Wall clock time and date at job start Sat Apr 11 2020 06:06:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 110.64104 * 2 1 4 4 C 1.54327 * 110.72340 * 236.85492 * 2 1 3 5 5 N 1.47025 * 107.27105 * 219.44464 * 4 2 1 6 6 C 1.34774 * 125.64502 * 178.97339 * 5 4 2 7 7 O 1.21578 * 120.00110 * 0.02562 * 6 5 4 8 8 C 1.47668 * 119.99603 * 179.97438 * 6 5 4 9 9 C 1.41536 * 126.44152 * 179.71582 * 8 6 5 10 10 C 1.35351 * 105.55733 * 179.84461 * 9 8 6 11 11 N 1.35854 * 107.12359 * 0.41081 * 10 9 8 12 12 C 1.40117 * 124.95870 * 179.72475 * 11 10 9 13 13 C 1.38857 * 120.06914 * 359.70242 * 12 11 10 14 14 C 1.38116 * 119.93239 * 179.74131 * 13 12 11 15 15 C 1.38285 * 120.06688 * 0.56096 * 14 13 12 16 16 C 1.38286 * 120.13564 * 359.68771 * 15 14 13 17 17 C 1.38115 * 120.06839 * 0.03228 * 16 15 14 18 18 N 1.28480 * 110.08416 * 359.72688 * 11 10 9 19 19 C 1.47421 * 108.70178 * 358.93715 * 5 4 2 20 20 C 1.54904 * 104.83620 * 24.13268 * 19 5 4 21 21 H 1.08995 * 111.00703 * 204.91484 * 20 19 5 22 22 N 1.46498 * 111.00757 * 81.05810 * 20 19 5 23 23 C 1.36946 * 119.99888 * 92.80841 * 22 20 19 24 24 H 1.08000 * 119.99550 * 359.97438 * 23 22 20 25 25 C 1.38804 * 119.99745 * 180.02562 * 23 22 20 26 26 N 1.31618 * 120.00717 * 359.97438 * 25 23 22 27 27 Si 1.86806 * 119.99700 * 179.97438 * 25 23 22 28 28 H 1.48492 * 109.47247 * 59.99712 * 27 25 23 29 29 H 1.48503 * 109.47032 * 179.97438 * 27 25 23 30 30 H 1.48506 * 109.46910 * 299.99532 * 27 25 23 31 31 H 1.09002 * 109.47153 * 181.69040 * 1 2 3 32 32 H 1.09001 * 109.46832 * 61.69231 * 1 2 3 33 33 H 1.09004 * 109.47261 * 301.69213 * 1 2 3 34 34 H 1.08999 * 109.87685 * 338.86158 * 4 2 1 35 35 H 1.08998 * 109.88102 * 99.87410 * 4 2 1 36 36 H 1.08005 * 127.22085 * 359.96207 * 9 8 6 37 37 H 1.08000 * 126.43765 * 180.17612 * 10 9 8 38 38 H 1.08007 * 120.03241 * 359.97438 * 13 12 11 39 39 H 1.07999 * 119.96654 * 180.29231 * 14 13 12 40 40 H 1.07996 * 119.92972 * 179.72120 * 15 14 13 41 41 H 1.08000 * 119.96146 * 180.02562 * 16 15 14 42 42 H 1.08004 * 120.03207 * 180.02562 * 17 16 15 43 43 H 1.09007 * 110.36440 * 142.96663 * 19 5 4 44 44 H 1.08996 * 110.37385 * 265.17849 * 19 5 4 45 45 H 0.96995 * 120.00220 * 272.80757 * 22 20 19 46 46 H 0.96996 * 120.00457 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9142 1.0200 0.0000 4 6 2.0761 -0.7892 -1.2086 5 7 3.2446 -1.5495 -0.7415 6 6 3.9923 -2.3811 -1.4936 7 8 3.7191 -2.5518 -2.6659 8 6 5.1442 -3.0842 -0.8939 9 6 6.0133 -3.9870 -1.5517 10 6 6.9115 -4.3734 -0.6157 11 7 6.5836 -3.7381 0.5396 12 6 7.2693 -3.8754 1.7538 13 6 8.3710 -4.7162 1.8395 14 6 9.0480 -4.8452 3.0364 15 6 8.6227 -4.1471 4.1517 16 6 7.5227 -3.3129 4.0709 17 6 6.8450 -3.1752 2.8753 18 7 5.5530 -2.9932 0.3563 19 6 3.4633 -1.2508 0.6855 20 6 2.0790 -0.7974 1.2125 21 1 2.1850 -0.1552 2.0868 22 7 1.2271 -1.9512 1.5112 23 6 1.2021 -2.4745 2.7765 24 1 1.8107 -2.0368 3.5540 25 6 0.3954 -3.5681 3.0594 26 7 -0.3459 -4.1018 2.1118 27 14 0.3617 -4.2823 4.7852 28 1 -0.0945 -3.2428 5.7424 29 1 -0.5727 -5.4358 4.8254 30 1 1.7253 -4.7360 5.1598 31 1 -0.3633 -1.0272 0.0303 32 1 -0.3633 0.4873 -0.9048 33 1 -0.3634 0.5399 0.8744 34 1 1.3130 -1.4732 -1.5799 35 1 2.3716 -0.0992 -1.9989 36 1 5.9702 -4.3004 -2.5844 37 1 7.7320 -5.0608 -0.7591 38 1 8.7004 -5.2658 0.9700 39 1 9.9078 -5.4954 3.1024 40 1 9.1510 -4.2531 5.0876 41 1 7.1933 -2.7686 4.9436 42 1 5.9863 -2.5232 2.8128 43 1 3.7960 -2.1446 1.2135 44 1 4.1946 -0.4504 0.7979 45 1 0.6809 -2.3445 0.8129 46 1 -0.9094 -4.8662 2.3094 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054853973.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:52 Heat of formation + Delta-G solvation = 105.178589 kcal Electronic energy + Delta-G solvation = -29666.446837 eV Core-core repulsion = 25751.814040 eV Total energy + Delta-G solvation = -3914.632797 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.84052 -39.61105 -39.11150 -37.37692 -33.86454 -33.66829 -32.33659 -31.63147 -30.52018 -30.38297 -29.41664 -27.68659 -26.35902 -24.22309 -23.72645 -23.42046 -22.19989 -21.17225 -20.85204 -19.20942 -19.12662 -18.29713 -17.46811 -16.54664 -16.44038 -16.18438 -15.65342 -15.19167 -15.08484 -14.66168 -14.42510 -14.05987 -13.83878 -13.66000 -13.59239 -13.12819 -13.01307 -12.96516 -12.85555 -12.47933 -12.06409 -11.92276 -11.86299 -11.57070 -11.37488 -11.07991 -10.89983 -10.79239 -10.61226 -10.32406 -10.23579 -10.18522 -9.92299 -9.75613 -9.59622 -9.30321 -9.23189 -8.97639 -8.38673 -8.09614 -6.97408 -5.78321 -3.07411 0.60526 1.05542 1.95592 2.23695 2.34009 3.40528 3.41364 3.45612 3.47229 3.51921 3.75359 4.25701 4.50175 4.56146 4.64795 4.71811 4.85517 4.94822 5.07168 5.19235 5.25727 5.27317 5.40213 5.45810 5.61563 5.63204 5.70034 5.71590 5.74866 5.87531 6.00321 6.00446 6.05885 6.09059 6.20489 6.29797 6.31506 6.37470 6.43070 6.46619 6.48212 6.67588 6.71737 6.86166 7.00221 7.04294 7.67077 7.87153 7.99623 8.39424 8.55491 9.50987 10.07275 10.42074 11.43855 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.008043 B = 0.004630 C = 0.003356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3480.388120 B = 6046.542660 C = 8342.346058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.115 4.115 3 H 0.079 0.921 4 C 0.117 3.883 5 N -0.588 5.588 6 C 0.614 3.386 7 O -0.547 6.547 8 C 0.008 3.992 9 C -0.170 4.170 10 C -0.023 4.023 11 N -0.240 5.240 12 C 0.141 3.859 13 C -0.131 4.131 14 C -0.100 4.100 15 C -0.124 4.124 16 C -0.096 4.096 17 C -0.105 4.105 18 N -0.242 5.242 19 C 0.071 3.929 20 C 0.170 3.830 21 H 0.073 0.927 22 N -0.707 5.707 23 C -0.242 4.242 24 H 0.070 0.930 25 C -0.009 4.009 26 N -0.929 5.929 27 Si 0.904 3.096 28 H -0.285 1.285 29 H -0.292 1.292 30 H -0.287 1.287 31 H 0.072 0.928 32 H 0.043 0.957 33 H 0.057 0.943 34 H 0.069 0.931 35 H 0.060 0.940 36 H 0.167 0.833 37 H 0.183 0.817 38 H 0.132 0.868 39 H 0.132 0.868 40 H 0.129 0.871 41 H 0.135 0.865 42 H 0.145 0.855 43 H 0.097 0.903 44 H 0.052 0.948 45 H 0.387 0.613 46 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.495 3.003 -0.514 18.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.136 4.136 3 H 0.097 0.903 4 C -0.005 4.005 5 N -0.319 5.319 6 C 0.400 3.600 7 O -0.425 6.425 8 C -0.154 4.154 9 C -0.197 4.197 10 C -0.162 4.162 11 N -0.021 5.021 12 C 0.050 3.950 13 C -0.152 4.152 14 C -0.118 4.118 15 C -0.142 4.142 16 C -0.115 4.115 17 C -0.125 4.125 18 N -0.074 5.074 19 C -0.055 4.055 20 C 0.057 3.943 21 H 0.091 0.909 22 N -0.348 5.348 23 C -0.373 4.373 24 H 0.088 0.912 25 C -0.205 4.205 26 N -0.577 5.577 27 Si 0.735 3.265 28 H -0.212 1.212 29 H -0.218 1.218 30 H -0.214 1.214 31 H 0.091 0.909 32 H 0.062 0.938 33 H 0.077 0.923 34 H 0.087 0.913 35 H 0.079 0.921 36 H 0.184 0.816 37 H 0.200 0.800 38 H 0.150 0.850 39 H 0.150 0.850 40 H 0.147 0.853 41 H 0.153 0.847 42 H 0.163 0.837 43 H 0.116 0.884 44 H 0.071 0.929 45 H 0.222 0.778 46 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 18.141 3.310 0.053 18.441 hybrid contribution 0.053 -1.187 -0.016 1.188 sum 18.194 2.124 0.036 18.317 Atomic orbital electron populations 1.21610 0.93453 1.03431 1.00459 1.22549 0.97121 0.98493 0.95391 0.90314 1.21985 0.87540 0.94351 0.96662 1.48123 1.28798 1.42700 1.12257 1.16422 0.80482 0.78324 0.84763 1.90756 1.70951 1.65017 1.15729 1.22038 0.99940 1.02995 0.90436 1.21793 0.95839 1.00856 1.01223 1.22950 1.03965 1.03673 0.85578 1.42865 1.20132 1.31277 1.07850 1.17690 0.93842 1.00020 0.83456 1.20829 0.95154 0.99501 0.99679 1.20961 0.99619 0.99390 0.91866 1.21294 0.97138 0.96973 0.98834 1.21152 0.94934 0.98114 0.97273 1.21112 1.00802 0.99555 0.91005 1.73806 1.00609 1.14064 1.18937 1.23590 1.00212 1.01684 0.80023 1.21385 0.88710 0.89867 0.94295 0.90880 1.42350 1.49507 1.32640 1.10273 1.19165 1.20979 1.09790 0.87369 0.91160 1.24720 0.99582 0.98753 0.97447 1.69646 1.30735 1.25618 1.31673 0.86319 0.77217 0.78546 0.84389 1.21206 1.21753 1.21363 0.90937 0.93798 0.92347 0.91257 0.92134 0.81589 0.80021 0.85034 0.84969 0.85341 0.84706 0.83727 0.88449 0.92933 0.77791 0.93415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.15 8.80 37.16 0.33 -1.83 16 2 C -0.12 -1.87 3.42 -88.78 -0.30 -2.17 16 3 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 4 C 0.12 2.05 6.46 -3.06 -0.02 2.03 16 5 N -0.59 -11.27 3.33 -171.70 -0.57 -11.84 16 6 C 0.61 12.44 7.85 -12.41 -0.10 12.34 16 7 O -0.55 -12.07 17.25 5.30 0.09 -11.98 16 8 C 0.01 0.14 6.96 -82.75 -0.58 -0.44 16 9 C -0.17 -2.54 10.80 -39.35 -0.42 -2.97 16 10 C -0.02 -0.29 10.78 -16.80 -0.18 -0.47 16 11 N -0.24 -3.55 3.52 -10.55 -0.04 -3.59 16 12 C 0.14 1.81 6.66 -83.61 -0.56 1.25 16 13 C -0.13 -1.27 9.43 -39.40 -0.37 -1.64 16 14 C -0.10 -0.81 10.04 -39.61 -0.40 -1.20 16 15 C -0.12 -1.04 10.04 -39.55 -0.40 -1.44 16 16 C -0.10 -0.97 10.04 -39.61 -0.40 -1.37 16 17 C -0.11 -1.35 9.59 -39.40 -0.38 -1.72 16 18 N -0.24 -4.24 8.27 33.42 0.28 -3.96 16 19 C 0.07 1.31 5.84 -2.53 -0.01 1.30 16 20 C 0.17 3.25 3.47 -65.78 -0.23 3.03 16 21 H 0.07 1.34 8.09 -51.93 -0.42 0.92 16 22 N -0.71 -17.05 4.56 -51.35 -0.23 -17.28 16 23 C -0.24 -6.47 9.96 -15.06 -0.15 -6.62 16 24 H 0.07 1.80 7.83 -52.49 -0.41 1.39 16 25 C -0.01 -0.24 5.50 -17.43 -0.10 -0.34 16 26 N -0.93 -27.89 13.06 55.49 0.72 -27.17 16 27 Si 0.90 22.15 29.55 -169.99 -5.02 17.13 16 28 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 29 H -0.29 -7.28 7.11 56.52 0.40 -6.87 16 30 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 31 H 0.07 1.41 6.34 -51.93 -0.33 1.08 16 32 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 33 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 34 H 0.07 1.32 7.82 -51.93 -0.41 0.91 16 35 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 36 H 0.17 2.18 8.06 -52.48 -0.42 1.75 16 37 H 0.18 1.46 6.96 -52.49 -0.37 1.09 16 38 H 0.13 0.95 6.65 -52.48 -0.35 0.60 16 39 H 0.13 0.69 8.06 -52.49 -0.42 0.27 16 40 H 0.13 0.75 8.06 -52.49 -0.42 0.33 16 41 H 0.14 1.11 8.06 -52.49 -0.42 0.68 16 42 H 0.14 2.04 7.65 -52.48 -0.40 1.64 16 43 H 0.10 2.03 6.20 -51.93 -0.32 1.71 16 44 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 45 H 0.39 10.17 6.32 -40.82 -0.26 9.91 16 46 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 LS Contribution 381.61 15.07 5.75 5.75 Total: -1.00 -33.74 381.61 -9.49 -43.22 By element: Atomic # 1 Polarization: 18.19 SS G_CDS: -6.20 Total: 11.99 kcal Atomic # 6 Polarization: 2.00 SS G_CDS: -4.26 Total: -2.26 kcal Atomic # 7 Polarization: -64.00 SS G_CDS: 0.16 Total: -63.84 kcal Atomic # 8 Polarization: -12.07 SS G_CDS: 0.09 Total: -11.98 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.13 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -33.74 -9.49 -43.22 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054853973.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.403 kcal (2) G-P(sol) polarization free energy of solvation -33.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 114.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.224 kcal (6) G-S(sol) free energy of system = (1) + (5) 105.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds