Wall clock time and date at job start Sat Apr 11 2020 06:07:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 110.63765 * 2 1 4 4 C 1.54329 * 111.00660 * 236.92152 * 2 1 3 5 5 N 1.47022 * 107.26561 * 219.60155 * 4 2 1 6 6 C 1.34778 * 125.64883 * 178.85107 * 5 4 2 7 7 O 1.21599 * 120.00131 * 184.83718 * 6 5 4 8 8 C 1.47412 * 119.99847 * 4.83789 * 6 5 4 9 9 C 1.41333 * 126.40898 * 354.35085 * 8 6 5 10 10 N 1.30474 * 108.06623 * 180.02562 * 9 8 6 11 11 N 1.39935 * 108.91577 * 0.02562 * 10 9 8 12 12 C 1.40157 * 125.77187 * 179.97438 * 11 10 9 13 13 C 1.38852 * 120.06823 * 179.70519 * 12 11 10 14 14 C 1.38112 * 119.93220 * 179.70443 * 13 12 11 15 15 C 1.38287 * 120.06929 * 0.57200 * 14 13 12 16 16 C 1.38288 * 120.13131 * 359.72454 * 15 14 13 17 17 C 1.38115 * 120.06963 * 359.97438 * 16 15 14 18 18 C 1.34534 * 108.45916 * 359.97438 * 11 10 9 19 19 C 1.47426 * 108.70173 * 358.58360 * 5 4 2 20 20 C 1.54905 * 104.83243 * 24.35851 * 19 5 4 21 21 H 1.09001 * 111.00149 * 204.91905 * 20 19 5 22 22 N 1.46493 * 111.00602 * 81.10399 * 20 19 5 23 23 C 1.36934 * 120.00319 * 86.44991 * 22 20 19 24 24 H 1.08004 * 119.99826 * 0.02562 * 23 22 20 25 25 C 1.38817 * 120.00560 * 180.02562 * 23 22 20 26 26 N 1.31619 * 119.99269 * 0.02562 * 25 23 22 27 27 Si 1.86794 * 120.00327 * 180.02562 * 25 23 22 28 28 H 1.48505 * 109.47112 * 60.00042 * 27 25 23 29 29 H 1.48496 * 109.46943 * 179.97438 * 27 25 23 30 30 H 1.48502 * 109.47278 * 300.00371 * 27 25 23 31 31 H 1.08991 * 109.47514 * 296.85881 * 1 2 3 32 32 H 1.08996 * 109.47188 * 56.86579 * 1 2 3 33 33 H 1.09003 * 109.46720 * 176.85847 * 1 2 3 34 34 H 1.09004 * 109.99278 * 100.12381 * 4 2 1 35 35 H 1.09004 * 109.77823 * 338.95361 * 4 2 1 36 36 H 1.07995 * 125.97006 * 0.03105 * 9 8 6 37 37 H 1.07998 * 120.03201 * 0.02562 * 13 12 11 38 38 H 1.08000 * 119.96688 * 180.29487 * 14 13 12 39 39 H 1.07995 * 119.93422 * 179.70028 * 15 14 13 40 40 H 1.08003 * 119.96369 * 180.02562 * 16 15 14 41 41 H 1.07994 * 120.03836 * 180.02562 * 17 16 15 42 42 H 1.08002 * 126.31404 * 179.97438 * 18 11 10 43 43 H 1.09003 * 110.36694 * 143.20036 * 19 5 4 44 44 H 1.08998 * 110.36614 * 265.51908 * 19 5 4 45 45 H 0.97001 * 119.99902 * 266.45577 * 22 20 19 46 46 H 0.97002 * 119.99430 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9142 1.0201 0.0000 4 6 2.0833 -0.7863 -1.2072 5 7 3.2495 -1.5469 -0.7352 6 6 4.0007 -2.3784 -1.4842 7 8 4.8914 -3.0249 -0.9672 8 6 3.7424 -2.5039 -2.9300 9 6 2.6804 -1.9080 -3.6473 10 7 2.7934 -2.2548 -4.9001 11 7 3.9160 -3.0778 -5.0434 12 6 4.3645 -3.6505 -6.2415 13 6 5.5018 -4.4470 -6.2489 14 6 5.9378 -5.0149 -7.4299 15 6 5.2497 -4.7812 -8.6065 16 6 4.1202 -3.9833 -8.6034 17 6 3.6757 -3.4177 -7.4244 18 6 4.4921 -3.2265 -3.8367 19 6 3.4652 -1.2445 0.6915 20 6 2.0789 -0.7933 1.2152 21 1 2.1820 -0.1488 2.0882 22 7 1.2298 -1.9485 1.5161 23 6 1.3008 -2.5490 2.7447 24 1 1.9826 -2.1707 3.4921 25 6 0.4966 -3.6440 3.0297 26 7 -0.3338 -4.1053 2.1187 27 14 0.5930 -4.4627 4.7059 28 1 0.2426 -3.4764 5.7594 29 1 -0.3602 -5.6002 4.7567 30 1 1.9728 -4.9618 4.9345 31 1 -0.3634 0.4642 0.9167 32 1 -0.3633 0.5617 -0.8605 33 1 -0.3633 -1.0262 -0.0563 34 1 2.3849 -0.0960 -1.9950 35 1 1.3218 -1.4702 -1.5822 36 1 1.9100 -1.2758 -3.2313 37 1 6.0419 -4.6266 -5.3310 38 1 6.8196 -5.6385 -7.4355 39 1 5.5953 -5.2224 -9.5296 40 1 3.5847 -3.8030 -9.5238 41 1 2.7934 -2.7950 -7.4225 42 1 5.3774 -3.8050 -3.6175 43 1 3.7994 -2.1362 1.2220 44 1 4.1929 -0.4407 0.8031 45 1 0.6173 -2.2881 0.8450 46 1 -0.8955 -4.8707 2.3177 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054876064.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:07:03 Heat of formation + Delta-G solvation = 102.783774 kcal Electronic energy + Delta-G solvation = -28788.104570 eV Core-core repulsion = 24873.367927 eV Total energy + Delta-G solvation = -3914.736643 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.85086 -39.70440 -39.07144 -37.35739 -34.16732 -33.65573 -32.20671 -31.62359 -30.62937 -30.34884 -29.50938 -27.71291 -26.18043 -24.41462 -23.58961 -23.52396 -22.45304 -21.01828 -20.86273 -19.45824 -19.18845 -18.32946 -17.39164 -16.71483 -16.06973 -15.97634 -15.60370 -15.38999 -15.09250 -14.73126 -14.48481 -14.19341 -14.07961 -13.93908 -13.66847 -13.25540 -13.08091 -12.94215 -12.74943 -12.48830 -12.10362 -12.06357 -11.92566 -11.68729 -11.43228 -11.12987 -11.08628 -10.87633 -10.73177 -10.61684 -10.45874 -10.26830 -9.92124 -9.63050 -9.52954 -9.44785 -9.30630 -8.98094 -8.39775 -8.12772 -6.97481 -5.78117 -3.06946 0.44202 0.90647 1.75484 2.03249 2.14938 3.37936 3.39068 3.45096 3.50082 3.50551 3.67518 4.16237 4.40009 4.56307 4.56968 4.58264 4.73075 4.85319 4.91703 4.92577 4.99266 5.19752 5.21939 5.31625 5.32631 5.48248 5.55797 5.58769 5.69924 5.71652 5.80474 5.86981 5.91820 5.95834 6.05576 6.19108 6.23607 6.27699 6.32647 6.34890 6.37429 6.57256 6.75260 6.82266 6.82881 6.94371 7.33879 7.69688 7.97611 8.40133 8.59559 9.52041 10.06915 10.41413 11.44190 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.015803 B = 0.002505 C = 0.002380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1771.375250 B =11176.149607 C =11759.930460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.113 4.113 3 H 0.081 0.919 4 C 0.100 3.900 5 N -0.596 5.596 6 C 0.605 3.395 7 O -0.551 6.551 8 C -0.265 4.265 9 C 0.081 3.919 10 N -0.294 5.294 11 N -0.316 5.316 12 C 0.158 3.842 13 C -0.140 4.140 14 C -0.093 4.093 15 C -0.130 4.130 16 C -0.097 4.097 17 C -0.116 4.116 18 C 0.121 3.879 19 C 0.080 3.920 20 C 0.171 3.829 21 H 0.071 0.929 22 N -0.708 5.708 23 C -0.243 4.243 24 H 0.071 0.929 25 C -0.009 4.009 26 N -0.931 5.931 27 Si 0.907 3.093 28 H -0.286 1.286 29 H -0.292 1.292 30 H -0.286 1.286 31 H 0.061 0.939 32 H 0.045 0.955 33 H 0.069 0.931 34 H 0.064 0.936 35 H 0.071 0.929 36 H 0.207 0.793 37 H 0.133 0.867 38 H 0.134 0.866 39 H 0.128 0.872 40 H 0.132 0.868 41 H 0.140 0.860 42 H 0.190 0.810 43 H 0.084 0.916 44 H 0.053 0.947 45 H 0.386 0.614 46 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.942 5.417 -21.050 23.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.133 4.133 3 H 0.100 0.900 4 C -0.023 4.023 5 N -0.328 5.328 6 C 0.394 3.606 7 O -0.431 6.431 8 C -0.278 4.278 9 C -0.107 4.107 10 N -0.111 5.111 11 N -0.089 5.089 12 C 0.066 3.934 13 C -0.160 4.160 14 C -0.111 4.111 15 C -0.148 4.148 16 C -0.116 4.116 17 C -0.136 4.136 18 C -0.026 4.026 19 C -0.046 4.046 20 C 0.058 3.942 21 H 0.089 0.911 22 N -0.349 5.349 23 C -0.374 4.374 24 H 0.089 0.911 25 C -0.206 4.206 26 N -0.578 5.578 27 Si 0.738 3.262 28 H -0.212 1.212 29 H -0.218 1.218 30 H -0.212 1.212 31 H 0.080 0.920 32 H 0.064 0.936 33 H 0.088 0.912 34 H 0.082 0.918 35 H 0.089 0.911 36 H 0.223 0.777 37 H 0.151 0.849 38 H 0.151 0.849 39 H 0.146 0.854 40 H 0.150 0.850 41 H 0.157 0.843 42 H 0.207 0.793 43 H 0.102 0.898 44 H 0.071 0.929 45 H 0.222 0.778 46 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 8.963 5.029 -21.846 24.143 hybrid contribution 0.156 -0.783 1.514 1.712 sum 9.118 4.246 -20.332 22.684 Atomic orbital electron populations 1.21618 0.93393 1.03019 1.01075 1.22500 0.97035 0.98655 0.95091 0.90048 1.22387 0.88138 0.94462 0.97301 1.48003 1.29225 1.43818 1.11756 1.16694 0.81237 0.78621 0.84012 1.90757 1.33476 1.45371 1.73458 1.20389 1.01707 1.10457 0.95294 1.24975 0.98015 0.97759 0.89919 1.77230 1.02859 1.11183 1.19831 1.45665 1.20910 1.36899 1.05381 1.17625 0.95416 0.96705 0.83644 1.20932 0.95923 0.99060 1.00123 1.20996 0.99816 0.98738 0.91576 1.21267 0.95937 0.99167 0.98475 1.21097 0.96394 0.96489 0.97577 1.20950 1.00817 1.01303 0.90549 1.22950 0.98531 0.97533 0.83597 1.23313 1.00349 1.00907 0.79993 1.21387 0.88737 0.89891 0.94171 0.91106 1.42337 1.45280 1.32288 1.15022 1.19175 1.18332 1.09144 0.90761 0.91087 1.24729 0.99077 0.98780 0.97968 1.69644 1.27506 1.27199 1.33494 0.86273 0.77243 0.78898 0.83794 1.21235 1.21768 1.21218 0.91991 0.93628 0.91207 0.91837 0.91107 0.77723 0.84914 0.84853 0.85368 0.84989 0.84262 0.79263 0.89799 0.92865 0.77834 0.93444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.93 8.73 37.16 0.32 -1.60 16 2 C -0.11 -1.62 3.40 -88.78 -0.30 -1.92 16 3 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 4 C 0.10 1.42 4.59 -3.06 -0.01 1.40 16 5 N -0.60 -10.46 3.33 -171.79 -0.57 -11.03 16 6 C 0.61 11.36 7.84 -12.52 -0.10 11.26 16 7 O -0.55 -12.14 17.13 5.28 0.09 -12.05 16 8 C -0.26 -4.15 6.09 -105.05 -0.64 -4.78 16 9 C 0.08 1.13 10.45 -16.95 -0.18 0.95 16 10 N -0.29 -4.15 11.77 30.87 0.36 -3.78 16 11 N -0.32 -4.20 3.77 -10.20 -0.04 -4.24 16 12 C 0.16 1.77 6.68 -83.60 -0.56 1.21 16 13 C -0.14 -1.26 9.45 -39.40 -0.37 -1.63 16 14 C -0.09 -0.66 10.04 -39.61 -0.40 -1.06 16 15 C -0.13 -0.86 10.04 -39.55 -0.40 -1.26 16 16 C -0.10 -0.72 10.04 -39.61 -0.40 -1.12 16 17 C -0.12 -1.15 9.65 -39.40 -0.38 -1.53 16 18 C 0.12 1.66 10.61 -16.43 -0.17 1.49 16 19 C 0.08 1.48 6.62 -2.53 -0.02 1.46 16 20 C 0.17 3.15 3.44 -65.79 -0.23 2.92 16 21 H 0.07 1.28 8.13 -51.93 -0.42 0.85 16 22 N -0.71 -16.79 4.74 -51.35 -0.24 -17.03 16 23 C -0.24 -6.56 9.98 -15.06 -0.15 -6.71 16 24 H 0.07 1.86 7.83 -52.48 -0.41 1.44 16 25 C -0.01 -0.26 5.50 -17.43 -0.10 -0.36 16 26 N -0.93 -27.78 13.06 55.49 0.72 -27.05 16 27 Si 0.91 22.43 29.55 -169.99 -5.02 17.41 16 28 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 29 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 30 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 31 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 32 H 0.04 0.53 8.14 -51.93 -0.42 0.10 16 33 H 0.07 1.21 6.38 -51.93 -0.33 0.88 16 34 H 0.06 0.72 6.89 -51.93 -0.36 0.36 16 35 H 0.07 1.03 6.60 -51.93 -0.34 0.68 16 36 H 0.21 2.36 4.51 -52.49 -0.24 2.13 16 37 H 0.13 1.02 6.71 -52.49 -0.35 0.67 16 38 H 0.13 0.62 8.06 -52.49 -0.42 0.20 16 39 H 0.13 0.53 8.06 -52.49 -0.42 0.11 16 40 H 0.13 0.67 8.06 -52.48 -0.42 0.24 16 41 H 0.14 1.40 7.68 -52.49 -0.40 1.00 16 42 H 0.19 2.16 7.01 -52.49 -0.37 1.80 16 43 H 0.08 1.86 7.99 -51.93 -0.41 1.45 16 44 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 45 H 0.39 9.76 6.09 -40.82 -0.25 9.51 16 46 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 LS Contribution 378.70 15.07 5.71 5.71 Total: -1.00 -34.29 378.70 -9.05 -43.34 By element: Atomic # 1 Polarization: 15.99 SS G_CDS: -5.98 Total: 10.01 kcal Atomic # 6 Polarization: 2.79 SS G_CDS: -4.07 Total: -1.28 kcal Atomic # 7 Polarization: -63.37 SS G_CDS: 0.23 Total: -63.13 kcal Atomic # 8 Polarization: -12.14 SS G_CDS: 0.09 Total: -12.05 kcal Atomic # 14 Polarization: 22.43 SS G_CDS: -5.02 Total: 17.41 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -34.29 -9.05 -43.34 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054876064.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.123 kcal (2) G-P(sol) polarization free energy of solvation -34.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 111.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.339 kcal (6) G-S(sol) free energy of system = (1) + (5) 102.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds