Wall clock time and date at job start Sat Apr 11 2020 06:05:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.58629 * 2 1 4 4 C 1.53199 * 109.58227 * 120.42273 * 2 1 3 5 5 C 1.53044 * 109.30985 * 174.42209 * 4 2 1 6 6 C 1.53042 * 109.54114 * 298.63962 * 5 4 2 7 7 H 1.08995 * 109.49611 * 181.31881 * 6 5 4 8 8 N 1.46496 * 109.51870 * 301.39662 * 6 5 4 9 9 C 1.34781 * 119.99938 * 204.85583 * 8 6 5 10 10 O 1.21490 * 119.99738 * 359.97438 * 9 8 6 11 11 C 1.48352 * 120.00138 * 180.02562 * 9 8 6 12 12 C 1.40172 * 119.20250 * 179.73063 * 11 9 8 13 13 C 1.36615 * 119.70692 * 179.71784 * 12 11 9 14 14 C 1.40598 * 118.20850 * 0.53742 * 13 12 11 15 15 C 1.40732 * 121.37609 * 179.75384 * 14 13 12 16 16 C 1.36589 * 118.13308 * 179.97438 * 15 14 13 17 17 C 1.39432 * 119.84485 * 359.97438 * 16 15 14 18 18 N 1.31014 * 121.84009 * 0.02562 * 17 16 15 19 19 C 1.33861 * 121.42424 * 359.97438 * 18 17 16 20 20 N 1.31881 * 119.20267 * 359.97438 * 11 9 8 21 21 C 1.53190 * 109.31227 * 61.36030 * 6 5 4 22 22 N 1.46916 * 109.58944 * 239.71063 * 2 1 3 23 23 C 1.36935 * 120.63190 * 6.63012 * 22 2 1 24 24 H 1.07999 * 120.00320 * 329.22515 * 23 22 2 25 25 C 1.38822 * 120.00123 * 149.22234 * 23 22 2 26 26 N 1.31620 * 119.99894 * 345.91144 * 25 23 22 27 27 Si 1.86801 * 119.99668 * 165.91084 * 25 23 22 28 28 H 1.48506 * 109.46773 * 90.00394 * 27 25 23 29 29 H 1.48501 * 109.46790 * 210.00013 * 27 25 23 30 30 H 1.48498 * 109.47308 * 330.00413 * 27 25 23 31 31 H 1.08998 * 109.46787 * 180.28463 * 1 2 3 32 32 H 1.08997 * 109.47490 * 300.28455 * 1 2 3 33 33 H 1.08997 * 109.46927 * 60.29105 * 1 2 3 34 34 H 1.09001 * 109.50048 * 294.37654 * 4 2 1 35 35 H 1.08998 * 109.49708 * 54.47428 * 4 2 1 36 36 H 1.09000 * 109.46212 * 178.61275 * 5 4 2 37 37 H 1.09003 * 109.46176 * 58.65780 * 5 4 2 38 38 H 0.97001 * 120.00927 * 24.85456 * 8 6 5 39 39 H 1.08003 * 120.14350 * 359.97438 * 12 11 9 40 40 H 1.08001 * 120.90062 * 180.24066 * 13 12 11 41 41 H 1.08001 * 120.93687 * 359.97159 * 15 14 13 42 42 H 1.07998 * 120.07440 * 180.02562 * 16 15 14 43 43 H 1.08003 * 119.07954 * 179.97438 * 17 16 15 44 44 H 1.09000 * 109.58135 * 185.57547 * 21 6 5 45 45 H 1.09006 * 109.58248 * 65.15897 * 21 6 5 46 46 H 0.96997 * 119.99522 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0435 -0.7309 1.2446 5 6 3.5675 -0.8494 1.1693 6 6 3.9570 -1.6656 -0.0654 7 1 5.0412 -1.7694 -0.1056 8 7 3.3412 -2.9927 0.0109 9 6 3.8966 -4.0319 -0.6434 10 8 4.9076 -3.8680 -1.2967 11 6 3.2727 -5.3757 -0.5666 12 6 3.8612 -6.4435 -1.2582 13 6 3.2986 -7.6865 -1.1900 14 6 2.1284 -7.8454 -0.4270 15 6 1.4905 -9.0949 -0.3152 16 6 0.3576 -9.1740 0.4436 17 6 -0.1324 -8.0342 1.0799 18 7 0.4643 -6.8727 0.9734 19 6 1.5780 -6.7244 0.2458 20 7 2.1751 -5.5357 0.1468 21 6 3.4651 -0.9453 -1.3247 22 7 2.0226 -0.6981 -1.1952 23 6 1.1539 -1.1101 -2.1702 24 1 0.1442 -1.3918 -1.9101 25 6 1.5709 -1.1656 -3.4932 26 7 2.6876 -0.5712 -3.8567 27 14 0.5473 -2.0841 -4.7573 28 1 -0.4376 -1.1545 -5.3666 29 1 1.4371 -2.6258 -5.8156 30 1 -0.1714 -3.2020 -4.0947 31 1 -0.3633 -1.0276 0.0051 32 1 -0.3634 0.5182 0.8874 33 1 -0.3633 0.5093 -0.8926 34 1 1.7659 -0.1694 2.1367 35 1 1.6029 -1.7269 1.2893 36 1 3.9378 -1.3473 2.0654 37 1 4.0061 0.1460 1.0997 38 1 2.5337 -3.1236 0.5323 39 1 4.7578 -6.2850 -1.8391 40 1 3.7380 -8.5236 -1.7121 41 1 1.8857 -9.9667 -0.8154 42 1 -0.1569 -10.1175 0.5512 43 1 -1.0294 -8.1108 1.6766 44 1 3.6520 -1.5691 -2.1988 45 1 3.9904 0.0038 -1.4315 46 1 2.9791 -0.6104 -4.7810 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071518052.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:32 Heat of formation + Delta-G solvation = 62.066554 kcal Electronic energy + Delta-G solvation = -30165.444744 eV Core-core repulsion = 26248.942469 eV Total energy + Delta-G solvation = -3916.502275 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.33586 -39.55554 -38.02261 -37.09090 -34.39448 -33.99364 -32.66920 -31.51292 -31.06084 -30.28476 -29.79270 -26.40364 -25.56330 -24.84591 -24.29412 -22.75526 -22.11313 -21.38897 -20.31546 -18.94212 -18.65349 -18.10108 -17.30232 -16.31942 -16.14753 -15.41289 -15.34337 -15.08766 -14.71665 -14.36777 -14.21314 -14.12740 -13.84431 -13.70281 -13.35913 -13.28729 -13.05709 -12.80331 -12.43741 -12.19986 -12.05487 -11.79857 -11.25909 -11.18044 -11.08070 -10.91671 -10.79883 -10.74709 -10.65269 -10.31849 -10.26212 -9.89685 -9.76663 -9.45485 -9.38380 -9.09464 -9.08730 -9.04716 -8.39246 -8.32883 -6.50672 -5.68996 -3.13301 -0.04901 0.37491 1.72719 2.37282 3.31946 3.40544 3.44539 3.48009 3.50266 3.72614 4.11939 4.21353 4.42046 4.48545 4.55690 4.56463 4.79317 4.93828 5.12134 5.20067 5.38893 5.42961 5.48344 5.49622 5.59481 5.66879 5.67825 5.69284 5.95391 6.01664 6.09179 6.19881 6.22105 6.40768 6.42214 6.44409 6.52799 6.58540 6.71079 6.74963 6.94412 7.13057 7.18690 7.22612 7.42114 7.72895 7.91011 7.93556 8.15559 8.56635 8.70416 9.30674 9.94492 10.51433 11.39194 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.010360 B = 0.004180 C = 0.003904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2701.980787 B = 6697.623294 C = 7169.806685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.167 3.833 3 H 0.025 0.975 4 C -0.133 4.133 5 C -0.118 4.118 6 C 0.114 3.886 7 H 0.078 0.922 8 N -0.671 5.671 9 C 0.563 3.437 10 O -0.535 6.535 11 C 0.160 3.840 12 C -0.127 4.127 13 C -0.052 4.052 14 C -0.146 4.146 15 C -0.046 4.046 16 C -0.178 4.178 17 C 0.155 3.845 18 N -0.456 5.456 19 C 0.303 3.697 20 N -0.433 5.433 21 C 0.163 3.837 22 N -0.582 5.582 23 C -0.244 4.244 24 H 0.066 0.934 25 C 0.006 3.994 26 N -0.900 5.900 27 Si 0.893 3.107 28 H -0.287 1.287 29 H -0.290 1.290 30 H -0.282 1.282 31 H 0.052 0.948 32 H 0.037 0.963 33 H 0.060 0.940 34 H 0.053 0.947 35 H 0.058 0.942 36 H 0.052 0.948 37 H 0.072 0.928 38 H 0.408 0.592 39 H 0.157 0.843 40 H 0.148 0.852 41 H 0.142 0.858 42 H 0.142 0.858 43 H 0.167 0.833 44 H 0.095 0.905 45 H 0.028 0.972 46 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.755 -16.088 10.669 19.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.060 3.940 3 H 0.043 0.957 4 C -0.172 4.172 5 C -0.156 4.156 6 C 0.008 3.992 7 H 0.096 0.904 8 N -0.321 5.321 9 C 0.346 3.654 10 O -0.411 6.411 11 C 0.002 3.998 12 C -0.148 4.148 13 C -0.079 4.079 14 C -0.152 4.152 15 C -0.073 4.073 16 C -0.198 4.198 17 C -0.023 4.023 18 N -0.165 5.165 19 C 0.065 3.935 20 N -0.145 5.145 21 C 0.037 3.963 22 N -0.305 5.305 23 C -0.374 4.374 24 H 0.084 0.916 25 C -0.192 4.192 26 N -0.544 5.544 27 Si 0.723 3.277 28 H -0.214 1.214 29 H -0.216 1.216 30 H -0.207 1.207 31 H 0.071 0.929 32 H 0.056 0.944 33 H 0.079 0.921 34 H 0.072 0.928 35 H 0.077 0.923 36 H 0.070 0.930 37 H 0.090 0.910 38 H 0.246 0.754 39 H 0.175 0.825 40 H 0.166 0.834 41 H 0.160 0.840 42 H 0.160 0.840 43 H 0.184 0.816 44 H 0.113 0.887 45 H 0.046 0.954 46 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -0.657 -14.377 10.905 18.057 hybrid contribution -0.325 -2.041 -1.462 2.531 sum -0.981 -16.418 9.443 18.965 Atomic orbital electron populations 1.21795 0.96138 1.01315 1.00097 1.20459 0.92928 0.93534 0.87088 0.95746 1.22086 0.95068 1.01005 0.99051 1.21685 0.97184 1.00067 0.96650 1.21921 0.97012 0.81536 0.98693 0.90384 1.45776 1.29271 1.08024 1.49016 1.17702 0.84118 0.83086 0.80527 1.90767 1.24940 1.84048 1.41392 1.21723 0.90370 0.95516 0.92198 1.21902 1.01807 0.92001 0.99073 1.21428 0.93048 0.97897 0.95492 1.19723 0.98256 0.96097 1.01090 1.21471 0.94149 0.96080 0.95554 1.22018 0.97749 1.00741 0.99336 1.23119 0.97781 0.86833 0.94546 1.67639 1.06994 1.25821 1.16011 1.19240 0.92317 0.88134 0.93846 1.67442 1.07412 1.23279 1.16358 1.21168 0.83940 0.97037 0.94192 1.44018 1.02636 1.64877 1.19007 1.19059 0.95328 1.37274 0.85770 0.91635 1.25060 0.97688 0.99494 0.97000 1.69974 1.23562 1.44309 1.16596 0.86444 0.79613 0.79933 0.81713 1.21400 1.21645 1.20745 0.92879 0.94442 0.92097 0.92804 0.92343 0.92952 0.90971 0.75436 0.82526 0.83417 0.83984 0.83973 0.81597 0.88709 0.95403 0.93752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.62 7.96 37.16 0.30 -2.32 16 2 C 0.17 3.43 3.50 -67.60 -0.24 3.20 16 3 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 4 C -0.13 -2.28 5.21 -26.61 -0.14 -2.42 16 5 C -0.12 -1.96 5.59 -26.69 -0.15 -2.11 16 6 C 0.11 2.25 2.81 -67.81 -0.19 2.06 16 7 H 0.08 1.53 7.58 -51.93 -0.39 1.14 16 8 N -0.67 -13.22 4.90 -54.48 -0.27 -13.49 16 9 C 0.56 11.35 7.78 -12.10 -0.09 11.26 16 10 O -0.53 -11.87 15.94 5.37 0.09 -11.78 16 11 C 0.16 2.83 6.75 -82.96 -0.56 2.27 16 12 C -0.13 -1.83 9.54 -39.44 -0.38 -2.20 16 13 C -0.05 -0.59 9.89 -39.28 -0.39 -0.98 16 14 C -0.15 -1.84 5.75 -106.68 -0.61 -2.45 16 15 C -0.05 -0.40 9.90 -39.24 -0.39 -0.79 16 16 C -0.18 -1.37 10.04 -39.73 -0.40 -1.77 16 17 C 0.15 1.54 11.14 -17.46 -0.19 1.35 16 18 N -0.46 -6.80 10.43 -12.59 -0.13 -6.93 16 19 C 0.30 4.86 7.62 -157.90 -1.20 3.66 16 20 N -0.43 -7.82 9.56 -9.19 -0.09 -7.91 16 21 C 0.16 3.97 4.87 -3.71 -0.02 3.95 16 22 N -0.58 -14.34 2.90 -164.77 -0.48 -14.81 16 23 C -0.24 -6.69 8.54 -15.06 -0.13 -6.82 16 24 H 0.07 1.79 6.27 -52.49 -0.33 1.46 16 25 C 0.01 0.18 4.97 -17.43 -0.09 0.09 16 26 N -0.90 -26.78 11.21 55.49 0.62 -26.16 16 27 Si 0.89 22.70 29.58 -169.99 -5.03 17.68 16 28 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 29 H -0.29 -7.47 7.11 56.52 0.40 -7.06 16 30 H -0.28 -7.16 7.11 56.52 0.40 -6.76 16 31 H 0.05 1.05 7.44 -51.93 -0.39 0.67 16 32 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.06 1.27 7.63 -51.93 -0.40 0.87 16 34 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.06 1.05 6.41 -51.93 -0.33 0.71 16 36 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 37 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 38 H 0.41 7.90 6.08 -40.82 -0.25 7.65 16 39 H 0.16 2.08 7.60 -52.48 -0.40 1.68 16 40 H 0.15 1.06 8.06 -52.49 -0.42 0.64 16 41 H 0.14 0.74 8.06 -52.49 -0.42 0.32 16 42 H 0.14 0.57 8.06 -52.49 -0.42 0.15 16 43 H 0.17 1.05 8.06 -52.48 -0.42 0.63 16 44 H 0.09 2.70 6.17 -51.93 -0.32 2.37 16 45 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 46 H 0.25 7.36 8.31 -40.82 -0.34 7.02 16 LS Contribution 372.25 15.07 5.61 5.61 Total: -1.00 -34.41 372.25 -10.71 -45.12 By element: Atomic # 1 Polarization: 12.87 SS G_CDS: -6.17 Total: 6.70 kcal Atomic # 6 Polarization: 10.84 SS G_CDS: -4.87 Total: 5.97 kcal Atomic # 7 Polarization: -68.95 SS G_CDS: -0.34 Total: -69.30 kcal Atomic # 8 Polarization: -11.87 SS G_CDS: 0.09 Total: -11.78 kcal Atomic # 14 Polarization: 22.70 SS G_CDS: -5.03 Total: 17.68 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -34.41 -10.71 -45.12 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071518052.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.187 kcal (2) G-P(sol) polarization free energy of solvation -34.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.121 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds