Wall clock time and date at job start Sat Apr 11 2020 06:05:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.58673 * 2 1 4 4 C 1.53191 * 109.58229 * 120.28336 * 2 1 3 5 5 C 1.53041 * 109.31394 * 174.56566 * 4 2 1 6 6 C 1.53040 * 109.53557 * 298.63509 * 5 4 2 7 7 H 1.09000 * 109.49826 * 301.40916 * 6 5 4 8 8 N 1.46498 * 109.49601 * 181.31313 * 6 5 4 9 9 C 1.34779 * 120.00097 * 155.00026 * 8 6 5 10 10 O 1.21495 * 119.99416 * 0.02562 * 9 8 6 11 11 C 1.48350 * 120.00041 * 180.02562 * 9 8 6 12 12 C 1.40180 * 119.20100 * 179.97438 * 11 9 8 13 13 C 1.36618 * 119.70477 * 179.97438 * 12 11 9 14 14 C 1.40593 * 118.20980 * 0.02562 * 13 12 11 15 15 C 1.40740 * 121.37836 * 179.97438 * 14 13 12 16 16 C 1.36589 * 118.12941 * 180.02562 * 15 14 13 17 17 C 1.39419 * 119.85182 * 359.97438 * 16 15 14 18 18 N 1.31019 * 121.83954 * 0.02562 * 17 16 15 19 19 C 1.33857 * 121.42134 * 359.97438 * 18 17 16 20 20 N 1.31873 * 119.20409 * 359.73023 * 11 9 8 21 21 C 1.53197 * 109.31384 * 61.36343 * 6 5 4 22 22 N 1.46921 * 109.70627 * 239.64259 * 2 1 3 23 23 C 1.36944 * 120.63036 * 6.51200 * 22 2 1 24 24 H 1.07995 * 119.99899 * 330.20373 * 23 22 2 25 25 C 1.38810 * 119.99902 * 150.20045 * 23 22 2 26 26 N 1.31620 * 119.99942 * 344.48280 * 25 23 22 27 27 Si 1.86795 * 119.99872 * 164.47877 * 25 23 22 28 28 H 1.48509 * 109.47049 * 90.00392 * 27 25 23 29 29 H 1.48497 * 109.47148 * 209.99933 * 27 25 23 30 30 H 1.48495 * 109.47222 * 330.00437 * 27 25 23 31 31 H 1.09000 * 109.47456 * 300.00245 * 1 2 3 32 32 H 1.09001 * 109.46694 * 60.00114 * 1 2 3 33 33 H 1.09003 * 109.47396 * 179.97438 * 1 2 3 34 34 H 1.09000 * 109.49925 * 294.51526 * 4 2 1 35 35 H 1.09002 * 109.49898 * 54.61022 * 4 2 1 36 36 H 1.09006 * 109.45921 * 58.65326 * 5 4 2 37 37 H 1.08993 * 109.46150 * 178.61238 * 5 4 2 38 38 H 0.96998 * 120.00367 * 334.99799 * 8 6 5 39 39 H 1.07995 * 120.14654 * 359.97438 * 12 11 9 40 40 H 1.08001 * 120.89300 * 179.97438 * 13 12 11 41 41 H 1.08001 * 120.93453 * 359.97438 * 15 14 13 42 42 H 1.08002 * 120.06945 * 180.02562 * 16 15 14 43 43 H 1.08002 * 119.08293 * 179.97438 * 17 16 15 44 44 H 1.08996 * 109.58698 * 65.15033 * 21 6 5 45 45 H 1.08994 * 109.58664 * 185.43222 * 21 6 5 46 46 H 0.97005 * 119.99905 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0434 -0.7278 1.2464 5 6 3.5677 -0.8434 1.1731 6 6 3.9603 -1.6609 -0.0597 7 1 3.5036 -2.6489 -0.0016 8 7 5.4179 -1.7976 -0.1119 9 6 5.9743 -2.8396 -0.7609 10 8 5.2669 -3.6652 -1.3031 11 6 7.4504 -2.9783 -0.8133 12 6 8.0112 -4.0688 -1.4924 13 6 9.3693 -4.2064 -1.5475 14 6 10.1620 -3.2350 -0.9113 15 6 11.5672 -3.3116 -0.9258 16 6 12.2721 -2.3322 -0.2860 17 6 11.5949 -1.2961 0.3557 18 7 10.2865 -1.2283 0.3671 19 6 9.5345 -2.1544 -0.2400 20 7 8.2033 -2.0701 -0.2239 21 6 3.4685 -0.9436 -1.3209 22 7 2.0254 -0.6990 -1.1935 23 6 1.1585 -1.1152 -2.1685 24 1 0.1448 -1.3840 -1.9108 25 6 1.5827 -1.1915 -3.4880 26 7 2.6926 -0.5886 -3.8583 27 14 0.5786 -2.1499 -4.7379 28 1 -0.4165 -1.2471 -5.3706 29 1 1.4812 -2.7000 -5.7810 30 1 -0.1273 -3.2643 -4.0561 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3634 -1.0277 -0.0005 34 1 1.7637 -0.1655 2.1372 35 1 1.6047 -1.7246 1.2922 36 1 4.0045 0.1528 1.1023 37 1 3.9379 -1.3391 2.0704 38 1 5.9827 -1.1382 0.3206 39 1 7.3724 -4.7970 -1.9700 40 1 9.8218 -5.0393 -2.0651 41 1 12.0739 -4.1224 -1.4281 42 1 13.3518 -2.3599 -0.2779 43 1 12.1647 -0.5285 0.8582 44 1 3.9920 0.0063 -1.4286 45 1 3.6599 -1.5673 -2.1941 46 1 2.9889 -0.6416 -4.7805 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071518055.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:35 Heat of formation + Delta-G solvation = 35.573814 kcal Electronic energy + Delta-G solvation = -29138.642323 eV Core-core repulsion = 25220.991237 eV Total energy + Delta-G solvation = -3917.651086 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.35667 -41.00389 -39.44470 -38.46267 -36.14798 -35.18751 -34.66129 -32.69661 -32.08708 -31.86109 -31.51698 -27.95448 -27.16566 -26.22627 -25.24271 -24.05558 -23.65162 -22.66473 -21.72806 -21.08076 -19.88667 -19.20451 -18.36919 -18.18796 -17.41798 -17.15832 -16.80322 -16.48083 -15.86884 -15.83863 -15.62424 -15.46211 -15.23908 -15.11967 -14.99929 -14.60643 -14.37559 -14.15012 -13.99230 -13.52740 -13.27434 -13.08891 -12.88311 -12.78694 -12.70660 -12.55330 -12.32314 -12.16755 -12.14880 -12.06134 -11.88713 -11.68046 -11.48583 -11.19126 -11.10288 -10.54854 -10.23663 -10.13532 -10.05224 -9.90735 -8.63450 -7.85690 -5.32792 -1.02441 -0.56684 0.81716 1.27031 1.41119 1.45072 1.53334 1.90076 2.13162 2.48629 2.54467 3.03758 3.30141 3.35189 3.42422 3.60416 3.66950 3.76971 3.90691 3.93621 4.04347 4.05877 4.21380 4.24773 4.35904 4.45860 4.55904 4.64204 4.68912 4.76820 4.81692 4.86773 4.93782 4.99345 5.04598 5.12279 5.15588 5.19163 5.25335 5.27801 5.37548 5.54135 5.58672 5.59997 5.69953 5.74523 6.10787 6.39437 6.47905 6.98712 7.09094 7.15678 7.87884 8.39067 9.20108 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.014789 B = 0.002912 C = 0.002599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1892.820158 B = 9612.192133 C =10770.014263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.152 3.848 3 H 0.019 0.981 4 C -0.115 4.115 5 C -0.109 4.109 6 C 0.129 3.871 7 H 0.062 0.938 8 N -0.689 5.689 9 C 0.557 3.443 10 O -0.562 6.562 11 C 0.130 3.870 12 C -0.149 4.149 13 C -0.023 4.023 14 C -0.154 4.154 15 C -0.040 4.040 16 C -0.160 4.160 17 C 0.160 3.840 18 N -0.510 5.510 19 C 0.269 3.731 20 N -0.465 5.465 21 C 0.183 3.817 22 N -0.601 5.601 23 C -0.251 4.251 24 H 0.077 0.923 25 C -0.056 4.056 26 N -0.936 5.936 27 Si 0.961 3.039 28 H -0.279 1.279 29 H -0.299 1.299 30 H -0.270 1.270 31 H 0.079 0.921 32 H 0.038 0.962 33 H 0.048 0.952 34 H 0.097 0.903 35 H 0.057 0.943 36 H 0.067 0.933 37 H 0.083 0.917 38 H 0.414 0.586 39 H 0.155 0.845 40 H 0.198 0.802 41 H 0.188 0.812 42 H 0.192 0.808 43 H 0.201 0.799 44 H -0.008 1.008 45 H 0.044 0.956 46 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.134 -5.707 11.006 25.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.047 3.953 3 H 0.037 0.963 4 C -0.155 4.155 5 C -0.147 4.147 6 C 0.023 3.977 7 H 0.080 0.920 8 N -0.339 5.339 9 C 0.342 3.658 10 O -0.440 6.440 11 C -0.025 4.025 12 C -0.170 4.170 13 C -0.049 4.049 14 C -0.159 4.159 15 C -0.066 4.066 16 C -0.180 4.180 17 C -0.016 4.016 18 N -0.220 5.220 19 C 0.031 3.969 20 N -0.179 5.179 21 C 0.056 3.944 22 N -0.325 5.325 23 C -0.381 4.381 24 H 0.095 0.905 25 C -0.250 4.250 26 N -0.582 5.582 27 Si 0.789 3.211 28 H -0.205 1.205 29 H -0.226 1.226 30 H -0.195 1.195 31 H 0.098 0.902 32 H 0.057 0.943 33 H 0.067 0.933 34 H 0.115 0.885 35 H 0.076 0.924 36 H 0.086 0.914 37 H 0.102 0.898 38 H 0.251 0.749 39 H 0.173 0.827 40 H 0.215 0.785 41 H 0.206 0.794 42 H 0.209 0.791 43 H 0.217 0.783 44 H 0.010 0.990 45 H 0.062 0.938 46 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 20.731 -4.853 11.357 24.131 hybrid contribution 0.251 -1.089 -1.867 2.176 sum 20.981 -5.941 9.490 23.782 Atomic orbital electron populations 1.21720 0.94385 1.01308 1.01109 1.20822 0.94527 0.93275 0.86719 0.96343 1.21946 0.93925 1.01166 0.98431 1.21662 0.97539 0.99759 0.95761 1.21686 0.78237 0.99730 0.98058 0.92022 1.45884 1.08154 1.26225 1.53659 1.18373 0.86905 0.81855 0.78678 1.90786 1.62910 1.43720 1.46542 1.21229 0.92833 0.92631 0.95828 1.21956 0.97444 0.98168 0.99478 1.21951 0.91585 0.97654 0.93687 1.20051 0.97842 0.97128 1.00878 1.22030 0.89923 0.99539 0.95145 1.22569 1.04238 0.94015 0.97132 1.23931 0.88191 0.97232 0.92261 1.67623 1.08882 1.26296 1.19184 1.19531 0.89475 0.92013 0.95910 1.67189 1.06366 1.26498 1.17834 1.20696 0.83999 0.95064 0.94661 1.44302 1.02266 1.65615 1.20360 1.19489 0.95597 1.36518 0.86537 0.90529 1.25877 0.99131 1.00911 0.99131 1.70193 1.26016 1.45680 1.16354 0.85370 0.77862 0.78987 0.78890 1.20543 1.22572 1.19456 0.90209 0.94280 0.93292 0.88484 0.92442 0.91385 0.89836 0.74928 0.82692 0.78458 0.79439 0.79103 0.78258 0.98970 0.93772 0.94677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.75 7.96 71.98 0.57 -4.17 16 2 C 0.15 6.35 3.49 44.98 0.16 6.50 16 3 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 4 C -0.12 -3.84 5.37 30.67 0.16 -3.68 16 5 C -0.11 -3.67 5.35 30.62 0.16 -3.51 16 6 C 0.13 5.51 2.60 45.07 0.12 5.63 16 7 H 0.06 2.93 7.58 -2.39 -0.02 2.91 16 8 N -0.69 -27.19 5.07 -444.54 -2.25 -29.45 16 9 C 0.56 23.05 7.78 86.94 0.68 23.73 16 10 O -0.56 -27.13 15.94 -3.70 -0.06 -27.19 16 11 C 0.13 4.47 6.75 42.30 0.29 4.76 16 12 C -0.15 -4.02 9.54 22.36 0.21 -3.81 16 13 C -0.02 -0.40 9.89 22.47 0.22 -0.18 16 14 C -0.15 -3.03 5.75 -21.20 -0.12 -3.16 16 15 C -0.04 -0.39 9.90 22.50 0.22 -0.16 16 16 C -0.16 -1.17 10.04 22.17 0.22 -0.95 16 17 C 0.16 2.19 11.14 85.10 0.95 3.14 16 18 N -0.51 -13.00 10.43 -193.76 -2.02 -15.02 16 19 C 0.27 7.64 7.62 135.11 1.03 8.66 16 20 N -0.47 -15.76 9.56 -182.97 -1.75 -17.51 16 21 C 0.18 9.78 4.86 86.36 0.42 10.20 16 22 N -0.60 -31.77 2.99 -675.26 -2.02 -33.79 16 23 C -0.25 -14.42 8.58 84.03 0.72 -13.70 16 24 H 0.08 4.20 6.24 -2.91 -0.02 4.18 16 25 C -0.06 -3.33 4.94 84.86 0.42 -2.91 16 26 N -0.94 -59.88 11.23 21.65 0.24 -59.64 16 27 Si 0.96 48.29 29.58 68.60 2.03 50.32 16 28 H -0.28 -13.47 7.11 99.48 0.71 -12.77 16 29 H -0.30 -15.32 7.11 99.48 0.71 -14.61 16 30 H -0.27 -12.99 7.11 99.48 0.71 -12.29 16 31 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 32 H 0.04 1.60 7.66 -2.39 -0.02 1.58 16 33 H 0.05 1.84 7.42 -2.39 -0.02 1.83 16 34 H 0.10 2.50 8.14 -2.39 -0.02 2.48 16 35 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 36 H 0.07 2.22 8.14 -2.38 -0.02 2.20 16 37 H 0.08 2.35 8.14 -2.39 -0.02 2.33 16 38 H 0.41 14.73 7.91 -92.71 -0.73 13.99 16 39 H 0.16 4.09 7.60 -2.91 -0.02 4.07 16 40 H 0.20 1.47 8.06 -2.91 -0.02 1.45 16 41 H 0.19 0.15 8.06 -2.91 -0.02 0.13 16 42 H 0.19 -0.37 8.06 -2.91 -0.02 -0.39 16 43 H 0.20 1.15 8.06 -2.91 -0.02 1.12 16 44 H -0.01 -0.44 8.14 -2.39 -0.02 -0.46 16 45 H 0.04 2.78 6.15 -2.39 -0.01 2.77 16 46 H 0.24 15.29 8.31 -92.70 -0.77 14.52 16 Total: -1.00 -86.69 375.76 0.89 -85.80 By element: Atomic # 1 Polarization: 19.80 SS G_CDS: 0.28 Total: 20.08 kcal Atomic # 6 Polarization: 19.96 SS G_CDS: 6.43 Total: 26.39 kcal Atomic # 7 Polarization: -147.61 SS G_CDS: -7.80 Total: -155.40 kcal Atomic # 8 Polarization: -27.13 SS G_CDS: -0.06 Total: -27.19 kcal Atomic # 14 Polarization: 48.29 SS G_CDS: 2.03 Total: 50.32 kcal Total: -86.69 0.89 -85.80 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071518055.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.378 kcal (2) G-P(sol) polarization free energy of solvation -86.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.805 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds