -59.94 SS G_CDS: 0.28 Total: -59.66 kcal Atomic # 8 Polarization: -10.04 SS G_CDS: 0.07 Total: -9.97 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 15.99 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -30.55 -9.17 -39.71 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054802505.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.004 kcal (2) G-P(sol) polarization free energy of solvation -30.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 118.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.715 kcal (6) G-S(sol) free energy of system = (1) + (5) 109.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds