Wall clock time and date at job start Sat Apr 11 2020 06:05:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09006 * 110.91491 * 2 1 4 4 C 1.54910 * 111.00400 * 123.90316 * 2 1 3 5 5 N 1.47429 * 104.92609 * 155.14118 * 4 2 1 6 6 C 1.34775 * 125.64810 * 155.79755 * 5 4 2 7 7 O 1.21584 * 119.99966 * 354.34169 * 6 5 4 8 8 C 1.47653 * 120.00100 * 174.34638 * 6 5 4 9 9 C 1.39711 * 120.07978 * 7.03909 * 8 6 5 10 10 C 1.37720 * 119.92249 * 179.77020 * 9 8 6 11 11 C 1.39046 * 120.07615 * 0.50987 * 10 9 8 12 12 N 1.39861 * 119.91930 * 179.72341 * 11 10 9 13 13 C 1.37157 * 126.48628 * 359.72906 * 12 11 10 14 14 C 1.34624 * 106.83141 * 179.88097 * 13 12 11 15 15 N 1.34154 * 108.21410 * 0.39111 * 14 13 12 16 16 C 1.30484 * 109.36675 * 359.75168 * 15 14 13 17 17 C 1.39046 * 120.16236 * 359.74375 * 11 10 9 18 18 C 1.37720 * 120.07701 * 0.02562 * 17 11 10 19 19 C 1.47018 * 108.70183 * 335.81639 * 5 4 2 20 20 C 1.54329 * 107.27444 * 1.06080 * 19 5 4 21 21 H 1.09001 * 110.72025 * 140.55561 * 20 19 5 22 22 N 1.46496 * 110.71911 * 263.83138 * 20 19 5 23 23 C 1.36939 * 119.99969 * 273.54531 * 22 20 19 24 24 H 1.08003 * 119.99756 * 359.97438 * 23 22 20 25 25 C 1.38812 * 120.00187 * 180.02562 * 23 22 20 26 26 N 1.31622 * 119.99784 * 359.97438 * 25 23 22 27 27 Si 1.86801 * 120.00034 * 179.97438 * 25 23 22 28 28 H 1.48504 * 109.46860 * 90.00151 * 27 25 23 29 29 H 1.48504 * 109.46930 * 209.99807 * 27 25 23 30 30 H 1.48495 * 109.47219 * 329.99965 * 27 25 23 31 31 H 1.08997 * 109.47112 * 297.55028 * 1 2 3 32 32 H 1.08998 * 109.47217 * 57.55113 * 1 2 3 33 33 H 1.08999 * 109.47076 * 177.55139 * 1 2 3 34 34 H 1.08994 * 110.36440 * 36.24611 * 4 2 1 35 35 H 1.08996 * 110.36515 * 274.03024 * 4 2 1 36 36 H 1.08004 * 120.03708 * 0.02874 * 9 8 6 37 37 H 1.07995 * 119.96345 * 180.28190 * 10 9 8 38 38 H 1.08004 * 126.58386 * 0.02892 * 13 12 11 39 39 H 1.08001 * 125.88906 * 180.11613 * 14 13 12 40 40 H 1.07998 * 125.72304 * 179.97438 * 16 15 14 41 41 H 1.07993 * 119.96373 * 179.97438 * 17 11 10 42 42 H 1.07997 * 120.04305 * 179.97438 * 18 17 11 43 43 H 1.08999 * 109.88455 * 120.47837 * 19 5 4 44 44 H 1.09001 * 109.88559 * 241.48951 * 19 5 4 45 45 H 0.97001 * 119.99990 * 93.54118 * 22 20 19 46 46 H 0.97001 * 119.99608 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9192 1.0182 0.0000 4 6 2.0853 -0.8067 1.2003 5 7 3.4281 -1.2430 0.7760 6 6 4.4477 -1.5592 1.5986 7 8 4.3334 -1.3975 2.7983 8 6 5.7036 -2.1017 1.0431 9 6 5.8937 -2.1510 -0.3401 10 6 7.0682 -2.6533 -0.8547 11 6 8.0600 -3.1208 0.0005 12 7 9.2492 -3.6356 -0.5258 13 6 9.5726 -3.7463 -1.8540 14 6 10.8036 -4.2883 -1.9116 15 7 11.2220 -4.5128 -0.6569 16 6 10.3005 -4.1264 0.1822 17 6 7.8722 -3.0782 1.3776 18 6 6.7021 -2.5729 1.8993 19 6 3.4707 -1.2757 -0.6932 20 6 2.0900 -0.8106 -1.2023 21 1 2.1972 -0.1736 -2.0802 22 7 1.2317 -1.9608 -1.4963 23 6 1.2886 -2.5611 -2.7257 24 1 1.9661 -2.1863 -3.4788 25 6 0.4749 -3.6506 -3.0046 26 7 -0.3510 -4.1070 -2.0870 27 14 0.5522 -4.4691 -4.6820 28 1 1.5698 -5.5504 -4.6587 29 1 -0.7756 -5.0460 -5.0128 30 1 0.9237 -3.4616 -5.7077 31 1 -0.3633 0.4753 0.9111 32 1 -0.3633 0.5514 -0.8672 33 1 -0.3633 -1.0267 -0.0439 34 1 1.4519 -1.6704 1.4023 35 1 2.1542 -0.1725 2.0841 36 1 5.1221 -1.7918 -1.0050 37 1 7.2177 -2.6875 -1.9237 38 1 8.9587 -3.4526 -2.6927 39 1 11.3568 -4.5088 -2.8126 40 1 10.3626 -4.1868 1.2587 41 1 8.6444 -3.4426 2.0388 42 1 6.5566 -2.5404 2.9689 43 1 4.2462 -0.6015 -1.0567 44 1 3.6720 -2.2908 -1.0358 45 1 0.6230 -2.2972 -0.8200 46 1 -0.9194 -4.8686 -2.2817 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054941648.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:14 Heat of formation + Delta-G solvation = 104.635716 kcal Electronic energy + Delta-G solvation = -28980.297980 eV Core-core repulsion = 25065.641642 eV Total energy + Delta-G solvation = -3914.656337 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.59123 -40.51707 -38.83215 -37.58668 -34.49598 -34.05312 -32.70198 -31.53445 -30.64473 -30.04420 -29.49215 -28.04146 -26.34021 -24.63656 -23.82531 -23.37328 -22.39917 -21.11685 -20.84568 -19.90390 -19.41198 -18.69026 -17.76440 -17.04770 -16.16338 -15.79656 -15.62741 -15.35116 -15.01133 -14.82313 -14.51800 -14.25912 -14.07337 -13.96660 -13.92791 -13.73512 -13.23586 -13.16210 -12.93876 -12.81467 -12.64030 -12.05802 -12.01003 -11.76055 -11.32198 -11.19668 -10.99421 -10.87870 -10.75606 -10.49098 -10.39482 -10.29308 -10.02409 -9.88742 -9.74310 -9.38106 -9.09063 -9.01433 -8.60331 -8.36263 -7.17594 -5.94039 -3.24893 0.29176 1.02585 1.84797 2.35465 2.79956 2.90300 3.12354 3.32347 3.37835 3.40315 3.68228 4.27218 4.31172 4.42375 4.43620 4.46339 4.60708 4.83148 4.93468 4.97606 5.05004 5.11196 5.23763 5.30826 5.34284 5.36458 5.51112 5.58429 5.62167 5.66632 5.74306 5.81957 5.91297 6.04033 6.06038 6.09242 6.12711 6.21849 6.23259 6.31844 6.38697 6.43599 6.51552 6.59671 6.85020 6.93611 7.53245 7.67968 7.69037 8.23111 8.25563 9.35737 9.89320 10.23742 11.27773 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.009701 B = 0.003293 C = 0.002595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2885.644073 B = 8499.963245 C =10787.176117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.114 4.114 3 H 0.080 0.920 4 C 0.114 3.886 5 N -0.598 5.598 6 C 0.570 3.430 7 O -0.550 6.550 8 C -0.131 4.131 9 C -0.092 4.092 10 C -0.139 4.139 11 C 0.150 3.850 12 N -0.411 5.411 13 C -0.050 4.050 14 C -0.025 4.025 15 N -0.486 5.486 16 C 0.189 3.811 17 C -0.146 4.146 18 C -0.034 4.034 19 C 0.056 3.944 20 C 0.170 3.830 21 H 0.073 0.927 22 N -0.711 5.711 23 C -0.252 4.252 24 H 0.073 0.927 25 C -0.005 4.005 26 N -0.927 5.927 27 Si 0.906 3.094 28 H -0.289 1.289 29 H -0.291 1.291 30 H -0.281 1.281 31 H 0.046 0.954 32 H 0.059 0.941 33 H 0.073 0.927 34 H 0.072 0.928 35 H 0.072 0.928 36 H 0.179 0.821 37 H 0.136 0.864 38 H 0.180 0.820 39 H 0.175 0.825 40 H 0.209 0.791 41 H 0.136 0.864 42 H 0.145 0.855 43 H 0.065 0.935 44 H 0.089 0.911 45 H 0.388 0.612 46 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.376 6.115 3.668 16.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.133 4.133 3 H 0.098 0.902 4 C -0.008 4.008 5 N -0.329 5.329 6 C 0.359 3.641 7 O -0.430 6.430 8 C -0.134 4.134 9 C -0.110 4.110 10 C -0.159 4.159 11 C 0.057 3.943 12 N -0.090 5.090 13 C -0.180 4.180 14 C -0.170 4.170 15 N -0.203 5.203 16 C -0.092 4.092 17 C -0.166 4.166 18 C -0.054 4.054 19 C -0.069 4.069 20 C 0.058 3.942 21 H 0.091 0.909 22 N -0.352 5.352 23 C -0.382 4.382 24 H 0.091 0.909 25 C -0.202 4.202 26 N -0.574 5.574 27 Si 0.737 3.263 28 H -0.217 1.217 29 H -0.217 1.217 30 H -0.206 1.206 31 H 0.065 0.935 32 H 0.078 0.922 33 H 0.092 0.908 34 H 0.091 0.909 35 H 0.091 0.909 36 H 0.195 0.805 37 H 0.154 0.846 38 H 0.197 0.803 39 H 0.192 0.808 40 H 0.226 0.774 41 H 0.154 0.846 42 H 0.163 0.837 43 H 0.083 0.917 44 H 0.107 0.893 45 H 0.224 0.776 46 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 15.061 5.777 4.371 16.713 hybrid contribution -0.809 -0.491 -1.033 1.401 sum 14.252 5.287 3.338 15.563 Atomic orbital electron populations 1.21573 0.93239 1.03554 1.00763 1.22665 0.97080 0.98467 0.95137 0.90202 1.22311 0.82305 0.98612 0.97566 1.48269 1.12059 1.65067 1.07552 1.17780 0.82605 0.78126 0.85568 1.90752 1.82317 1.55321 1.14609 1.20021 0.95595 1.03887 0.93920 1.22970 0.97576 0.94750 0.95688 1.20891 0.93208 1.01911 0.99858 1.18076 0.85323 0.97580 0.93332 1.43249 1.13375 1.45105 1.07251 1.22873 1.00053 1.09218 0.85816 1.22384 0.94375 1.04445 0.95835 1.70328 1.28261 1.20796 1.00952 1.25314 0.83554 1.00634 0.99717 1.20721 0.99408 1.04241 0.92230 1.21106 0.90610 0.92893 1.00784 1.23782 1.01814 1.02115 0.79219 1.21306 0.88115 0.89953 0.94835 0.90934 1.42474 1.45269 1.32602 1.14858 1.19202 1.18863 1.09550 0.90629 0.90943 1.24757 0.98757 0.98814 0.97919 1.69651 1.27062 1.27374 1.33288 0.86219 0.77012 0.79458 0.83616 1.21655 1.21698 1.20620 0.93514 0.92206 0.90812 0.90940 0.90924 0.80460 0.84572 0.80271 0.80769 0.77431 0.84596 0.83691 0.91681 0.89269 0.77622 0.93267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.94 8.99 37.16 0.33 -1.60 16 2 C -0.11 -1.62 3.52 -88.31 -0.31 -1.93 16 3 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 4 C 0.11 1.76 6.38 -2.53 -0.02 1.74 16 5 N -0.60 -9.40 3.33 -176.48 -0.59 -9.98 16 6 C 0.57 9.31 7.80 -12.42 -0.10 9.21 16 7 O -0.55 -10.34 16.59 5.29 0.09 -10.26 16 8 C -0.13 -1.79 5.87 -104.95 -0.62 -2.41 16 9 C -0.09 -1.12 8.60 -39.22 -0.34 -1.46 16 10 C -0.14 -1.51 9.45 -39.47 -0.37 -1.88 16 11 C 0.15 1.62 6.64 -83.59 -0.55 1.07 16 12 N -0.41 -4.35 2.98 -62.06 -0.19 -4.54 16 13 C -0.05 -0.49 10.85 -16.45 -0.18 -0.67 16 14 C -0.02 -0.26 11.85 -17.82 -0.21 -0.47 16 15 N -0.49 -5.90 11.24 -14.46 -0.16 -6.06 16 16 C 0.19 1.95 11.91 -89.58 -1.07 0.88 16 17 C -0.15 -1.47 9.45 -39.47 -0.37 -1.84 16 18 C -0.03 -0.41 9.58 -39.22 -0.38 -0.78 16 19 C 0.06 0.83 4.61 -3.06 -0.01 0.82 16 20 C 0.17 2.81 3.38 -65.94 -0.22 2.59 16 21 H 0.07 1.16 8.12 -51.93 -0.42 0.74 16 22 N -0.71 -15.30 4.60 -51.50 -0.24 -15.54 16 23 C -0.25 -6.16 9.98 -15.06 -0.15 -6.31 16 24 H 0.07 1.69 7.83 -52.48 -0.41 1.28 16 25 C -0.01 -0.14 5.50 -17.43 -0.10 -0.24 16 26 N -0.93 -25.99 13.06 55.49 0.72 -25.27 16 27 Si 0.91 20.78 29.55 -169.99 -5.02 15.76 16 28 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 29 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 30 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 31 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 32 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 33 H 0.07 1.28 6.18 -51.93 -0.32 0.96 16 34 H 0.07 1.22 8.04 -51.93 -0.42 0.81 16 35 H 0.07 1.07 7.98 -51.93 -0.41 0.66 16 36 H 0.18 2.13 2.73 -58.66 -0.16 1.97 16 37 H 0.14 1.21 6.79 -52.49 -0.36 0.85 16 38 H 0.18 1.29 7.13 -52.48 -0.37 0.91 16 39 H 0.18 1.35 8.06 -52.49 -0.42 0.93 16 40 H 0.21 1.42 7.05 -52.49 -0.37 1.05 16 41 H 0.14 0.97 6.75 -52.49 -0.35 0.62 16 42 H 0.15 1.63 7.66 -52.49 -0.40 1.23 16 43 H 0.07 0.79 6.73 -51.93 -0.35 0.44 16 44 H 0.09 1.48 6.63 -51.93 -0.34 1.14 16 45 H 0.39 9.09 6.03 -40.82 -0.25 8.85 16 46 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 LS Contribution 373.47 15.07 5.63 5.63 Total: -1.00 -31.56 373.47 -10.18 -41.74 By element: Atomic # 1 Polarization: 17.56 SS G_CDS: -5.77 Total: 11.80 kcal Atomic # 6 Polarization: 1.38 SS G_CDS: -4.66 Total: -3.28 kcal Atomic # 7 Polarization: -60.94 SS G_CDS: -0.45 Total: -61.39 kcal Atomic # 8 Polarization: -10.34 SS G_CDS: 0.09 Total: -10.26 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.76 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -31.56 -10.18 -41.74 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054941648.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.377 kcal (2) G-P(sol) polarization free energy of solvation -31.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 114.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.741 kcal (6) G-S(sol) free energy of system = (1) + (5) 104.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds