Wall clock time and date at job start Sat Apr 11 2020 06:05:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08994 * 110.64273 * 2 1 4 4 C 1.54322 * 110.87232 * 236.75416 * 2 1 3 5 5 N 1.47023 * 107.27171 * 219.37287 * 4 2 1 6 6 C 1.34776 * 125.64789 * 178.98773 * 5 4 2 7 7 O 1.21623 * 120.00280 * 354.74196 * 6 5 4 8 8 C 1.47291 * 119.99774 * 174.74448 * 6 5 4 9 9 C 1.37959 * 126.81020 * 335.01629 * 8 6 5 10 10 N 1.34152 * 107.88774 * 179.83830 * 9 8 6 11 11 H 0.97004 * 125.16497 * 180.17023 * 10 9 8 12 12 N 1.39772 * 109.67616 * 0.43645 * 10 9 8 13 13 C 1.31362 * 109.07636 * 359.72795 * 12 10 9 14 14 C 1.48291 * 126.51083 * 179.97438 * 13 12 10 15 15 C 1.39384 * 120.12188 * 144.76467 * 14 13 12 16 16 C 1.38009 * 119.87277 * 179.79185 * 15 14 13 17 17 C 1.38330 * 120.12361 * 0.47259 * 16 15 14 18 18 C 1.38324 * 120.25378 * 359.78219 * 17 16 15 19 19 C 1.38008 * 120.12624 * 359.97438 * 18 17 16 20 20 C 1.47423 * 108.70390 * 358.93971 * 5 4 2 21 21 C 1.54910 * 104.83032 * 24.12883 * 20 5 4 22 22 H 1.09003 * 111.00627 * 204.91449 * 21 20 5 23 23 N 1.46507 * 111.00200 * 81.06280 * 21 20 5 24 24 C 1.36940 * 119.99680 * 92.80975 * 23 21 20 25 25 H 1.07995 * 119.99925 * 359.97438 * 24 23 21 26 26 C 1.38808 * 119.99666 * 179.97438 * 24 23 21 27 27 N 1.31620 * 120.00265 * 359.97438 * 26 24 23 28 28 Si 1.86803 * 119.99766 * 179.97438 * 26 24 23 29 29 H 1.48494 * 109.47080 * 0.02562 * 28 26 24 30 30 H 1.48500 * 109.46724 * 120.00203 * 28 26 24 31 31 H 1.48498 * 109.46958 * 239.99849 * 28 26 24 32 32 H 1.08986 * 109.47403 * 296.85617 * 1 2 3 33 33 H 1.09007 * 109.46874 * 56.86025 * 1 2 3 34 34 H 1.09006 * 109.46990 * 176.85334 * 1 2 3 35 35 H 1.09008 * 109.88429 * 338.79236 * 4 2 1 36 36 H 1.09007 * 109.88316 * 99.95623 * 4 2 1 37 37 H 1.08000 * 126.05159 * 0.02562 * 9 8 6 38 38 H 1.07999 * 120.06712 * 0.03121 * 15 14 13 39 39 H 1.08000 * 119.94162 * 180.25577 * 16 15 14 40 40 H 1.08002 * 119.87027 * 179.76260 * 17 16 15 41 41 H 1.08004 * 119.93774 * 179.97438 * 18 17 16 42 42 H 1.08002 * 120.06499 * 180.02562 * 19 18 17 43 43 H 1.08995 * 110.36936 * 265.29382 * 20 5 4 44 44 H 1.08994 * 110.36884 * 142.96455 * 20 5 4 45 45 H 0.97000 * 120.00108 * 272.80165 * 23 21 20 46 46 H 0.97002 * 120.00176 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9143 1.0200 0.0000 4 6 2.0799 -0.7905 -1.2059 5 7 3.2495 -1.5470 -0.7354 6 6 4.0006 -2.3783 -1.4846 7 8 3.6745 -2.6270 -2.6296 8 6 5.2163 -2.9856 -0.9166 9 6 5.9829 -2.4888 0.1172 10 7 6.9951 -3.3438 0.3274 11 1 7.6853 -3.2379 1.0007 12 7 6.9078 -4.4074 -0.5753 13 6 5.8552 -4.2346 -1.3419 14 6 5.4000 -5.1322 -2.4310 15 6 4.0380 -5.3075 -2.6697 16 6 3.6201 -6.1407 -3.6875 17 6 4.5500 -6.8088 -4.4637 18 6 5.9028 -6.6428 -4.2279 19 6 6.3323 -5.8082 -3.2162 20 6 3.4653 -1.2447 0.6913 21 6 2.0790 -0.7934 1.2151 22 1 2.1820 -0.1491 2.0882 23 7 1.2295 -1.9488 1.5150 24 6 1.2037 -2.4693 2.7814 25 1 1.8099 -2.0284 3.5588 26 6 0.3984 -3.5635 3.0656 27 7 -0.3408 -4.1006 2.1182 28 14 0.3638 -4.2740 4.7929 29 1 1.2770 -3.4949 5.6670 30 1 -1.0184 -4.2001 5.3309 31 1 0.8046 -5.6915 4.7540 32 1 -0.3633 0.4642 0.9167 33 1 -0.3633 0.5619 -0.8606 34 1 -0.3633 -1.0262 -0.0564 35 1 1.3190 -1.4772 -1.5771 36 1 2.3776 -0.1014 -1.9964 37 1 5.7989 -1.5752 0.6629 38 1 3.3110 -4.7893 -2.0619 39 1 2.5651 -6.2741 -3.8760 40 1 4.2183 -7.4628 -5.2566 41 1 6.6244 -7.1672 -4.8368 42 1 7.3888 -5.6790 -3.0332 43 1 4.1929 -0.4410 0.8029 44 1 3.7993 -2.1364 1.2217 45 1 0.6852 -2.3449 0.8166 46 1 -0.9038 -4.8650 2.3170 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054943185.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:18 Heat of formation + Delta-G solvation = 84.435543 kcal Electronic energy + Delta-G solvation = -29791.910368 eV Core-core repulsion = 25876.378086 eV Total energy + Delta-G solvation = -3915.532282 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.15380 -39.37455 -38.70832 -37.30198 -33.89193 -32.80188 -32.47602 -30.85954 -30.58146 -30.02381 -29.62084 -27.80896 -26.04667 -24.01103 -23.41625 -23.10947 -22.31123 -21.19564 -20.17699 -19.42232 -19.22319 -17.62414 -17.29832 -16.65418 -16.22842 -15.88951 -15.24247 -15.11377 -14.75889 -14.57251 -14.34505 -14.06418 -13.84344 -13.56004 -13.26518 -13.13795 -12.94788 -12.78117 -12.51736 -12.45454 -12.13382 -11.92464 -11.52920 -11.21820 -11.16212 -11.10721 -10.96855 -10.79362 -10.70104 -10.48658 -10.27793 -10.01177 -9.97356 -9.70314 -9.54268 -9.06971 -8.80324 -8.72333 -8.27274 -8.14958 -7.05290 -5.85422 -3.15286 1.12047 1.61854 1.64005 2.42661 2.66304 3.36742 3.37376 3.42081 3.45578 3.68147 4.04392 4.36007 4.50294 4.63105 4.86717 5.02785 5.11376 5.15230 5.19144 5.32166 5.35919 5.38126 5.45856 5.52801 5.60636 5.62211 5.73877 5.78260 5.91900 5.96550 6.02226 6.14901 6.20337 6.21471 6.26977 6.33067 6.37137 6.49966 6.60426 6.63917 6.68465 6.74690 6.80449 6.92988 7.08177 7.12931 7.49646 7.60902 7.97539 8.32045 8.62965 9.44258 9.99703 10.34163 11.36496 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.009768 B = 0.003815 C = 0.003566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2865.881822 B = 7337.022008 C = 7850.207655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.115 4.115 3 H 0.078 0.922 4 C 0.120 3.880 5 N -0.600 5.600 6 C 0.605 3.395 7 O -0.544 6.544 8 C -0.265 4.265 9 C 0.105 3.895 10 N -0.467 5.467 11 H 0.442 0.558 12 N -0.286 5.286 13 C 0.170 3.830 14 C -0.020 4.020 15 C -0.052 4.052 16 C -0.123 4.123 17 C -0.110 4.110 18 C -0.134 4.134 19 C -0.091 4.091 20 C 0.063 3.937 21 C 0.172 3.828 22 H 0.073 0.927 23 N -0.707 5.707 24 C -0.248 4.248 25 H 0.072 0.928 26 C -0.006 4.006 27 N -0.926 5.926 28 Si 0.904 3.096 29 H -0.280 1.280 30 H -0.291 1.291 31 H -0.292 1.292 32 H 0.059 0.941 33 H 0.043 0.957 34 H 0.069 0.931 35 H 0.068 0.932 36 H 0.058 0.942 37 H 0.190 0.810 38 H 0.129 0.871 39 H 0.125 0.875 40 H 0.120 0.880 41 H 0.121 0.879 42 H 0.122 0.878 43 H 0.052 0.948 44 H 0.081 0.919 45 H 0.388 0.612 46 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.435 4.302 -7.587 15.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.135 4.135 3 H 0.096 0.904 4 C -0.003 4.003 5 N -0.333 5.333 6 C 0.394 3.606 7 O -0.422 6.422 8 C -0.280 4.280 9 C -0.044 4.044 10 N -0.173 5.173 11 H 0.286 0.714 12 N -0.106 5.106 13 C 0.002 3.998 14 C -0.022 4.022 15 C -0.071 4.071 16 C -0.141 4.141 17 C -0.129 4.129 18 C -0.152 4.152 19 C -0.110 4.110 20 C -0.063 4.063 21 C 0.059 3.941 22 H 0.091 0.909 23 N -0.347 5.347 24 C -0.379 4.379 25 H 0.089 0.911 26 C -0.203 4.203 27 N -0.573 5.573 28 Si 0.735 3.265 29 H -0.206 1.206 30 H -0.218 1.218 31 H -0.219 1.219 32 H 0.078 0.922 33 H 0.062 0.938 34 H 0.088 0.912 35 H 0.086 0.914 36 H 0.076 0.924 37 H 0.206 0.794 38 H 0.147 0.853 39 H 0.143 0.857 40 H 0.138 0.862 41 H 0.139 0.861 42 H 0.140 0.860 43 H 0.070 0.930 44 H 0.099 0.901 45 H 0.223 0.777 46 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 13.285 3.332 -7.751 15.738 hybrid contribution -0.429 0.104 1.161 1.242 sum 12.856 3.436 -6.591 14.850 Atomic orbital electron populations 1.21582 0.93440 1.03024 1.00750 1.22543 0.97156 0.98459 0.95388 0.90370 1.21924 0.87746 0.94249 0.96380 1.48129 1.29339 1.44355 1.11449 1.16726 0.81591 0.77709 0.84591 1.90775 1.72209 1.61402 1.17854 1.21221 1.02299 1.00133 1.04333 1.23250 0.88955 0.96129 0.96067 1.45888 1.24022 1.17405 1.29940 0.71360 1.77271 1.20610 1.08026 1.04742 1.21779 0.91236 0.92668 0.94138 1.17637 0.93490 0.96836 0.94229 1.21253 0.94464 0.94947 0.96473 1.21077 0.99875 0.97351 0.95810 1.21214 0.93227 0.99201 0.99209 1.20960 0.95868 0.99821 0.98545 1.21110 0.98983 0.95908 0.95003 1.23564 1.01415 1.00202 0.81124 1.21348 0.88441 0.89943 0.94327 0.90870 1.42353 1.49698 1.32433 1.10206 1.19243 1.21453 1.09868 0.87308 0.91052 1.24734 0.99407 0.98671 0.97489 1.69665 1.30653 1.25404 1.31562 0.86177 0.77299 0.78871 0.84133 1.20562 1.21797 1.21891 0.92224 0.93811 0.91222 0.91376 0.92376 0.79354 0.85323 0.85684 0.86165 0.86053 0.85975 0.92983 0.90081 0.77707 0.93405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.99 8.73 37.16 0.32 -1.67 16 2 C -0.12 -1.69 3.41 -88.78 -0.30 -1.99 16 3 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 4 C 0.12 1.90 6.46 -3.06 -0.02 1.88 16 5 N -0.60 -10.06 3.33 -171.83 -0.57 -10.63 16 6 C 0.60 11.06 6.98 -12.58 -0.09 10.97 16 7 O -0.54 -11.21 14.53 5.26 0.08 -11.14 16 8 C -0.26 -4.37 5.90 -102.95 -0.61 -4.98 16 9 C 0.11 1.32 10.20 -16.64 -0.17 1.15 16 10 N -0.47 -5.46 7.20 30.81 0.22 -5.24 16 11 H 0.44 3.32 8.96 -182.84 -1.64 1.69 16 12 N -0.29 -4.35 12.63 34.57 0.44 -3.92 16 13 C 0.17 2.88 6.93 -80.56 -0.56 2.32 16 14 C -0.02 -0.33 5.66 -104.91 -0.59 -0.92 16 15 C -0.05 -0.89 7.92 -39.24 -0.31 -1.21 16 16 C -0.12 -1.81 10.03 -39.63 -0.40 -2.20 16 17 C -0.11 -1.38 10.04 -39.52 -0.40 -1.77 16 18 C -0.13 -1.65 10.03 -39.63 -0.40 -2.05 16 19 C -0.09 -1.29 9.76 -39.24 -0.38 -1.67 16 20 C 0.06 0.97 4.91 -2.53 -0.01 0.96 16 21 C 0.17 2.96 3.46 -65.78 -0.23 2.73 16 22 H 0.07 1.21 8.09 -51.93 -0.42 0.79 16 23 N -0.71 -15.99 4.59 -51.35 -0.24 -16.23 16 24 C -0.25 -6.33 9.96 -15.06 -0.15 -6.48 16 25 H 0.07 1.75 7.83 -52.49 -0.41 1.34 16 26 C -0.01 -0.17 5.50 -17.43 -0.10 -0.26 16 27 N -0.93 -26.93 13.06 55.49 0.72 -26.20 16 28 Si 0.90 21.54 29.55 -169.99 -5.02 16.52 16 29 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 30 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 31 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 32 H 0.06 0.93 8.14 -51.94 -0.42 0.50 16 33 H 0.04 0.57 8.14 -51.92 -0.42 0.14 16 34 H 0.07 1.28 6.50 -51.93 -0.34 0.94 16 35 H 0.07 1.21 7.78 -51.92 -0.40 0.81 16 36 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.19 1.75 5.97 -52.49 -0.31 1.43 16 38 H 0.13 2.51 6.41 -52.49 -0.34 2.17 16 39 H 0.13 1.63 8.06 -52.49 -0.42 1.21 16 40 H 0.12 1.16 8.06 -52.49 -0.42 0.74 16 41 H 0.12 1.14 8.06 -52.48 -0.42 0.72 16 42 H 0.12 1.56 8.06 -52.49 -0.42 1.14 16 43 H 0.05 0.61 7.32 -51.93 -0.38 0.23 16 44 H 0.08 1.39 6.93 -51.93 -0.36 1.03 16 45 H 0.39 9.68 6.39 -40.82 -0.26 9.42 16 46 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 LS Contribution 377.40 15.07 5.69 5.69 Total: -1.00 -33.05 377.40 -10.45 -43.50 By element: Atomic # 1 Polarization: 20.22 SS G_CDS: -7.38 Total: 12.84 kcal Atomic # 6 Polarization: -0.81 SS G_CDS: -4.39 Total: -5.20 kcal Atomic # 7 Polarization: -62.79 SS G_CDS: 0.58 Total: -62.21 kcal Atomic # 8 Polarization: -11.21 SS G_CDS: 0.08 Total: -11.14 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -33.05 -10.45 -43.50 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054943185.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.932 kcal (2) G-P(sol) polarization free energy of solvation -33.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.497 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds