Wall clock time and date at job start Sat Apr 11 2020 06:05:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.58629 * 2 1 4 4 C 1.53199 * 109.58227 * 120.42273 * 2 1 3 5 5 C 1.53044 * 109.30985 * 174.42209 * 4 2 1 6 6 C 1.53042 * 109.54114 * 298.63962 * 5 4 2 7 7 H 1.08995 * 109.49611 * 181.31881 * 6 5 4 8 8 N 1.46496 * 109.51870 * 301.39662 * 6 5 4 9 9 C 1.34781 * 119.99938 * 204.85583 * 8 6 5 10 10 O 1.21490 * 119.99738 * 359.97438 * 9 8 6 11 11 C 1.48352 * 120.00138 * 180.02562 * 9 8 6 12 12 C 1.40172 * 119.20250 * 179.73063 * 11 9 8 13 13 C 1.36615 * 119.70692 * 179.71784 * 12 11 9 14 14 C 1.40598 * 118.20850 * 0.53742 * 13 12 11 15 15 C 1.40732 * 121.37609 * 179.75384 * 14 13 12 16 16 C 1.36589 * 118.13308 * 179.97438 * 15 14 13 17 17 C 1.39432 * 119.84485 * 359.97438 * 16 15 14 18 18 N 1.31014 * 121.84009 * 0.02562 * 17 16 15 19 19 C 1.33861 * 121.42424 * 359.97438 * 18 17 16 20 20 N 1.31881 * 119.20267 * 359.97438 * 11 9 8 21 21 C 1.53190 * 109.31227 * 61.36030 * 6 5 4 22 22 N 1.46916 * 109.58944 * 239.71063 * 2 1 3 23 23 C 1.36935 * 120.63190 * 6.63012 * 22 2 1 24 24 H 1.07999 * 120.00320 * 329.22515 * 23 22 2 25 25 C 1.38822 * 120.00123 * 149.22234 * 23 22 2 26 26 N 1.31620 * 119.99894 * 345.91144 * 25 23 22 27 27 Si 1.86801 * 119.99668 * 165.91084 * 25 23 22 28 28 H 1.48506 * 109.46773 * 90.00394 * 27 25 23 29 29 H 1.48501 * 109.46790 * 210.00013 * 27 25 23 30 30 H 1.48498 * 109.47308 * 330.00413 * 27 25 23 31 31 H 1.08998 * 109.46787 * 180.28463 * 1 2 3 32 32 H 1.08997 * 109.47490 * 300.28455 * 1 2 3 33 33 H 1.08997 * 109.46927 * 60.29105 * 1 2 3 34 34 H 1.09001 * 109.50048 * 294.37654 * 4 2 1 35 35 H 1.08998 * 109.49708 * 54.47428 * 4 2 1 36 36 H 1.09000 * 109.46212 * 178.61275 * 5 4 2 37 37 H 1.09003 * 109.46176 * 58.65780 * 5 4 2 38 38 H 0.97001 * 120.00927 * 24.85456 * 8 6 5 39 39 H 1.08003 * 120.14350 * 359.97438 * 12 11 9 40 40 H 1.08001 * 120.90062 * 180.24066 * 13 12 11 41 41 H 1.08001 * 120.93687 * 359.97159 * 15 14 13 42 42 H 1.07998 * 120.07440 * 180.02562 * 16 15 14 43 43 H 1.08003 * 119.07954 * 179.97438 * 17 16 15 44 44 H 1.09000 * 109.58135 * 185.57547 * 21 6 5 45 45 H 1.09006 * 109.58248 * 65.15897 * 21 6 5 46 46 H 0.96997 * 119.99522 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0435 -0.7309 1.2446 5 6 3.5675 -0.8494 1.1693 6 6 3.9570 -1.6656 -0.0654 7 1 5.0412 -1.7694 -0.1056 8 7 3.3412 -2.9927 0.0109 9 6 3.8966 -4.0319 -0.6434 10 8 4.9076 -3.8680 -1.2967 11 6 3.2727 -5.3757 -0.5666 12 6 3.8612 -6.4435 -1.2582 13 6 3.2986 -7.6865 -1.1900 14 6 2.1284 -7.8454 -0.4270 15 6 1.4905 -9.0949 -0.3152 16 6 0.3576 -9.1740 0.4436 17 6 -0.1324 -8.0342 1.0799 18 7 0.4643 -6.8727 0.9734 19 6 1.5780 -6.7244 0.2458 20 7 2.1751 -5.5357 0.1468 21 6 3.4651 -0.9453 -1.3247 22 7 2.0226 -0.6981 -1.1952 23 6 1.1539 -1.1101 -2.1702 24 1 0.1442 -1.3918 -1.9101 25 6 1.5709 -1.1656 -3.4932 26 7 2.6876 -0.5712 -3.8567 27 14 0.5473 -2.0841 -4.7573 28 1 -0.4376 -1.1545 -5.3666 29 1 1.4371 -2.6258 -5.8156 30 1 -0.1714 -3.2020 -4.0947 31 1 -0.3633 -1.0276 0.0051 32 1 -0.3634 0.5182 0.8874 33 1 -0.3633 0.5093 -0.8926 34 1 1.7659 -0.1694 2.1367 35 1 1.6029 -1.7269 1.2893 36 1 3.9378 -1.3473 2.0654 37 1 4.0061 0.1460 1.0997 38 1 2.5337 -3.1236 0.5323 39 1 4.7578 -6.2850 -1.8391 40 1 3.7380 -8.5236 -1.7121 41 1 1.8857 -9.9667 -0.8154 42 1 -0.1569 -10.1175 0.5512 43 1 -1.0294 -8.1108 1.6766 44 1 3.6520 -1.5691 -2.1988 45 1 3.9904 0.0038 -1.4315 46 1 2.9791 -0.6104 -4.7810 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071518052.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:31 Heat of formation + Delta-G solvation = 38.569292 kcal Electronic energy + Delta-G solvation = -30166.463662 eV Core-core repulsion = 26248.942469 eV Total energy + Delta-G solvation = -3917.521192 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.32649 -41.02077 -39.42926 -38.39194 -35.89769 -35.16779 -34.52334 -32.68507 -32.06623 -31.81756 -31.49269 -27.99775 -27.09003 -26.38907 -25.26788 -23.93014 -23.65232 -22.72235 -21.98769 -20.40357 -19.95186 -19.31126 -18.29520 -18.08427 -17.42392 -17.03691 -16.71479 -16.40048 -15.90072 -15.84857 -15.63265 -15.49252 -15.22529 -15.10820 -14.81742 -14.48895 -14.41949 -14.04858 -13.98774 -13.70691 -13.21471 -13.00572 -12.91546 -12.87070 -12.66185 -12.58621 -12.46242 -12.17874 -12.14920 -12.13061 -11.86569 -11.61235 -11.28647 -11.13396 -11.07836 -10.55537 -10.14393 -10.10405 -9.99444 -9.86711 -8.56398 -7.84598 -5.30415 -0.98743 -0.54809 0.84227 1.31404 1.34171 1.36309 1.43941 2.01249 2.23044 2.46121 2.59673 3.06646 3.30390 3.37045 3.50471 3.61771 3.62303 3.77581 3.93411 3.99078 4.06341 4.08186 4.16152 4.24955 4.46158 4.46316 4.60479 4.65186 4.70235 4.78853 4.81722 4.93078 4.93866 5.00633 5.05598 5.07685 5.12405 5.21024 5.23003 5.29923 5.52487 5.57448 5.60625 5.63913 5.70757 5.71236 6.16468 6.43383 6.55770 7.03588 7.17106 7.18093 7.90762 8.41840 9.20504 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.010360 B = 0.004180 C = 0.003904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2701.980787 B = 6697.623294 C = 7169.806685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.156 3.844 3 H 0.022 0.978 4 C -0.121 4.121 5 C -0.110 4.110 6 C 0.121 3.879 7 H 0.075 0.925 8 N -0.671 5.671 9 C 0.556 3.444 10 O -0.568 6.568 11 C 0.128 3.872 12 C -0.150 4.150 13 C -0.025 4.025 14 C -0.156 4.156 15 C -0.040 4.040 16 C -0.161 4.161 17 C 0.158 3.842 18 N -0.510 5.510 19 C 0.269 3.731 20 N -0.466 5.466 21 C 0.174 3.826 22 N -0.596 5.596 23 C -0.237 4.237 24 H 0.065 0.935 25 C -0.050 4.050 26 N -0.932 5.932 27 Si 0.947 3.053 28 H -0.278 1.278 29 H -0.297 1.297 30 H -0.281 1.281 31 H 0.042 0.958 32 H 0.076 0.924 33 H 0.037 0.963 34 H 0.092 0.908 35 H 0.050 0.950 36 H 0.082 0.918 37 H 0.082 0.918 38 H 0.410 0.590 39 H 0.157 0.843 40 H 0.199 0.801 41 H 0.189 0.811 42 H 0.192 0.808 43 H 0.200 0.800 44 H 0.047 0.953 45 H 0.007 0.993 46 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.561 -19.760 12.622 23.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.051 3.949 3 H 0.039 0.961 4 C -0.160 4.160 5 C -0.147 4.147 6 C 0.015 3.985 7 H 0.093 0.907 8 N -0.320 5.320 9 C 0.340 3.660 10 O -0.447 6.447 11 C -0.028 4.028 12 C -0.171 4.171 13 C -0.051 4.051 14 C -0.161 4.161 15 C -0.067 4.067 16 C -0.181 4.181 17 C -0.018 4.018 18 N -0.221 5.221 19 C 0.031 3.969 20 N -0.179 5.179 21 C 0.047 3.953 22 N -0.319 5.319 23 C -0.367 4.367 24 H 0.082 0.918 25 C -0.245 4.245 26 N -0.579 5.579 27 Si 0.776 3.224 28 H -0.205 1.205 29 H -0.223 1.223 30 H -0.207 1.207 31 H 0.061 0.939 32 H 0.095 0.905 33 H 0.056 0.944 34 H 0.110 0.890 35 H 0.069 0.931 36 H 0.101 0.899 37 H 0.101 0.899 38 H 0.247 0.753 39 H 0.175 0.825 40 H 0.216 0.784 41 H 0.206 0.794 42 H 0.210 0.790 43 H 0.217 0.783 44 H 0.065 0.935 45 H 0.024 0.976 46 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -2.486 -18.041 12.897 22.316 hybrid contribution 0.058 -1.077 -1.942 2.222 sum -2.427 -19.118 10.954 22.167 Atomic orbital electron populations 1.21712 0.95027 1.00852 1.00901 1.20749 0.93981 0.93380 0.86800 0.96052 1.21967 0.95063 1.00572 0.98445 1.21669 0.97030 1.00216 0.95829 1.21707 0.96733 0.81867 0.98157 0.90669 1.45758 1.29304 1.07877 1.49048 1.18269 0.83757 0.84404 0.79524 1.90717 1.26403 1.84974 1.42645 1.21375 0.91660 0.94846 0.94895 1.21969 1.02501 0.92725 0.99926 1.21953 0.91782 0.97755 0.93659 1.20057 0.98657 0.96867 1.00534 1.22024 0.93861 0.95547 0.95224 1.22563 0.96954 1.01643 0.96894 1.23926 0.97905 0.86327 0.93668 1.67611 1.07843 1.28685 1.17917 1.19552 0.93315 0.88597 0.95480 1.67216 1.07883 1.25554 1.17287 1.20847 0.84139 0.95530 0.94784 1.44218 1.02338 1.65592 1.19787 1.19282 0.95465 1.35641 0.86361 0.91769 1.25697 0.98926 1.01044 0.98817 1.70132 1.25223 1.46306 1.16231 0.85580 0.78298 0.78898 0.79615 1.20481 1.22323 1.20703 0.93925 0.90476 0.94388 0.89003 0.93086 0.89930 0.89908 0.75263 0.82511 0.78398 0.79373 0.79048 0.78333 0.93463 0.97556 0.94617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.83 7.96 71.98 0.57 -4.25 16 2 C 0.16 6.42 3.50 44.98 0.16 6.57 16 3 H 0.02 0.91 8.14 -2.39 -0.02 0.89 16 4 C -0.12 -3.99 5.21 30.68 0.16 -3.83 16 5 C -0.11 -3.53 5.59 30.62 0.17 -3.36 16 6 C 0.12 5.00 2.81 45.07 0.13 5.12 16 7 H 0.08 3.12 7.58 -2.39 -0.02 3.10 16 8 N -0.67 -27.86 4.90 -444.56 -2.18 -30.04 16 9 C 0.56 24.09 7.78 86.94 0.68 24.76 16 10 O -0.57 -27.28 15.94 -3.69 -0.06 -27.34 16 11 C 0.13 4.81 6.75 42.30 0.29 5.09 16 12 C -0.15 -4.43 9.54 22.36 0.21 -4.22 16 13 C -0.03 -0.52 9.89 22.47 0.22 -0.30 16 14 C -0.16 -3.54 5.75 -21.20 -0.12 -3.67 16 15 C -0.04 -0.50 9.90 22.49 0.22 -0.27 16 16 C -0.16 -1.60 10.04 22.17 0.22 -1.38 16 17 C 0.16 2.64 11.14 85.10 0.95 3.59 16 18 N -0.51 -14.82 10.43 -193.75 -2.02 -16.84 16 19 C 0.27 8.59 7.62 135.12 1.03 9.62 16 20 N -0.47 -17.65 9.56 -182.98 -1.75 -19.39 16 21 C 0.17 8.98 4.87 86.36 0.42 9.40 16 22 N -0.60 -30.47 2.90 -675.23 -1.96 -32.43 16 23 C -0.24 -13.47 8.54 84.04 0.72 -12.75 16 24 H 0.06 3.62 6.27 -2.91 -0.02 3.60 16 25 C -0.05 -2.96 4.97 84.86 0.42 -2.54 16 26 N -0.93 -58.68 11.21 21.65 0.24 -58.44 16 27 Si 0.95 48.58 29.58 68.60 2.03 50.60 16 28 H -0.28 -13.75 7.11 99.48 0.71 -13.04 16 29 H -0.30 -15.39 7.11 99.48 0.71 -14.68 16 30 H -0.28 -14.22 7.11 99.48 0.71 -13.52 16 31 H 0.04 1.68 7.44 -2.39 -0.02 1.66 16 32 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 33 H 0.04 1.58 7.63 -2.39 -0.02 1.56 16 34 H 0.09 2.39 8.14 -2.39 -0.02 2.37 16 35 H 0.05 1.78 6.41 -2.39 -0.02 1.76 16 36 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 37 H 0.08 2.52 8.14 -2.39 -0.02 2.50 16 38 H 0.41 16.60 6.08 -92.71 -0.56 16.04 16 39 H 0.16 4.42 7.60 -2.91 -0.02 4.39 16 40 H 0.20 1.91 8.06 -2.91 -0.02 1.88 16 41 H 0.19 0.57 8.06 -2.91 -0.02 0.55 16 42 H 0.19 0.07 8.06 -2.91 -0.02 0.05 16 43 H 0.20 1.72 8.06 -2.91 -0.02 1.70 16 44 H 0.05 2.89 6.17 -2.39 -0.01 2.88 16 45 H 0.01 0.35 8.14 -2.38 -0.02 0.33 16 46 H 0.24 15.13 8.31 -92.71 -0.77 14.36 16 Total: -1.00 -84.61 372.25 1.20 -83.41 By element: Atomic # 1 Polarization: 22.42 SS G_CDS: 0.45 Total: 22.87 kcal Atomic # 6 Polarization: 21.15 SS G_CDS: 6.45 Total: 27.59 kcal Atomic # 7 Polarization: -149.48 SS G_CDS: -7.67 Total: -157.14 kcal Atomic # 8 Polarization: -27.28 SS G_CDS: -0.06 Total: -27.34 kcal Atomic # 14 Polarization: 48.58 SS G_CDS: 2.03 Total: 50.60 kcal Total: -84.61 1.20 -83.41 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071518052.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.978 kcal (2) G-P(sol) polarization free energy of solvation -84.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.409 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds