Wall clock time and date at job start Sat Apr 11 2020 06:07:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08993 * 110.78356 * 2 1 4 4 C 1.54327 * 110.72042 * 236.75772 * 2 1 3 5 5 N 1.47022 * 107.27336 * 219.44597 * 4 2 1 6 6 C 1.34776 * 125.64758 * 178.97550 * 5 4 2 7 7 O 1.21572 * 119.99785 * 0.02562 * 6 5 4 8 8 C 1.47738 * 120.00120 * 180.02562 * 6 5 4 9 9 C 1.41170 * 126.33343 * 179.71403 * 8 6 5 10 10 C 1.36686 * 105.44737 * 179.88022 * 9 8 6 11 11 C 1.48008 * 126.59764 * 180.10397 * 10 9 8 12 12 C 1.39491 * 120.13419 * 0.02726 * 11 10 9 13 13 C 1.37985 * 119.85652 * 179.73942 * 12 11 10 14 14 C 1.38337 * 120.13980 * 0.51244 * 13 12 11 15 15 C 1.38350 * 120.27306 * 359.75862 * 14 13 12 16 16 C 1.37976 * 120.13776 * 359.97438 * 15 14 13 17 17 N 1.36364 * 106.80683 * 0.38031 * 10 9 8 18 18 H 0.97000 * 125.01642 * 179.73118 * 17 10 9 19 19 N 1.28457 * 109.98037 * 359.74468 * 17 10 9 20 20 C 1.47425 * 108.70334 * 358.94217 * 5 4 2 21 21 C 1.54915 * 104.83334 * 24.12789 * 20 5 4 22 22 H 1.09001 * 111.00387 * 81.05917 * 21 20 5 23 23 N 1.46496 * 111.00547 * 204.91767 * 21 20 5 24 24 C 1.36935 * 120.00087 * 267.19884 * 23 21 20 25 25 H 1.08005 * 119.99923 * 359.97438 * 24 23 21 26 26 C 1.38812 * 120.00226 * 180.02562 * 24 23 21 27 27 N 1.31619 * 119.99905 * 359.97438 * 26 24 23 28 28 Si 1.86796 * 120.00010 * 179.97438 * 26 24 23 29 29 H 1.48495 * 109.47513 * 59.99736 * 28 26 24 30 30 H 1.48504 * 109.47178 * 179.97438 * 28 26 24 31 31 H 1.48509 * 109.47158 * 299.99597 * 28 26 24 32 32 H 1.08999 * 109.47239 * 181.78845 * 1 2 3 33 33 H 1.09007 * 109.46791 * 301.78830 * 1 2 3 34 34 H 1.08997 * 109.47298 * 61.78039 * 1 2 3 35 35 H 1.08997 * 109.87800 * 338.86780 * 4 2 1 36 36 H 1.09000 * 109.87987 * 99.87020 * 4 2 1 37 37 H 1.07996 * 127.27976 * 0.02562 * 9 8 6 38 38 H 1.07998 * 120.06991 * 359.97101 * 12 11 10 39 39 H 1.07996 * 119.92893 * 180.27298 * 13 12 11 40 40 H 1.08000 * 119.86634 * 179.74568 * 14 13 12 41 41 H 1.07999 * 119.92587 * 180.02562 * 15 14 13 42 42 H 1.08004 * 120.06928 * 179.97438 * 16 15 14 43 43 H 1.08997 * 110.36855 * 142.96531 * 20 5 4 44 44 H 1.08999 * 110.36490 * 265.17846 * 20 5 4 45 45 H 0.97002 * 120.00223 * 87.19063 * 23 21 20 46 46 H 0.97000 * 119.99990 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9167 1.0190 0.0000 4 6 2.0760 -0.7913 -1.2072 5 7 3.2445 -1.5508 -0.7390 6 6 3.9922 -2.3838 -1.4897 7 8 3.7189 -2.5563 -2.6617 8 6 5.1439 -3.0871 -0.8884 9 6 6.0093 -3.9885 -1.5453 10 6 6.9151 -4.3788 -0.5990 11 6 8.0392 -5.3225 -0.7896 12 6 8.2560 -5.9109 -2.0356 13 6 9.3090 -6.7858 -2.2083 14 6 10.1423 -7.0879 -1.1462 15 6 9.9290 -6.5120 0.0935 16 6 8.8829 -5.6314 0.2775 17 7 6.5801 -3.7361 0.5561 18 1 7.0501 -3.8266 1.3999 19 7 5.5502 -2.9932 0.3624 20 6 3.4632 -1.2499 0.6876 21 6 2.0789 -0.7955 1.2139 22 1 1.4450 -1.6536 1.4375 23 7 2.2214 0.0696 2.3875 24 6 2.1867 -0.4713 3.6450 25 1 2.0539 -1.5357 3.7716 26 6 2.3212 0.3484 4.7572 27 7 2.4826 1.6455 4.6030 28 14 2.2732 -0.3895 6.4726 29 1 3.3740 -1.3754 6.6184 30 1 2.4386 0.6889 7.4801 31 1 0.9694 -1.0685 6.6831 32 1 -0.3634 -1.0271 0.0321 33 1 -0.3633 0.5414 0.8736 34 1 -0.3634 0.4859 -0.9055 35 1 1.3129 -1.4758 -1.5775 36 1 2.3715 -0.1026 -1.9988 37 1 5.9663 -4.3017 -2.5780 38 1 7.6034 -5.6792 -2.8643 39 1 9.4806 -7.2385 -3.1736 40 1 10.9626 -7.7765 -1.2853 41 1 10.5833 -6.7515 0.9186 42 1 8.7171 -5.1827 1.2458 43 1 3.7959 -2.1427 1.2170 44 1 4.1946 -0.4493 0.7985 45 1 2.3404 1.0255 2.2739 46 1 2.5770 2.2183 5.3801 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054877990.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:07:16 Heat of formation + Delta-G solvation = 81.562834 kcal Electronic energy + Delta-G solvation = -28419.784037 eV Core-core repulsion = 24504.127184 eV Total energy + Delta-G solvation = -3915.656852 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.68905 -39.60506 -39.23334 -37.41158 -34.05710 -33.12571 -32.50976 -31.96924 -31.13709 -30.65783 -29.12155 -27.47438 -26.51980 -24.19792 -23.64400 -23.45667 -22.59406 -21.18708 -21.01827 -19.83399 -19.01635 -18.41620 -17.17798 -16.98257 -16.47777 -16.05404 -15.59191 -15.36714 -15.23377 -14.98843 -14.43258 -14.01637 -13.96413 -13.62261 -13.55880 -13.42783 -13.20743 -13.04980 -12.90900 -12.66578 -12.58481 -11.92963 -11.75581 -11.56049 -11.44313 -11.12173 -11.00695 -10.85940 -10.59206 -10.54788 -10.27106 -10.21449 -9.98125 -9.88047 -9.70170 -9.46698 -9.37327 -8.97009 -8.43116 -8.26250 -7.04963 -5.82947 -3.12797 0.52336 0.98971 1.67405 2.19638 2.63145 3.24708 3.39829 3.44915 3.45521 3.47633 3.58223 4.15045 4.34259 4.47216 4.53950 4.54769 4.72058 4.87900 4.99683 5.04918 5.22025 5.22592 5.29006 5.31070 5.52697 5.54826 5.59399 5.62839 5.71090 5.85610 5.92722 5.98310 6.00720 6.09320 6.10102 6.11329 6.19699 6.29469 6.32781 6.51382 6.52374 6.60153 6.62275 6.67005 6.89231 6.94309 7.64984 7.72192 7.85135 8.34268 8.39673 9.46513 10.01023 10.36367 11.39106 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.010918 B = 0.002796 C = 0.002270 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2563.910428 B =10012.444605 C =12333.127814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.116 4.116 3 H 0.084 0.916 4 C 0.117 3.883 5 N -0.599 5.599 6 C 0.611 3.389 7 O -0.548 6.548 8 C -0.006 4.006 9 C -0.156 4.156 10 C 0.044 3.956 11 C -0.015 4.015 12 C -0.097 4.097 13 C -0.113 4.113 14 C -0.118 4.118 15 C -0.113 4.113 16 C -0.117 4.117 17 N -0.378 5.378 18 H 0.445 0.555 19 N -0.227 5.227 20 C 0.075 3.925 21 C 0.176 3.824 22 H 0.067 0.933 23 N -0.709 5.709 24 C -0.243 4.243 25 H 0.071 0.929 26 C -0.009 4.009 27 N -0.931 5.931 28 Si 0.907 3.093 29 H -0.286 1.286 30 H -0.291 1.291 31 H -0.285 1.285 32 H 0.052 0.948 33 H 0.067 0.933 34 H 0.048 0.952 35 H 0.067 0.933 36 H 0.064 0.936 37 H 0.165 0.835 38 H 0.131 0.869 39 H 0.128 0.872 40 H 0.124 0.876 41 H 0.126 0.874 42 H 0.119 0.881 43 H 0.087 0.913 44 H 0.067 0.933 45 H 0.387 0.613 46 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.298 -14.726 -12.488 22.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.136 4.136 3 H 0.102 0.898 4 C -0.006 4.006 5 N -0.331 5.331 6 C 0.398 3.602 7 O -0.425 6.425 8 C -0.165 4.165 9 C -0.183 4.183 10 C -0.080 4.080 11 C -0.017 4.017 12 C -0.116 4.116 13 C -0.131 4.131 14 C -0.137 4.137 15 C -0.131 4.131 16 C -0.136 4.136 17 N -0.094 5.094 18 H 0.291 0.709 19 N -0.063 5.063 20 C -0.050 4.050 21 C 0.063 3.937 22 H 0.085 0.915 23 N -0.348 5.348 24 C -0.374 4.374 25 H 0.089 0.911 26 C -0.206 4.206 27 N -0.578 5.578 28 Si 0.738 3.262 29 H -0.213 1.213 30 H -0.217 1.217 31 H -0.212 1.212 32 H 0.071 0.929 33 H 0.086 0.914 34 H 0.067 0.933 35 H 0.086 0.914 36 H 0.082 0.918 37 H 0.182 0.818 38 H 0.149 0.851 39 H 0.146 0.854 40 H 0.142 0.858 41 H 0.144 0.856 42 H 0.137 0.863 43 H 0.105 0.895 44 H 0.086 0.914 45 H 0.221 0.779 46 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 11.850 -14.363 -11.980 22.141 hybrid contribution 0.683 -0.435 0.843 1.168 sum 12.532 -14.797 -11.137 22.362 Atomic orbital electron populations 1.21648 0.93938 1.01736 1.01716 1.22544 0.96460 0.99845 0.94735 0.89774 1.22011 0.87177 0.94361 0.97008 1.48335 1.29138 1.42683 1.12926 1.16515 0.80458 0.78494 0.84758 1.90757 1.70813 1.65326 1.15587 1.21796 1.00502 1.03480 0.90761 1.21647 0.95392 1.00692 1.00597 1.19872 0.99312 1.01023 0.87748 1.17931 0.93124 0.95942 0.94684 1.21182 0.97904 0.96352 0.96138 1.21123 0.94878 0.97839 0.99266 1.21274 0.99556 0.99808 0.93051 1.21057 0.97504 0.96836 0.97670 1.21106 0.95594 0.98951 0.97938 1.43705 1.22040 1.32088 1.11537 0.70931 1.73872 1.00744 1.12817 1.18851 1.23666 1.01573 1.01783 0.77996 1.21416 0.92089 0.93568 0.86620 0.91475 1.42264 1.86198 1.06226 1.00114 1.19196 1.42471 0.92605 0.83160 0.91113 1.24741 1.02518 0.95438 0.97868 1.69648 1.56162 1.02683 1.29326 0.86276 0.77860 0.77736 0.84328 1.21283 1.21700 1.21201 0.92879 0.91416 0.93256 0.91441 0.91786 0.81788 0.85062 0.85406 0.85780 0.85583 0.86261 0.89502 0.91419 0.77894 0.93363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.94 9.13 37.16 0.34 -1.60 16 2 C -0.12 -1.88 3.20 -88.78 -0.28 -2.17 16 3 H 0.08 1.40 8.00 -51.93 -0.42 0.98 16 4 C 0.12 1.84 6.46 -3.06 -0.02 1.82 16 5 N -0.60 -10.42 3.33 -171.67 -0.57 -10.99 16 6 C 0.61 10.95 7.86 -12.38 -0.10 10.85 16 7 O -0.55 -10.72 17.24 5.30 0.09 -10.63 16 8 C -0.01 -0.09 6.95 -82.87 -0.58 -0.67 16 9 C -0.16 -2.07 10.16 -39.03 -0.40 -2.47 16 10 C 0.04 0.51 6.98 -82.41 -0.58 -0.07 16 11 C -0.02 -0.14 5.87 -104.96 -0.62 -0.76 16 12 C -0.10 -0.80 9.58 -39.21 -0.38 -1.18 16 13 C -0.11 -0.78 10.03 -39.64 -0.40 -1.17 16 14 C -0.12 -0.77 10.04 -39.50 -0.40 -1.16 16 15 C -0.11 -0.77 10.03 -39.64 -0.40 -1.17 16 16 C -0.12 -0.93 9.71 -39.21 -0.38 -1.31 16 17 N -0.38 -4.49 6.80 33.31 0.23 -4.26 16 18 H 0.45 3.86 8.08 -190.45 -1.54 2.32 16 19 N -0.23 -3.48 9.30 33.37 0.31 -3.17 16 20 C 0.08 1.40 5.84 -2.53 -0.01 1.38 16 21 C 0.18 3.40 3.16 -65.78 -0.21 3.19 16 22 H 0.07 1.34 7.99 -51.93 -0.41 0.93 16 23 N -0.71 -16.86 5.24 -51.34 -0.27 -17.13 16 24 C -0.24 -6.46 9.96 -15.06 -0.15 -6.61 16 25 H 0.07 1.83 7.83 -52.48 -0.41 1.42 16 26 C -0.01 -0.26 5.50 -17.43 -0.10 -0.35 16 27 N -0.93 -27.18 13.06 55.49 0.72 -26.45 16 28 Si 0.91 21.77 29.55 -169.99 -5.02 16.74 16 29 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 30 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 31 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 32 H 0.05 0.74 8.13 -51.93 -0.42 0.32 16 33 H 0.07 1.09 8.14 -51.92 -0.42 0.67 16 34 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.07 1.02 7.82 -51.93 -0.41 0.61 16 36 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 37 H 0.16 1.91 7.39 -52.49 -0.39 1.52 16 38 H 0.13 0.95 7.10 -52.49 -0.37 0.58 16 39 H 0.13 0.60 8.06 -52.49 -0.42 0.18 16 40 H 0.12 0.53 8.06 -52.49 -0.42 0.11 16 41 H 0.13 0.61 8.06 -52.49 -0.42 0.18 16 42 H 0.12 0.74 7.20 -52.48 -0.38 0.36 16 43 H 0.09 1.66 6.19 -51.93 -0.32 1.34 16 44 H 0.07 1.35 8.14 -51.93 -0.42 0.92 16 45 H 0.39 9.81 7.76 -40.82 -0.32 9.49 16 46 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 LS Contribution 384.85 15.07 5.80 5.80 Total: -1.00 -32.45 384.85 -10.83 -43.28 By element: Atomic # 1 Polarization: 17.72 SS G_CDS: -7.48 Total: 10.24 kcal Atomic # 6 Polarization: 1.21 SS G_CDS: -4.64 Total: -3.43 kcal Atomic # 7 Polarization: -62.43 SS G_CDS: 0.42 Total: -62.01 kcal Atomic # 8 Polarization: -10.72 SS G_CDS: 0.09 Total: -10.63 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -32.45 -10.83 -43.28 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054877990.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.846 kcal (2) G-P(sol) polarization free energy of solvation -32.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.283 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds