Wall clock time and date at job start Sat Apr 11 2020 06:05:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08994 * 110.64273 * 2 1 4 4 C 1.54322 * 110.87232 * 236.75416 * 2 1 3 5 5 N 1.47023 * 107.27171 * 219.37287 * 4 2 1 6 6 C 1.34776 * 125.64789 * 178.98773 * 5 4 2 7 7 O 1.21623 * 120.00280 * 354.74196 * 6 5 4 8 8 C 1.47291 * 119.99774 * 174.74448 * 6 5 4 9 9 C 1.37959 * 126.81020 * 335.01629 * 8 6 5 10 10 N 1.34152 * 107.88774 * 179.83830 * 9 8 6 11 11 H 0.97004 * 125.16497 * 180.17023 * 10 9 8 12 12 N 1.39772 * 109.67616 * 0.43645 * 10 9 8 13 13 C 1.31362 * 109.07636 * 359.72795 * 12 10 9 14 14 C 1.48291 * 126.51083 * 179.97438 * 13 12 10 15 15 C 1.39384 * 120.12188 * 144.76467 * 14 13 12 16 16 C 1.38009 * 119.87277 * 179.79185 * 15 14 13 17 17 C 1.38330 * 120.12361 * 0.47259 * 16 15 14 18 18 C 1.38324 * 120.25378 * 359.78219 * 17 16 15 19 19 C 1.38008 * 120.12624 * 359.97438 * 18 17 16 20 20 C 1.47423 * 108.70390 * 358.93971 * 5 4 2 21 21 C 1.54910 * 104.83032 * 24.12883 * 20 5 4 22 22 H 1.09003 * 111.00627 * 204.91449 * 21 20 5 23 23 N 1.46507 * 111.00200 * 81.06280 * 21 20 5 24 24 C 1.36940 * 119.99680 * 92.80975 * 23 21 20 25 25 H 1.07995 * 119.99925 * 359.97438 * 24 23 21 26 26 C 1.38808 * 119.99666 * 179.97438 * 24 23 21 27 27 N 1.31620 * 120.00265 * 359.97438 * 26 24 23 28 28 Si 1.86803 * 119.99766 * 179.97438 * 26 24 23 29 29 H 1.48494 * 109.47080 * 0.02562 * 28 26 24 30 30 H 1.48500 * 109.46724 * 120.00203 * 28 26 24 31 31 H 1.48498 * 109.46958 * 239.99849 * 28 26 24 32 32 H 1.08986 * 109.47403 * 296.85617 * 1 2 3 33 33 H 1.09007 * 109.46874 * 56.86025 * 1 2 3 34 34 H 1.09006 * 109.46990 * 176.85334 * 1 2 3 35 35 H 1.09008 * 109.88429 * 338.79236 * 4 2 1 36 36 H 1.09007 * 109.88316 * 99.95623 * 4 2 1 37 37 H 1.08000 * 126.05159 * 0.02562 * 9 8 6 38 38 H 1.07999 * 120.06712 * 0.03121 * 15 14 13 39 39 H 1.08000 * 119.94162 * 180.25577 * 16 15 14 40 40 H 1.08002 * 119.87027 * 179.76260 * 17 16 15 41 41 H 1.08004 * 119.93774 * 179.97438 * 18 17 16 42 42 H 1.08002 * 120.06499 * 180.02562 * 19 18 17 43 43 H 1.08995 * 110.36936 * 265.29382 * 20 5 4 44 44 H 1.08994 * 110.36884 * 142.96455 * 20 5 4 45 45 H 0.97000 * 120.00108 * 272.80165 * 23 21 20 46 46 H 0.97002 * 120.00176 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9143 1.0200 0.0000 4 6 2.0799 -0.7905 -1.2059 5 7 3.2495 -1.5470 -0.7354 6 6 4.0006 -2.3783 -1.4846 7 8 3.6745 -2.6270 -2.6296 8 6 5.2163 -2.9856 -0.9166 9 6 5.9829 -2.4888 0.1172 10 7 6.9951 -3.3438 0.3274 11 1 7.6853 -3.2379 1.0007 12 7 6.9078 -4.4074 -0.5753 13 6 5.8552 -4.2346 -1.3419 14 6 5.4000 -5.1322 -2.4310 15 6 4.0380 -5.3075 -2.6697 16 6 3.6201 -6.1407 -3.6875 17 6 4.5500 -6.8088 -4.4637 18 6 5.9028 -6.6428 -4.2279 19 6 6.3323 -5.8082 -3.2162 20 6 3.4653 -1.2447 0.6913 21 6 2.0790 -0.7934 1.2151 22 1 2.1820 -0.1491 2.0882 23 7 1.2295 -1.9488 1.5150 24 6 1.2037 -2.4693 2.7814 25 1 1.8099 -2.0284 3.5588 26 6 0.3984 -3.5635 3.0656 27 7 -0.3408 -4.1006 2.1182 28 14 0.3638 -4.2740 4.7929 29 1 1.2770 -3.4949 5.6670 30 1 -1.0184 -4.2001 5.3309 31 1 0.8046 -5.6915 4.7540 32 1 -0.3633 0.4642 0.9167 33 1 -0.3633 0.5619 -0.8606 34 1 -0.3633 -1.0262 -0.0564 35 1 1.3190 -1.4772 -1.5771 36 1 2.3776 -0.1014 -1.9964 37 1 5.7989 -1.5752 0.6629 38 1 3.3110 -4.7893 -2.0619 39 1 2.5651 -6.2741 -3.8760 40 1 4.2183 -7.4628 -5.2566 41 1 6.6244 -7.1672 -4.8368 42 1 7.3888 -5.6790 -3.0332 43 1 4.1929 -0.4410 0.8029 44 1 3.7993 -2.1364 1.2217 45 1 0.6852 -2.3449 0.8166 46 1 -0.9038 -4.8650 2.3170 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001054943185.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:17 Heat of formation + Delta-G solvation = 62.775175 kcal Electronic energy + Delta-G solvation = -29792.849632 eV Core-core repulsion = 25876.378086 eV Total energy + Delta-G solvation = -3916.471547 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.27957 -40.68686 -39.80008 -38.70656 -35.62361 -34.02689 -33.80087 -32.33323 -31.90780 -31.20781 -30.72449 -29.32676 -27.31714 -25.81247 -24.52364 -24.41905 -23.48298 -22.43833 -21.33118 -20.61323 -20.53628 -19.34987 -18.58919 -17.74342 -17.55157 -17.27596 -16.53567 -16.34025 -16.14185 -15.98927 -15.55012 -15.52002 -15.19162 -14.90811 -14.60746 -14.43006 -14.26534 -13.95956 -13.83503 -13.58169 -13.48447 -13.31978 -12.95915 -12.88689 -12.80193 -12.34267 -12.25030 -12.18200 -12.07476 -11.94489 -11.86100 -11.45349 -11.33901 -11.13227 -10.96547 -10.88284 -9.96938 -9.84917 -9.55320 -9.36670 -8.90182 -7.90480 -5.17546 -0.01252 0.49919 0.55234 1.23882 1.47466 1.48126 1.57153 1.69003 2.08605 2.41831 2.57832 2.91962 3.25418 3.42267 3.55987 3.63576 3.92608 4.00151 4.01173 4.08140 4.13762 4.17750 4.25099 4.27753 4.35938 4.47554 4.54484 4.68832 4.70346 4.70918 4.78929 4.89338 4.92763 5.00505 5.05620 5.11377 5.14075 5.26273 5.32585 5.51214 5.52164 5.56263 5.57322 5.62309 5.64393 6.05249 6.20057 6.30692 6.40546 6.66154 7.28914 7.37945 8.15364 8.36154 9.33353 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.009768 B = 0.003815 C = 0.003566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2865.881822 B = 7337.022008 C = 7850.207655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.099 4.099 3 H 0.122 0.878 4 C 0.118 3.882 5 N -0.603 5.603 6 C 0.598 3.402 7 O -0.581 6.581 8 C -0.308 4.308 9 C 0.135 3.865 10 N -0.446 5.446 11 H 0.462 0.538 12 N -0.299 5.299 13 C 0.149 3.851 14 C -0.043 4.043 15 C -0.081 4.081 16 C -0.137 4.137 17 C -0.104 4.104 18 C -0.124 4.124 19 C -0.097 4.097 20 C 0.071 3.929 21 C 0.158 3.842 22 H 0.093 0.907 23 N -0.721 5.721 24 C -0.228 4.228 25 H 0.087 0.913 26 C -0.076 4.076 27 N -0.971 5.971 28 Si 0.962 3.038 29 H -0.258 1.258 30 H -0.299 1.299 31 H -0.306 1.306 32 H 0.057 0.943 33 H 0.067 0.933 34 H 0.028 0.972 35 H 0.034 0.966 36 H 0.075 0.925 37 H 0.229 0.771 38 H 0.090 0.910 39 H 0.130 0.870 40 H 0.157 0.843 41 H 0.161 0.839 42 H 0.135 0.865 43 H 0.107 0.893 44 H 0.063 0.937 45 H 0.371 0.629 46 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.338 6.063 -7.050 17.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.118 4.118 3 H 0.140 0.860 4 C -0.004 4.004 5 N -0.334 5.334 6 C 0.388 3.612 7 O -0.462 6.462 8 C -0.322 4.322 9 C -0.016 4.016 10 N -0.154 5.154 11 H 0.311 0.689 12 N -0.121 5.121 13 C -0.019 4.019 14 C -0.045 4.045 15 C -0.101 4.101 16 C -0.155 4.155 17 C -0.122 4.122 18 C -0.142 4.142 19 C -0.117 4.117 20 C -0.054 4.054 21 C 0.048 3.952 22 H 0.111 0.889 23 N -0.360 5.360 24 C -0.359 4.359 25 H 0.105 0.895 26 C -0.268 4.268 27 N -0.622 5.622 28 Si 0.793 3.207 29 H -0.182 1.182 30 H -0.226 1.226 31 H -0.234 1.234 32 H 0.077 0.923 33 H 0.086 0.914 34 H 0.047 0.953 35 H 0.052 0.948 36 H 0.093 0.907 37 H 0.245 0.755 38 H 0.108 0.892 39 H 0.148 0.852 40 H 0.174 0.826 41 H 0.178 0.822 42 H 0.153 0.847 43 H 0.124 0.876 44 H 0.081 0.919 45 H 0.203 0.797 46 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 16.264 5.155 -7.165 18.505 hybrid contribution -1.264 -0.364 0.959 1.628 sum 14.999 4.791 -6.206 16.925 Atomic orbital electron populations 1.21510 0.94258 1.00787 1.01770 1.22527 0.96361 0.99876 0.93071 0.86014 1.21962 0.86954 0.93895 0.97602 1.48208 1.29138 1.44124 1.11976 1.17076 0.82245 0.77485 0.84358 1.90734 1.73358 1.62536 1.19621 1.21268 1.03017 1.01182 1.06780 1.23672 0.87396 0.96423 0.94145 1.45931 1.24067 1.16142 1.29273 0.68904 1.77193 1.20277 1.09310 1.05291 1.21988 0.91903 0.93260 0.94768 1.17870 0.93556 0.97783 0.95250 1.21070 0.94447 0.96717 0.97822 1.21282 1.00978 0.97471 0.95748 1.21599 0.92988 0.98556 0.99088 1.21431 0.96553 0.98554 0.97668 1.21361 0.99201 0.95934 0.95162 1.23537 1.01128 1.01041 0.79742 1.21725 0.88642 0.88621 0.96199 0.88927 1.42560 1.50612 1.33908 1.08877 1.19716 1.19182 1.08468 0.88583 0.89495 1.25461 1.00569 1.00208 1.00557 1.69838 1.32642 1.26254 1.33485 0.85224 0.77033 0.77515 0.80926 1.18181 1.22641 1.23416 0.92348 0.91362 0.95275 0.94772 0.90650 0.75521 0.89207 0.85161 0.82583 0.82170 0.84678 0.87558 0.91885 0.79652 0.94543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.77 8.73 71.98 0.63 -3.14 16 2 C -0.10 -2.67 3.41 -9.60 -0.03 -2.70 16 3 H 0.12 2.36 8.14 -2.39 -0.02 2.34 16 4 C 0.12 3.73 6.46 86.73 0.56 4.29 16 5 N -0.60 -19.93 3.33 -815.81 -2.71 -22.65 16 6 C 0.60 22.53 6.98 86.62 0.61 23.14 16 7 O -0.58 -25.56 14.53 -4.11 -0.06 -25.62 16 8 C -0.31 -10.19 5.90 -18.78 -0.11 -10.30 16 9 C 0.13 3.06 10.20 84.27 0.86 3.92 16 10 N -0.45 -9.42 7.20 -56.43 -0.41 -9.83 16 11 H 0.46 5.48 8.96 -213.53 -1.91 3.57 16 12 N -0.30 -8.93 12.63 -44.53 -0.56 -9.50 16 13 C 0.15 5.15 6.93 44.07 0.31 5.46 16 14 C -0.04 -1.48 5.66 -20.05 -0.11 -1.60 16 15 C -0.08 -3.03 7.92 22.49 0.18 -2.85 16 16 C -0.14 -4.22 10.03 22.24 0.22 -4.00 16 17 C -0.10 -2.48 10.04 22.31 0.22 -2.26 16 18 C -0.12 -2.83 10.03 22.24 0.22 -2.61 16 19 C -0.10 -2.73 9.76 22.49 0.22 -2.51 16 20 C 0.07 1.97 4.91 86.86 0.43 2.40 16 21 C 0.16 5.09 3.46 46.38 0.16 5.25 16 22 H 0.09 2.67 8.09 -2.39 -0.02 2.66 16 23 N -0.72 -32.83 4.59 -316.36 -1.45 -34.28 16 24 C -0.23 -11.56 9.96 84.03 0.84 -10.72 16 25 H 0.09 4.07 7.83 -2.91 -0.02 4.05 16 26 C -0.08 -4.21 5.50 84.86 0.47 -3.74 16 27 N -0.97 -59.22 13.06 21.65 0.28 -58.94 16 28 Si 0.96 45.03 29.55 68.60 2.03 47.06 16 29 H -0.26 -10.93 7.11 99.48 0.71 -10.23 16 30 H -0.30 -14.19 7.11 99.48 0.71 -13.48 16 31 H -0.31 -14.86 7.11 99.48 0.71 -14.15 16 32 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 33 H 0.07 1.69 8.14 -2.38 -0.02 1.67 16 34 H 0.03 1.10 6.50 -2.38 -0.02 1.09 16 35 H 0.03 1.29 7.78 -2.38 -0.02 1.28 16 36 H 0.08 2.11 8.14 -2.38 -0.02 2.09 16 37 H 0.23 3.14 5.97 -2.91 -0.02 3.12 16 38 H 0.09 3.97 6.41 -2.91 -0.02 3.95 16 39 H 0.13 3.68 8.06 -2.91 -0.02 3.65 16 40 H 0.16 2.56 8.06 -2.91 -0.02 2.53 16 41 H 0.16 2.38 8.06 -2.91 -0.02 2.36 16 42 H 0.14 3.32 8.06 -2.91 -0.02 3.30 16 43 H 0.11 1.89 7.32 -2.39 -0.02 1.87 16 44 H 0.06 2.02 6.93 -2.39 -0.02 2.01 16 45 H 0.37 19.40 6.39 -92.71 -0.59 18.81 16 46 H 0.25 14.78 8.31 -92.71 -0.77 14.01 16 Total: -1.00 -78.81 377.40 1.30 -77.50 By element: Atomic # 1 Polarization: 39.70 SS G_CDS: -1.47 Total: 38.23 kcal Atomic # 6 Polarization: -7.63 SS G_CDS: 5.66 Total: -1.97 kcal Atomic # 7 Polarization: -130.34 SS G_CDS: -4.85 Total: -135.19 kcal Atomic # 8 Polarization: -25.56 SS G_CDS: -0.06 Total: -25.62 kcal Atomic # 14 Polarization: 45.03 SS G_CDS: 2.03 Total: 47.06 kcal Total: -78.81 1.30 -77.50 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054943185.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.279 kcal (2) G-P(sol) polarization free energy of solvation -78.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.504 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds