Wall clock time and date at job start Sat Apr 11 2020 06:05:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08993 * 110.64254 * 2 1 4 4 C 1.54321 * 110.72212 * 236.66137 * 2 1 3 5 5 N 1.47028 * 107.27211 * 219.44803 * 4 2 1 6 6 C 1.34776 * 125.64655 * 178.96383 * 5 4 2 7 7 O 1.21614 * 120.00097 * 354.74018 * 6 5 4 8 8 C 1.47294 * 119.99827 * 174.73882 * 6 5 4 9 9 C 1.37962 * 126.80700 * 335.02508 * 8 6 5 10 10 N 1.34156 * 107.88439 * 180.02562 * 9 8 6 11 11 H 0.97004 * 125.16235 * 179.97438 * 10 9 8 12 12 N 1.39770 * 109.67847 * 0.02562 * 10 9 8 13 13 C 1.31372 * 109.07638 * 359.70528 * 12 10 9 14 14 C 1.48290 * 126.51280 * 180.26021 * 13 12 10 15 15 C 1.39378 * 120.12385 * 144.94206 * 14 13 12 16 16 C 1.38006 * 119.87265 * 179.74966 * 15 14 13 17 17 C 1.38325 * 120.12579 * 0.52773 * 16 15 14 18 18 C 1.38332 * 120.25227 * 359.74132 * 17 16 15 19 19 C 1.38008 * 120.12197 * 359.97438 * 18 17 16 20 20 C 1.47424 * 108.70261 * 358.93698 * 5 4 2 21 21 C 1.54910 * 104.83155 * 24.13313 * 20 5 4 22 22 H 1.08999 * 111.03528 * 81.07715 * 21 20 5 23 23 N 1.46495 * 111.00398 * 204.91440 * 21 20 5 24 24 C 1.36944 * 119.99921 * 267.19594 * 23 21 20 25 25 H 1.08000 * 119.99654 * 0.02562 * 24 23 21 26 26 C 1.38815 * 119.99730 * 180.02562 * 24 23 21 27 27 N 1.31613 * 120.00186 * 359.97438 * 26 24 23 28 28 Si 1.86796 * 119.99595 * 180.27719 * 26 24 23 29 29 H 1.48493 * 109.47175 * 179.72519 * 28 26 24 30 30 H 1.48504 * 109.47247 * 299.72188 * 28 26 24 31 31 H 1.48498 * 109.47518 * 59.71867 * 28 26 24 32 32 H 1.08997 * 109.47525 * 296.86058 * 1 2 3 33 33 H 1.09000 * 109.46770 * 56.85924 * 1 2 3 34 34 H 1.09007 * 109.46965 * 176.85908 * 1 2 3 35 35 H 1.09001 * 109.88297 * 338.86546 * 4 2 1 36 36 H 1.08996 * 109.88098 * 99.87411 * 4 2 1 37 37 H 1.07998 * 126.05844 * 0.03004 * 9 8 6 38 38 H 1.08004 * 120.06454 * 359.97438 * 15 14 13 39 39 H 1.08007 * 119.94060 * 180.27603 * 16 15 14 40 40 H 1.07996 * 119.87564 * 179.72801 * 17 16 15 41 41 H 1.08001 * 119.93693 * 179.97438 * 18 17 16 42 42 H 1.08002 * 120.05957 * 180.02562 * 19 18 17 43 43 H 1.08996 * 110.36786 * 265.29564 * 20 5 4 44 44 H 1.09004 * 110.36515 * 142.96844 * 20 5 4 45 45 H 0.96999 * 120.00352 * 87.19648 * 23 21 20 46 46 H 0.96998 * 120.00420 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9142 1.0200 0.0000 4 6 2.0760 -0.7933 -1.2059 5 7 3.2445 -1.5521 -0.7362 6 6 3.9921 -2.3864 -1.4855 7 8 3.6634 -2.6360 -2.6294 8 6 5.2074 -2.9960 -0.9187 9 6 5.9770 -2.4997 0.1130 10 7 6.9898 -3.3548 0.3198 11 1 7.6834 -3.2478 0.9895 12 7 6.8946 -4.4228 -0.5768 13 6 5.8360 -4.2529 -1.3361 14 6 5.3683 -5.1584 -2.4132 15 6 4.0037 -5.3277 -2.6412 16 6 3.5742 -6.1677 -3.6485 17 6 4.4948 -6.8493 -4.4239 18 6 5.8503 -6.6894 -4.1984 19 6 6.2913 -5.8475 -3.1978 20 6 3.4633 -1.2486 0.6898 21 6 2.0789 -0.7934 1.2152 22 1 1.4448 -1.6508 1.4408 23 7 2.2214 0.0736 2.3874 24 6 2.1866 -0.4652 3.6459 25 1 2.0546 -1.5294 3.7742 26 6 2.3211 0.3565 4.7566 27 7 2.4824 1.6533 4.6002 28 14 2.2814 -0.3795 6.4730 29 1 2.4513 0.7000 7.4785 30 1 0.9785 -1.0581 6.6907 31 1 3.3827 -1.3656 6.6144 32 1 -0.3634 0.4643 0.9167 33 1 -0.3633 0.5618 -0.8605 34 1 -0.3633 -1.0262 -0.0563 35 1 1.3130 -1.4785 -1.5750 36 1 2.3716 -0.1060 -1.9985 37 1 5.7962 -1.5848 0.6578 38 1 3.2839 -4.7998 -2.0332 39 1 2.5171 -6.2963 -3.8290 40 1 4.1542 -7.5090 -5.2081 41 1 6.5646 -7.2244 -4.8066 42 1 7.3498 -5.7231 -3.0229 43 1 4.1931 -0.4465 0.7993 44 1 3.7960 -2.1406 1.2207 45 1 2.3403 1.0294 2.2722 46 1 2.5768 2.2275 5.3763 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001054943186.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:21 Heat of formation + Delta-G solvation = 60.987010 kcal Electronic energy + Delta-G solvation = -29166.557791 eV Core-core repulsion = 25250.008704 eV Total energy + Delta-G solvation = -3916.549087 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.32242 -40.70361 -39.77683 -38.70126 -35.83184 -34.07431 -33.81874 -32.57483 -31.90293 -31.24723 -30.70924 -29.13603 -27.35885 -25.90161 -24.50633 -24.24986 -23.36309 -22.36158 -21.53675 -21.07176 -20.54141 -19.11499 -18.68651 -17.74301 -17.65608 -17.32811 -16.54746 -16.30719 -16.25763 -15.89202 -15.54858 -15.31054 -15.27812 -14.86873 -14.52356 -14.42709 -14.34726 -14.13612 -13.95864 -13.81378 -13.56272 -13.18509 -12.99853 -12.86321 -12.80728 -12.35796 -12.23514 -12.18140 -12.10969 -11.97886 -11.87005 -11.68950 -11.38986 -11.16157 -10.96766 -10.88932 -10.01538 -9.81858 -9.58456 -9.37537 -9.00411 -7.92545 -5.21410 0.00201 0.48005 0.53883 1.22926 1.51156 1.52322 1.57984 1.63585 2.02411 2.29065 2.58162 2.94099 3.21655 3.38991 3.51506 3.58656 3.84453 3.96952 4.02478 4.07698 4.14545 4.19826 4.23126 4.29197 4.32773 4.41071 4.52023 4.57723 4.60959 4.71173 4.74692 4.88569 4.91537 4.94667 5.12005 5.13722 5.14997 5.15671 5.29855 5.41310 5.49118 5.55635 5.57974 5.60201 5.62888 6.07889 6.13776 6.28363 6.37120 6.55459 7.21047 7.37000 8.08258 8.33269 9.29679 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.013875 B = 0.002983 C = 0.002665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2017.605514 B = 9384.381606 C =10505.745331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.104 4.104 3 H 0.082 0.918 4 C 0.122 3.878 5 N -0.609 5.609 6 C 0.604 3.396 7 O -0.569 6.569 8 C -0.306 4.306 9 C 0.130 3.870 10 N -0.448 5.448 11 H 0.461 0.539 12 N -0.298 5.298 13 C 0.156 3.844 14 C -0.044 4.044 15 C -0.078 4.078 16 C -0.132 4.132 17 C -0.105 4.105 18 C -0.127 4.127 19 C -0.100 4.100 20 C 0.082 3.918 21 C 0.172 3.828 22 H 0.061 0.939 23 N -0.717 5.717 24 C -0.239 4.239 25 H 0.076 0.924 26 C -0.064 4.064 27 N -0.963 5.963 28 Si 0.963 3.037 29 H -0.300 1.300 30 H -0.282 1.282 31 H -0.278 1.278 32 H 0.047 0.953 33 H 0.072 0.928 34 H 0.058 0.942 35 H 0.070 0.930 36 H 0.070 0.930 37 H 0.212 0.788 38 H 0.104 0.896 39 H 0.140 0.860 40 H 0.155 0.845 41 H 0.154 0.846 42 H 0.129 0.871 43 H 0.072 0.928 44 H 0.071 0.929 45 H 0.378 0.622 46 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.780 -12.130 -15.028 20.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.124 4.124 3 H 0.101 0.899 4 C 0.000 4.000 5 N -0.342 5.342 6 C 0.394 3.606 7 O -0.449 6.449 8 C -0.321 4.321 9 C -0.022 4.022 10 N -0.155 5.155 11 H 0.309 0.691 12 N -0.119 5.119 13 C -0.013 4.013 14 C -0.046 4.046 15 C -0.098 4.098 16 C -0.150 4.150 17 C -0.124 4.124 18 C -0.145 4.145 19 C -0.120 4.120 20 C -0.043 4.043 21 C 0.061 3.939 22 H 0.079 0.921 23 N -0.355 5.355 24 C -0.371 4.371 25 H 0.094 0.906 26 C -0.257 4.257 27 N -0.613 5.613 28 Si 0.793 3.207 29 H -0.226 1.226 30 H -0.209 1.209 31 H -0.204 1.204 32 H 0.066 0.934 33 H 0.091 0.909 34 H 0.077 0.923 35 H 0.089 0.911 36 H 0.088 0.912 37 H 0.229 0.771 38 H 0.123 0.877 39 H 0.158 0.842 40 H 0.172 0.828 41 H 0.172 0.828 42 H 0.147 0.853 43 H 0.090 0.910 44 H 0.090 0.910 45 H 0.211 0.789 46 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 6.649 -13.147 -15.200 21.168 hybrid contribution -0.244 1.193 1.631 2.036 sum 6.405 -11.954 -13.569 19.184 Atomic orbital electron populations 1.21619 0.92935 1.02138 1.01999 1.22431 0.97332 0.99265 0.93339 0.89946 1.21966 0.87231 0.94261 0.96550 1.48290 1.30021 1.44148 1.11764 1.16958 0.81839 0.77532 0.84241 1.90749 1.72716 1.62674 1.18775 1.21236 1.03330 1.01024 1.06508 1.23615 0.87854 0.96162 0.94545 1.45990 1.23769 1.16109 1.29665 0.69096 1.77230 1.20042 1.08955 1.05665 1.22013 0.91579 0.92943 0.94725 1.17863 0.93987 0.97535 0.95213 1.21122 0.94017 0.96633 0.97993 1.21324 1.01166 0.97014 0.95483 1.21620 0.92953 0.98669 0.99123 1.21400 0.96733 0.98619 0.97724 1.21336 0.99231 0.96016 0.95375 1.23324 1.01311 1.00368 0.79344 1.21479 0.92789 0.93295 0.86339 0.92114 1.42347 1.86401 1.06236 1.00556 1.19517 1.40529 0.92777 0.84294 0.90642 1.25397 1.03493 0.95784 1.01030 1.69774 1.58095 1.03727 1.29743 0.85378 0.78037 0.76825 0.80484 1.22606 1.20869 1.20390 0.93372 0.90899 0.92309 0.91134 0.91189 0.77131 0.87745 0.84196 0.82752 0.82793 0.85337 0.90970 0.91014 0.78907 0.94036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.39 9.16 71.98 0.66 -2.73 16 2 C -0.10 -2.98 3.20 -9.60 -0.03 -3.01 16 3 H 0.08 2.43 8.00 -2.39 -0.02 2.41 16 4 C 0.12 3.38 6.47 86.73 0.56 3.94 16 5 N -0.61 -18.23 3.33 -815.81 -2.71 -20.95 16 6 C 0.60 19.75 6.96 86.63 0.60 20.35 16 7 O -0.57 -21.22 14.59 -4.07 -0.06 -21.28 16 8 C -0.31 -9.12 5.90 -18.78 -0.11 -9.23 16 9 C 0.13 3.04 10.20 84.27 0.86 3.90 16 10 N -0.45 -9.46 7.20 -56.43 -0.41 -9.87 16 11 H 0.46 6.14 8.96 -213.53 -1.91 4.23 16 12 N -0.30 -8.13 12.63 -44.53 -0.56 -8.70 16 13 C 0.16 4.70 6.93 44.07 0.31 5.01 16 14 C -0.04 -1.28 5.66 -20.05 -0.11 -1.39 16 15 C -0.08 -2.24 7.93 22.49 0.18 -2.06 16 16 C -0.13 -2.99 10.03 22.24 0.22 -2.76 16 17 C -0.11 -1.91 10.04 22.31 0.22 -1.69 16 18 C -0.13 -2.37 10.03 22.24 0.22 -2.15 16 19 C -0.10 -2.41 9.76 22.49 0.22 -2.19 16 20 C 0.08 2.49 4.91 86.86 0.43 2.91 16 21 C 0.17 5.90 3.16 46.39 0.15 6.05 16 22 H 0.06 2.20 8.00 -2.39 -0.02 2.18 16 23 N -0.72 -31.40 5.24 -316.36 -1.66 -33.06 16 24 C -0.24 -11.89 9.96 84.03 0.84 -11.06 16 25 H 0.08 3.63 7.83 -2.91 -0.02 3.60 16 26 C -0.06 -3.37 5.50 84.86 0.47 -2.90 16 27 N -0.96 -54.47 13.06 21.65 0.28 -54.19 16 28 Si 0.96 43.03 29.55 68.60 2.03 45.05 16 29 H -0.30 -13.72 7.11 99.48 0.71 -13.01 16 30 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 31 H -0.28 -11.92 7.11 99.48 0.71 -11.21 16 32 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 33 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 34 H 0.06 1.46 8.06 -2.38 -0.02 1.44 16 35 H 0.07 1.91 7.76 -2.39 -0.02 1.89 16 36 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 37 H 0.21 4.08 5.97 -2.91 -0.02 4.06 16 38 H 0.10 3.34 6.43 -2.91 -0.02 3.32 16 39 H 0.14 2.57 8.06 -2.91 -0.02 2.55 16 40 H 0.15 1.73 8.06 -2.91 -0.02 1.71 16 41 H 0.15 1.85 8.06 -2.91 -0.02 1.82 16 42 H 0.13 2.83 8.06 -2.91 -0.02 2.81 16 43 H 0.07 2.14 7.32 -2.39 -0.02 2.12 16 44 H 0.07 2.16 6.93 -2.39 -0.02 2.14 16 45 H 0.38 17.96 7.76 -92.71 -0.72 17.24 16 46 H 0.25 13.97 8.31 -92.71 -0.77 13.20 16 Total: -1.00 -67.32 380.73 0.98 -66.34 By element: Atomic # 1 Polarization: 37.27 SS G_CDS: -1.60 Total: 35.66 kcal Atomic # 6 Polarization: -4.69 SS G_CDS: 5.68 Total: 0.99 kcal Atomic # 7 Polarization: -121.70 SS G_CDS: -5.06 Total: -126.76 kcal Atomic # 8 Polarization: -21.22 SS G_CDS: -0.06 Total: -21.28 kcal Atomic # 14 Polarization: 43.03 SS G_CDS: 2.03 Total: 45.05 kcal Total: -67.32 0.98 -66.34 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054943186.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.323 kcal (2) G-P(sol) polarization free energy of solvation -67.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.336 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds