Wall clock time and date at job start Sat Apr 11 2020 06:07:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08999 * 110.78065 * 2 1 4 4 C 1.54324 * 110.71890 * 123.23829 * 2 1 3 5 5 N 1.47020 * 107.39983 * 140.47837 * 4 2 1 6 6 C 1.34780 * 125.64983 * 181.10309 * 5 4 2 7 7 O 1.21568 * 119.99588 * 359.97438 * 6 5 4 8 8 C 1.47736 * 120.00674 * 179.97438 * 6 5 4 9 9 C 1.41177 * 126.33862 * 179.97438 * 8 6 5 10 10 C 1.36681 * 105.44576 * 179.97438 * 9 8 6 11 11 C 1.48012 * 126.59205 * 180.02562 * 10 9 8 12 12 C 1.39486 * 120.13311 * 359.72790 * 11 10 9 13 13 C 1.37983 * 119.85859 * 179.74962 * 12 11 10 14 14 C 1.38347 * 120.13463 * 0.52191 * 13 12 11 15 15 C 1.38340 * 120.27809 * 359.75006 * 14 13 12 16 16 C 1.37984 * 120.13258 * 359.97438 * 15 14 13 17 17 N 1.36368 * 106.81164 * 0.02562 * 10 9 8 18 18 H 0.97002 * 125.00968 * 179.97438 * 17 10 9 19 19 N 1.28446 * 109.97577 * 359.74875 * 17 10 9 20 20 C 1.47743 * 108.53125 * 1.18235 * 5 4 2 21 21 C 1.54909 * 104.83995 * 335.74644 * 20 5 4 22 22 H 1.08989 * 111.04037 * 279.00643 * 21 20 5 23 23 N 1.46498 * 111.00162 * 155.16578 * 21 20 5 24 24 C 1.36942 * 120.00022 * 92.80865 * 23 21 20 25 25 H 1.08006 * 119.99757 * 0.02562 * 24 23 21 26 26 C 1.38810 * 120.00359 * 179.97438 * 24 23 21 27 27 N 1.31616 * 120.00164 * 0.02562 * 26 24 23 28 28 Si 1.86799 * 119.99855 * 179.97438 * 26 24 23 29 29 H 1.48497 * 109.47464 * 0.02562 * 28 26 24 30 30 H 1.48504 * 109.47060 * 120.00490 * 28 26 24 31 31 H 1.48500 * 109.47199 * 240.00019 * 28 26 24 32 32 H 1.08993 * 109.46725 * 298.21749 * 1 2 3 33 33 H 1.09002 * 109.46930 * 58.21578 * 1 2 3 34 34 H 1.08996 * 109.47021 * 178.21464 * 1 2 3 35 35 H 1.09002 * 109.88322 * 259.97367 * 4 2 1 36 36 H 1.09000 * 109.88025 * 20.98532 * 4 2 1 37 37 H 1.08003 * 127.27254 * 359.97438 * 9 8 6 38 38 H 1.07994 * 120.07145 * 359.97438 * 12 11 10 39 39 H 1.07998 * 119.93554 * 180.26840 * 13 12 11 40 40 H 1.07998 * 119.86079 * 179.72168 * 14 13 12 41 41 H 1.08001 * 119.93884 * 179.97438 * 15 14 13 42 42 H 1.08009 * 120.06823 * 180.02562 * 16 15 14 43 43 H 1.09003 * 110.29227 * 216.94505 * 20 5 4 44 44 H 1.08996 * 110.53057 * 94.67717 * 20 5 4 45 45 H 0.96998 * 120.00750 * 272.81024 * 23 21 20 46 46 H 0.96996 * 120.00537 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9168 1.0191 0.0000 4 6 2.0760 -0.7912 1.2073 5 7 3.2438 -1.5534 0.7416 6 6 3.9886 -2.3873 1.4943 7 8 3.7129 -2.5584 2.6659 8 6 5.1400 -3.0934 0.8957 9 6 6.0061 -3.9915 1.5563 10 6 6.9091 -4.3887 0.6103 11 6 8.0312 -5.3344 0.8037 12 6 8.2518 -5.9130 2.0536 13 6 9.2964 -6.7978 2.2262 14 6 10.1306 -7.1031 1.1656 15 6 9.9204 -6.5282 -0.0750 16 6 8.8757 -5.6462 -0.2617 17 7 6.5775 -3.7462 -0.5459 18 1 7.0491 -3.8380 -1.3886 19 7 5.5457 -3.0052 -0.3557 20 6 3.4633 -1.2498 -0.6875 21 6 2.0790 -0.7955 -1.2138 22 1 1.4449 -1.6532 -1.4379 23 7 2.2215 0.0696 -2.3874 24 6 2.1868 -0.4714 -3.6450 25 1 2.0539 -1.5357 -3.7715 26 6 2.3213 0.3483 -4.7571 27 7 2.4828 1.6454 -4.6030 28 14 2.2747 -0.3897 -6.4725 29 1 2.0849 -1.8592 -6.3742 30 1 1.1484 0.2044 -7.2366 31 1 3.5532 -0.1009 -7.1706 32 1 -0.3632 0.4859 0.9055 33 1 -0.3633 0.5413 -0.8736 34 1 -0.3633 -1.0271 -0.0320 35 1 2.3741 -0.1024 1.9978 36 1 1.3120 -1.4738 1.5792 37 1 5.9640 -4.2994 2.5906 38 1 7.6042 -5.6717 2.8835 39 1 9.4657 -7.2499 3.1923 40 1 10.9495 -7.7928 1.3068 41 1 10.5752 -6.7701 -0.8991 42 1 8.7123 -5.1983 -1.2309 43 1 3.7960 -2.1426 -1.2169 44 1 4.1936 -0.4486 -0.8002 45 1 2.3405 1.0255 -2.2739 46 1 2.5771 2.2182 -5.3801 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054877989.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:07:13 Heat of formation + Delta-G solvation = 81.420685 kcal Electronic energy + Delta-G solvation = -28414.174783 eV Core-core repulsion = 24498.511766 eV Total energy + Delta-G solvation = -3915.663017 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.69059 -39.59394 -39.23226 -37.41102 -34.05652 -33.12524 -32.50666 -31.96907 -31.13832 -30.66022 -29.12268 -27.47982 -26.51589 -24.19991 -23.64769 -23.45853 -22.59646 -21.19174 -21.01953 -19.83206 -19.01507 -18.42037 -17.18174 -16.98150 -16.47974 -16.04964 -15.59630 -15.36810 -15.23353 -14.99074 -14.43149 -14.01654 -13.95824 -13.62415 -13.57020 -13.43146 -13.20873 -13.05396 -12.90516 -12.67174 -12.58185 -11.92677 -11.75563 -11.56070 -11.44440 -11.12963 -11.01808 -10.87551 -10.58267 -10.55807 -10.26274 -10.17311 -9.98210 -9.87795 -9.71005 -9.46835 -9.37421 -8.98374 -8.43291 -8.26685 -7.05188 -5.83577 -3.13369 0.52233 0.98844 1.67267 2.19518 2.62928 3.24185 3.38714 3.45124 3.46924 3.47546 3.58189 4.14738 4.34077 4.46908 4.53822 4.54437 4.71956 4.87457 4.99497 5.04810 5.21844 5.22435 5.28825 5.30912 5.52558 5.54683 5.59155 5.62710 5.70879 5.85604 5.92582 5.98205 6.00608 6.09035 6.09986 6.11197 6.19504 6.29295 6.32564 6.51240 6.52218 6.59608 6.61870 6.66720 6.88931 6.94089 7.65677 7.72038 7.84766 8.33667 8.39553 9.46073 10.00557 10.35834 11.38611 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.010931 B = 0.002791 C = 0.002267 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2560.861013 B =10028.818346 C =12346.789839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.116 4.116 3 H 0.084 0.916 4 C 0.117 3.883 5 N -0.600 5.600 6 C 0.612 3.388 7 O -0.548 6.548 8 C -0.006 4.006 9 C -0.155 4.155 10 C 0.044 3.956 11 C -0.015 4.015 12 C -0.097 4.097 13 C -0.113 4.113 14 C -0.118 4.118 15 C -0.113 4.113 16 C -0.117 4.117 17 N -0.378 5.378 18 H 0.445 0.555 19 N -0.227 5.227 20 C 0.076 3.924 21 C 0.175 3.825 22 H 0.067 0.933 23 N -0.709 5.709 24 C -0.242 4.242 25 H 0.072 0.928 26 C -0.010 4.010 27 N -0.930 5.930 28 Si 0.906 3.094 29 H -0.280 1.280 30 H -0.291 1.291 31 H -0.292 1.292 32 H 0.048 0.952 33 H 0.067 0.933 34 H 0.052 0.948 35 H 0.063 0.937 36 H 0.067 0.933 37 H 0.165 0.835 38 H 0.131 0.869 39 H 0.128 0.872 40 H 0.124 0.876 41 H 0.126 0.874 42 H 0.119 0.881 43 H 0.087 0.913 44 H 0.068 0.932 45 H 0.387 0.613 46 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.296 -14.792 12.561 22.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.136 4.136 3 H 0.102 0.898 4 C -0.006 4.006 5 N -0.332 5.332 6 C 0.398 3.602 7 O -0.425 6.425 8 C -0.165 4.165 9 C -0.183 4.183 10 C -0.080 4.080 11 C -0.017 4.017 12 C -0.116 4.116 13 C -0.131 4.131 14 C -0.137 4.137 15 C -0.131 4.131 16 C -0.136 4.136 17 N -0.094 5.094 18 H 0.291 0.709 19 N -0.063 5.063 20 C -0.050 4.050 21 C 0.063 3.937 22 H 0.085 0.915 23 N -0.348 5.348 24 C -0.373 4.373 25 H 0.090 0.910 26 C -0.206 4.206 27 N -0.578 5.578 28 Si 0.737 3.263 29 H -0.205 1.205 30 H -0.218 1.218 31 H -0.219 1.219 32 H 0.067 0.933 33 H 0.086 0.914 34 H 0.071 0.929 35 H 0.082 0.918 36 H 0.086 0.914 37 H 0.182 0.818 38 H 0.149 0.851 39 H 0.146 0.854 40 H 0.142 0.858 41 H 0.144 0.856 42 H 0.137 0.863 43 H 0.105 0.895 44 H 0.086 0.914 45 H 0.221 0.779 46 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 11.847 -14.449 12.058 22.238 hybrid contribution 0.684 -0.407 -0.844 1.161 sum 12.531 -14.856 11.214 22.439 Atomic orbital electron populations 1.21649 0.93936 1.01738 1.01717 1.22544 0.96460 0.99836 0.94725 0.89771 1.22009 0.87230 0.94325 0.97011 1.48409 1.29203 1.42575 1.12976 1.16503 0.80450 0.78497 0.84733 1.90757 1.70693 1.65420 1.15616 1.21798 1.00501 1.03551 0.90680 1.21649 0.95487 1.00629 1.00561 1.19872 0.99418 1.00941 0.87730 1.17929 0.93121 0.95984 0.94649 1.21180 0.97956 0.96354 0.96087 1.21126 0.94958 0.97733 0.99289 1.21273 0.99510 0.99839 0.93066 1.21057 0.97525 0.96833 0.97651 1.21108 0.95563 0.98946 0.97975 1.43701 1.21970 1.32122 1.11573 0.70930 1.73861 1.00639 1.12880 1.18921 1.23717 1.01571 1.01768 0.77910 1.21413 0.92104 0.93576 0.86616 0.91459 1.42285 1.86179 1.06237 1.00140 1.19289 1.42197 0.92663 0.83128 0.91000 1.24744 1.02561 0.95441 0.97883 1.69665 1.56332 1.02698 1.29087 0.86135 0.77191 0.78148 0.84800 1.20522 1.21830 1.21879 0.93255 0.91414 0.92877 0.91819 0.91443 0.81786 0.85064 0.85404 0.85782 0.85581 0.86261 0.89503 0.91374 0.77899 0.93467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.94 9.13 37.16 0.34 -1.60 16 2 C -0.12 -1.88 3.20 -88.78 -0.28 -2.16 16 3 H 0.08 1.40 8.00 -51.93 -0.42 0.98 16 4 C 0.12 1.84 6.46 -3.06 -0.02 1.82 16 5 N -0.60 -10.42 3.34 -171.41 -0.57 -11.00 16 6 C 0.61 10.94 7.86 -12.38 -0.10 10.85 16 7 O -0.55 -10.71 17.24 5.31 0.09 -10.62 16 8 C -0.01 -0.09 6.95 -82.86 -0.58 -0.66 16 9 C -0.16 -2.07 10.16 -39.03 -0.40 -2.46 16 10 C 0.04 0.51 6.98 -82.41 -0.58 -0.07 16 11 C -0.02 -0.14 5.87 -104.96 -0.62 -0.76 16 12 C -0.10 -0.80 9.58 -39.21 -0.38 -1.18 16 13 C -0.11 -0.77 10.03 -39.63 -0.40 -1.17 16 14 C -0.12 -0.77 10.04 -39.50 -0.40 -1.16 16 15 C -0.11 -0.77 10.03 -39.64 -0.40 -1.17 16 16 C -0.12 -0.93 9.71 -39.21 -0.38 -1.31 16 17 N -0.38 -4.47 6.80 33.31 0.23 -4.24 16 18 H 0.45 3.83 8.08 -190.45 -1.54 2.29 16 19 N -0.23 -3.47 9.32 33.37 0.31 -3.16 16 20 C 0.08 1.40 5.87 -2.35 -0.01 1.39 16 21 C 0.18 3.39 3.16 -65.78 -0.21 3.19 16 22 H 0.07 1.34 7.98 -51.94 -0.41 0.93 16 23 N -0.71 -16.84 5.24 -51.35 -0.27 -17.11 16 24 C -0.24 -6.41 9.96 -15.06 -0.15 -6.56 16 25 H 0.07 1.87 7.83 -52.48 -0.41 1.46 16 26 C -0.01 -0.28 5.50 -17.43 -0.10 -0.37 16 27 N -0.93 -27.16 13.06 55.49 0.72 -26.43 16 28 Si 0.91 21.75 29.55 -169.99 -5.02 16.73 16 29 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 30 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 31 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 32 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 34 H 0.05 0.74 8.13 -51.93 -0.42 0.32 16 35 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 36 H 0.07 1.02 7.82 -51.93 -0.41 0.61 16 37 H 0.16 1.90 7.39 -52.48 -0.39 1.51 16 38 H 0.13 0.95 7.09 -52.49 -0.37 0.58 16 39 H 0.13 0.60 8.06 -52.49 -0.42 0.17 16 40 H 0.12 0.53 8.06 -52.49 -0.42 0.11 16 41 H 0.13 0.60 8.06 -52.49 -0.42 0.18 16 42 H 0.12 0.73 7.20 -52.48 -0.38 0.36 16 43 H 0.09 1.66 6.20 -51.93 -0.32 1.34 16 44 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 45 H 0.39 9.79 7.76 -40.82 -0.32 9.48 16 46 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 LS Contribution 384.90 15.07 5.80 5.80 Total: -1.00 -32.49 384.90 -10.83 -43.32 By element: Atomic # 1 Polarization: 17.58 SS G_CDS: -7.48 Total: 10.10 kcal Atomic # 6 Polarization: 1.25 SS G_CDS: -4.64 Total: -3.39 kcal Atomic # 7 Polarization: -62.36 SS G_CDS: 0.42 Total: -61.94 kcal Atomic # 8 Polarization: -10.71 SS G_CDS: 0.09 Total: -10.62 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -32.49 -10.83 -43.32 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054877989.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.743 kcal (2) G-P(sol) polarization free energy of solvation -32.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.323 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds