Wall clock time and date at job start Sat Apr 11 2020 06:06:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08996 * 110.88954 * 2 1 4 4 C 1.54907 * 111.03199 * 123.90294 * 2 1 3 5 5 N 1.47427 * 104.82993 * 155.09580 * 4 2 1 6 6 C 1.34772 * 125.64980 * 155.91618 * 5 4 2 7 7 O 1.21637 * 119.99915 * 4.81077 * 6 5 4 8 8 C 1.47078 * 120.00194 * 184.81253 * 6 5 4 9 9 C 1.38068 * 126.49557 * 353.95589 * 8 6 5 10 10 C 1.39252 * 107.69667 * 179.84414 * 9 8 6 11 11 N 1.31013 * 108.82793 * 0.42919 * 10 9 8 12 12 N 1.36947 * 126.49410 * 174.27128 * 8 6 5 13 13 C 1.40023 * 126.17093 * 0.03674 * 12 8 6 14 14 C 1.38879 * 120.06799 * 315.67823 * 13 12 8 15 15 C 1.38107 * 119.92695 * 179.72060 * 14 13 12 16 16 C 1.38285 * 120.07009 * 0.55401 * 15 14 13 17 17 C 1.38287 * 120.14065 * 359.71985 * 16 15 14 18 18 C 1.38101 * 120.07361 * 0.02562 * 17 16 15 19 19 C 1.47022 * 108.70159 * 335.86963 * 5 4 2 20 20 C 1.54315 * 107.27295 * 1.05708 * 19 5 4 21 21 H 1.09002 * 110.87858 * 263.75861 * 20 19 5 22 22 N 1.46507 * 110.72203 * 140.55605 * 20 19 5 23 23 C 1.36933 * 120.00168 * 86.91573 * 22 20 19 24 24 H 1.08004 * 119.99811 * 5.03185 * 23 22 20 25 25 C 1.38810 * 120.00238 * 185.02697 * 23 22 20 26 26 N 1.31614 * 119.99864 * 359.97438 * 25 23 22 27 27 Si 1.86807 * 119.99937 * 180.02562 * 25 23 22 28 28 H 1.48501 * 109.46938 * 89.99605 * 27 25 23 29 29 H 1.48491 * 109.46704 * 209.99666 * 27 25 23 30 30 H 1.48502 * 109.46848 * 329.99990 * 27 25 23 31 31 H 1.08991 * 109.47670 * 183.88221 * 1 2 3 32 32 H 1.09004 * 109.46907 * 303.88911 * 1 2 3 33 33 H 1.09008 * 109.46926 * 63.88167 * 1 2 3 34 34 H 1.08997 * 110.36904 * 273.93339 * 4 2 1 35 35 H 1.08994 * 110.36881 * 36.14687 * 4 2 1 36 36 H 1.08003 * 126.15002 * 0.02562 * 9 8 6 37 37 H 1.07999 * 125.58464 * 180.14871 * 10 9 8 38 38 H 1.08006 * 120.03449 * 359.97438 * 14 13 12 39 39 H 1.07998 * 119.96542 * 180.29891 * 15 14 13 40 40 H 1.08001 * 119.92535 * 179.69962 * 16 15 14 41 41 H 1.08007 * 119.95974 * 180.02562 * 17 16 15 42 42 H 1.07999 * 120.03945 * 179.97438 * 18 17 16 43 43 H 1.09008 * 109.88036 * 241.63865 * 19 5 4 44 44 H 1.08998 * 109.88151 * 120.48032 * 19 5 4 45 45 H 0.96996 * 119.99673 * 266.64979 * 22 20 19 46 46 H 0.96998 * 119.99902 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9187 1.0183 0.0000 4 6 2.0860 -0.8065 1.2001 5 7 3.4279 -1.2423 0.7726 6 6 4.4488 -1.5606 1.5929 7 8 4.2769 -1.5843 2.7968 8 6 5.7707 -1.8793 1.0323 9 6 6.0862 -2.0070 -0.3057 10 6 7.4427 -2.3094 -0.3938 11 7 7.9405 -2.3757 0.8162 12 7 6.9206 -2.1114 1.7390 13 6 7.0527 -2.0893 3.1328 14 6 6.4673 -1.0690 3.8711 15 6 6.5946 -1.0532 5.2462 16 6 7.3137 -2.0456 5.8870 17 6 7.9026 -3.0597 5.1541 18 6 7.7746 -3.0841 3.7793 19 6 3.4677 -1.2732 -0.6968 20 6 2.0861 -0.8077 -1.2025 21 1 1.4453 -1.6614 -1.4231 22 7 2.2278 0.0500 -2.3818 23 6 2.2928 -0.5081 -3.6305 24 1 2.1583 -1.5726 -3.7538 25 6 2.5314 0.2942 -4.7378 26 7 2.6947 1.5915 -4.5875 27 14 2.6194 -0.4672 -6.4414 28 1 1.2649 -0.4763 -7.0500 29 1 3.5393 0.3293 -7.2925 30 1 3.1239 -1.8599 -6.3356 31 1 -0.3634 -1.0252 0.0696 32 1 -0.3633 0.5730 0.8531 33 1 -0.3633 0.4524 -0.9228 34 1 2.1567 -0.1719 2.0834 35 1 1.4520 -1.6694 1.4035 36 1 5.4043 -1.8902 -1.1351 37 1 7.9930 -2.4681 -1.3094 38 1 5.9097 -0.2911 3.3708 39 1 6.1356 -0.2628 5.8214 40 1 7.4158 -2.0282 6.9620 41 1 8.4632 -3.8335 5.6576 42 1 8.2351 -3.8762 3.2074 43 1 3.6657 -2.2884 -1.0410 44 1 4.2425 -0.5985 -1.0609 45 1 2.2716 1.0134 -2.2783 46 1 2.8618 2.1521 -5.3613 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054802507.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:47 Heat of formation + Delta-G solvation = 105.839193 kcal Electronic energy + Delta-G solvation = -29403.810183 eV Core-core repulsion = 25489.206032 eV Total energy + Delta-G solvation = -3914.604151 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.64446 -39.63574 -38.98796 -37.60170 -34.26579 -33.49973 -32.75912 -31.23766 -30.89241 -30.29050 -29.03761 -27.71476 -26.42149 -24.40450 -23.62587 -23.03249 -22.49152 -21.07643 -20.85286 -20.03597 -19.59402 -17.67543 -17.20292 -16.65278 -16.36139 -15.98017 -15.62137 -15.51463 -14.87471 -14.65059 -14.21595 -14.20009 -13.89737 -13.74487 -13.57888 -13.47657 -13.19149 -12.95535 -12.73398 -12.64174 -12.46438 -12.12503 -11.77401 -11.62845 -11.35835 -11.18813 -11.15122 -10.95823 -10.69858 -10.61046 -10.34248 -10.20162 -10.03093 -9.96552 -9.80458 -9.15397 -9.05714 -9.00744 -8.48914 -8.30964 -7.16367 -5.91213 -3.23016 0.64504 1.25065 1.48379 2.09544 2.52392 3.11028 3.23721 3.35637 3.41745 3.43212 3.59771 4.34143 4.48167 4.56474 4.76747 4.81764 4.86548 4.96009 5.02921 5.11803 5.16913 5.22706 5.39916 5.46037 5.49398 5.52783 5.56568 5.64632 5.71460 5.79100 5.83778 5.84539 5.90285 6.10258 6.16009 6.17063 6.21196 6.25330 6.33361 6.37481 6.40440 6.51495 6.52111 6.57997 6.77222 7.03768 7.45103 7.54823 7.58998 8.09637 8.26160 9.38219 9.90778 10.25972 11.30328 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.015175 B = 0.003050 C = 0.002642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1844.709173 B = 9178.171850 C =10594.549323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.114 4.114 3 H 0.085 0.915 4 C 0.118 3.882 5 N -0.593 5.593 6 C 0.590 3.410 7 O -0.540 6.540 8 C 0.037 3.963 9 C -0.216 4.216 10 C 0.045 3.955 11 N -0.271 5.271 12 N -0.299 5.299 13 C 0.143 3.857 14 C -0.070 4.070 15 C -0.109 4.109 16 C -0.115 4.115 17 C -0.117 4.117 18 C -0.105 4.105 19 C 0.061 3.939 20 C 0.177 3.823 21 H 0.068 0.932 22 N -0.710 5.710 23 C -0.251 4.251 24 H 0.073 0.927 25 C -0.005 4.005 26 N -0.927 5.927 27 Si 0.907 3.093 28 H -0.289 1.289 29 H -0.291 1.291 30 H -0.280 1.280 31 H 0.053 0.947 32 H 0.050 0.950 33 H 0.069 0.931 34 H 0.075 0.925 35 H 0.070 0.930 36 H 0.179 0.821 37 H 0.195 0.805 38 H 0.129 0.871 39 H 0.129 0.871 40 H 0.126 0.874 41 H 0.129 0.871 42 H 0.128 0.872 43 H 0.068 0.932 44 H 0.085 0.915 45 H 0.387 0.613 46 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.379 -6.626 16.442 18.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.134 4.134 3 H 0.104 0.896 4 C -0.004 4.004 5 N -0.325 5.325 6 C 0.377 3.623 7 O -0.418 6.418 8 C -0.089 4.089 9 C -0.245 4.245 10 C -0.138 4.138 11 N -0.092 5.092 12 N -0.078 5.078 13 C 0.053 3.947 14 C -0.091 4.091 15 C -0.128 4.128 16 C -0.134 4.134 17 C -0.135 4.135 18 C -0.124 4.124 19 C -0.064 4.064 20 C 0.064 3.936 21 H 0.086 0.914 22 N -0.350 5.350 23 C -0.382 4.382 24 H 0.091 0.909 25 C -0.202 4.202 26 N -0.574 5.574 27 Si 0.737 3.263 28 H -0.216 1.216 29 H -0.217 1.217 30 H -0.206 1.206 31 H 0.072 0.928 32 H 0.069 0.931 33 H 0.088 0.912 34 H 0.093 0.907 35 H 0.088 0.912 36 H 0.196 0.804 37 H 0.212 0.788 38 H 0.147 0.853 39 H 0.147 0.853 40 H 0.144 0.856 41 H 0.147 0.853 42 H 0.146 0.854 43 H 0.086 0.914 44 H 0.103 0.897 45 H 0.222 0.778 46 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 6.390 -6.945 17.685 20.045 hybrid contribution -0.477 0.037 -1.706 1.772 sum 5.913 -6.908 15.978 18.384 Atomic orbital electron populations 1.21614 0.93645 1.01657 1.02212 1.22651 0.96463 0.99853 0.94434 0.89639 1.22330 0.81823 0.98325 0.97971 1.48194 1.11525 1.64436 1.08324 1.16606 0.82115 0.78129 0.85455 1.90834 1.83473 1.53864 1.13665 1.21097 0.88899 1.06825 0.92129 1.22848 0.97389 1.08753 0.95534 1.23962 0.94482 0.99367 0.96038 1.77474 1.10961 1.22118 0.98641 1.45963 1.05214 1.52534 1.04069 1.17376 1.02351 0.96895 0.78082 1.21055 0.97003 0.96619 0.94375 1.20961 0.99074 0.99355 0.93392 1.21228 0.97479 0.94607 1.00075 1.20957 1.00539 0.99132 0.92908 1.20980 0.99290 0.97368 0.94812 1.23830 1.03886 1.01670 0.77054 1.21289 0.91425 0.93907 0.86948 0.91379 1.42355 1.86954 1.05262 1.00418 1.19220 1.42213 0.92947 0.83821 0.90935 1.24775 1.01826 0.95518 0.98103 1.69657 1.54786 1.03284 1.29675 0.86212 0.77478 0.78215 0.84381 1.21634 1.21712 1.20557 0.92751 0.93093 0.91218 0.90667 0.91154 0.80367 0.78785 0.85347 0.85278 0.85629 0.85344 0.85374 0.91426 0.89675 0.77835 0.93284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.70 9.31 37.16 0.35 -1.36 16 2 C -0.11 -1.64 3.25 -88.47 -0.29 -1.93 16 3 H 0.09 1.31 8.00 -51.93 -0.42 0.90 16 4 C 0.12 1.62 6.36 -2.53 -0.02 1.60 16 5 N -0.59 -9.11 3.33 -171.92 -0.57 -9.68 16 6 C 0.59 9.79 7.45 -12.68 -0.09 9.69 16 7 O -0.54 -9.62 13.30 5.25 0.07 -9.55 16 8 C 0.04 0.61 6.75 -82.06 -0.55 0.05 16 9 C -0.22 -3.17 9.30 -39.27 -0.36 -3.54 16 10 C 0.05 0.62 11.96 -17.52 -0.21 0.41 16 11 N -0.27 -4.17 12.41 30.53 0.38 -3.79 16 12 N -0.30 -4.81 3.73 -7.08 -0.03 -4.84 16 13 C 0.14 2.16 5.92 -83.64 -0.50 1.66 16 14 C -0.07 -1.00 7.37 -39.39 -0.29 -1.29 16 15 C -0.11 -1.25 10.04 -39.61 -0.40 -1.64 16 16 C -0.12 -1.14 10.04 -39.55 -0.40 -1.54 16 17 C -0.12 -1.20 10.04 -39.61 -0.40 -1.60 16 18 C -0.10 -1.34 9.87 -39.39 -0.39 -1.73 16 19 C 0.06 0.97 4.75 -3.07 -0.01 0.96 16 20 C 0.18 3.02 3.06 -66.09 -0.20 2.82 16 21 H 0.07 1.17 8.01 -51.93 -0.42 0.76 16 22 N -0.71 -15.57 5.17 -51.65 -0.27 -15.84 16 23 C -0.25 -6.23 9.98 -15.06 -0.15 -6.38 16 24 H 0.07 1.74 7.83 -52.48 -0.41 1.33 16 25 C -0.01 -0.14 5.50 -17.43 -0.10 -0.23 16 26 N -0.93 -26.03 13.06 55.49 0.72 -25.31 16 27 Si 0.91 20.86 29.55 -169.99 -5.02 15.84 16 28 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 29 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 30 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 31 H 0.05 0.64 8.07 -51.93 -0.42 0.22 16 32 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 33 H 0.07 1.01 8.14 -51.92 -0.42 0.59 16 34 H 0.07 1.01 8.09 -51.93 -0.42 0.59 16 35 H 0.07 0.90 7.98 -51.93 -0.41 0.48 16 36 H 0.18 2.54 4.46 -52.48 -0.23 2.31 16 37 H 0.20 1.90 8.06 -52.49 -0.42 1.48 16 38 H 0.13 1.96 6.66 -52.48 -0.35 1.61 16 39 H 0.13 1.18 8.06 -52.49 -0.42 0.76 16 40 H 0.13 0.87 8.06 -52.49 -0.42 0.45 16 41 H 0.13 0.95 8.06 -52.48 -0.42 0.53 16 42 H 0.13 1.56 8.06 -52.49 -0.42 1.14 16 43 H 0.07 1.03 7.10 -51.92 -0.37 0.66 16 44 H 0.09 1.49 6.65 -51.93 -0.35 1.14 16 45 H 0.39 9.21 7.73 -40.82 -0.32 8.90 16 46 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 LS Contribution 378.28 15.07 5.70 5.70 Total: -1.00 -30.17 378.28 -9.23 -39.40 By element: Atomic # 1 Polarization: 18.32 SS G_CDS: -6.20 Total: 12.11 kcal Atomic # 6 Polarization: -0.03 SS G_CDS: -4.01 Total: -4.05 kcal Atomic # 7 Polarization: -59.70 SS G_CDS: 0.24 Total: -59.46 kcal Atomic # 8 Polarization: -9.62 SS G_CDS: 0.07 Total: -9.55 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -30.17 -9.23 -39.40 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054802507.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.244 kcal (2) G-P(sol) polarization free energy of solvation -30.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 115.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.405 kcal (6) G-S(sol) free energy of system = (1) + (5) 105.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds