Wall clock time and date at job start Sat Apr 11 2020 06:05:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08994 * 109.70929 * 2 1 4 4 C 1.53201 * 109.58651 * 239.64084 * 2 1 3 5 5 C 1.53037 * 109.31079 * 185.58044 * 4 2 1 6 6 C 1.53039 * 109.52790 * 61.37569 * 5 4 2 7 7 H 1.08995 * 109.50139 * 178.67329 * 6 5 4 8 8 N 1.46504 * 109.49713 * 58.57672 * 6 5 4 9 9 C 1.34782 * 119.99966 * 155.00207 * 8 6 5 10 10 O 1.21491 * 119.99793 * 359.97438 * 9 8 6 11 11 C 1.48349 * 119.99969 * 179.97438 * 9 8 6 12 12 C 1.40173 * 119.20058 * 179.73321 * 11 9 8 13 13 C 1.36622 * 119.70219 * 179.72039 * 12 11 9 14 14 C 1.40594 * 118.21127 * 0.53320 * 13 12 11 15 15 C 1.40736 * 121.37829 * 179.75133 * 14 13 12 16 16 C 1.36579 * 118.13249 * 179.97438 * 15 14 13 17 17 C 1.39433 * 119.85063 * 0.02562 * 16 15 14 18 18 N 1.31010 * 121.83788 * 359.97438 * 17 16 15 19 19 C 1.33866 * 121.42628 * 0.02562 * 18 17 16 20 20 N 1.31883 * 119.20118 * 359.97438 * 11 9 8 21 21 C 1.53196 * 109.31068 * 298.61222 * 6 5 4 22 22 N 1.46925 * 108.76744 * 54.65492 * 21 6 5 23 23 C 1.36936 * 120.62847 * 126.40238 * 22 21 6 24 24 H 1.07999 * 119.99943 * 221.18689 * 23 22 21 25 25 C 1.38809 * 120.00221 * 41.19610 * 23 22 21 26 26 N 1.31619 * 120.00188 * 214.87381 * 25 23 22 27 27 Si 1.86804 * 119.99836 * 34.86571 * 25 23 22 28 28 H 1.48497 * 109.46847 * 84.63186 * 27 25 23 29 29 H 1.48501 * 109.46931 * 204.62765 * 27 25 23 30 30 H 1.48491 * 109.47368 * 324.62976 * 27 25 23 31 31 H 1.09001 * 109.47571 * 180.35174 * 1 2 3 32 32 H 1.09000 * 109.46952 * 300.35733 * 1 2 3 33 33 H 1.09004 * 109.46442 * 60.35362 * 1 2 3 34 34 H 1.08999 * 109.49516 * 65.62700 * 4 2 1 35 35 H 1.08999 * 109.52307 * 305.54774 * 4 2 1 36 36 H 1.09005 * 109.45688 * 181.38602 * 5 4 2 37 37 H 1.08995 * 109.46377 * 301.35871 * 5 4 2 38 38 H 0.97000 * 120.00193 * 334.99735 * 8 6 5 39 39 H 1.07997 * 120.14800 * 359.97438 * 12 11 9 40 40 H 1.08007 * 120.89411 * 180.23762 * 13 12 11 41 41 H 1.07997 * 120.93181 * 359.97438 * 15 14 13 42 42 H 1.07999 * 120.07460 * 179.97438 * 16 15 14 43 43 H 1.08002 * 119.08022 * 180.02562 * 17 16 15 44 44 H 1.08994 * 109.59554 * 294.86423 * 21 6 5 45 45 H 1.09004 * 109.69952 * 174.50959 * 21 6 5 46 46 H 0.96996 * 120.00360 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8976 1.0261 0.0000 4 6 2.0436 -0.7295 -1.2454 5 6 3.5675 -0.8481 -1.1701 6 6 3.9565 -1.6661 0.0635 7 1 5.0407 -1.7702 0.1039 8 7 3.3398 -2.9926 -0.0150 9 6 3.8960 -4.0339 0.6354 10 8 4.9090 -3.8725 1.2864 11 6 3.2712 -5.3771 0.5564 12 6 3.8669 -6.4494 1.2348 13 6 3.2970 -7.6895 1.1738 14 6 2.1251 -7.8457 0.4129 15 6 1.4856 -9.0943 0.3000 16 6 0.3506 -9.1706 -0.4559 17 6 -0.1401 -8.0289 -1.0882 18 7 0.4580 -6.8682 -0.9807 19 6 1.5740 -6.7226 -0.2559 20 7 2.1714 -5.5344 -0.1543 21 6 3.4649 -0.9470 1.3238 22 7 2.0225 -0.6995 1.1945 23 6 1.1537 -1.1127 2.1690 24 1 0.2056 -1.5521 1.8962 25 6 1.4914 -0.9665 3.5074 26 7 1.1104 -1.8706 4.3848 27 14 2.4870 0.5132 4.0633 28 1 1.5753 1.6597 4.3071 29 1 3.2102 0.1805 5.3169 30 1 3.4666 0.8754 3.0078 31 1 -0.3634 -1.0276 0.0063 32 1 -0.3633 0.5194 0.8868 33 1 -0.3632 0.5084 -0.8932 34 1 1.7660 -0.1670 -2.1368 35 1 1.6030 -1.7254 -1.2919 36 1 3.9378 -1.3450 -2.0668 37 1 4.0062 0.1471 -1.0990 38 1 2.5312 -3.1216 -0.5349 39 1 4.7700 -6.2950 1.8065 40 1 3.7375 -8.5285 1.6921 41 1 1.8814 -9.9676 0.7970 42 1 -0.1652 -10.1132 -0.5642 43 1 -1.0389 -8.1032 -1.6825 44 1 3.9903 0.0018 1.4317 45 1 3.6520 -1.5698 2.1987 46 1 1.3467 -1.7687 5.3200 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071518057.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:40 Heat of formation + Delta-G solvation = 64.973061 kcal Electronic energy + Delta-G solvation = -30090.232033 eV Core-core repulsion = 26173.855794 eV Total energy + Delta-G solvation = -3916.376239 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.29420 -39.63996 -38.10929 -37.14511 -34.39581 -34.03189 -32.63243 -31.50709 -31.02877 -30.64093 -30.28423 -26.52270 -25.58655 -24.75427 -24.26069 -22.71552 -22.39124 -21.42253 -20.32401 -18.92275 -18.85456 -18.09590 -17.27005 -16.39349 -16.22528 -15.40573 -15.36774 -15.08163 -14.84417 -14.41831 -14.28301 -14.23012 -13.93480 -13.67448 -13.39276 -13.28760 -13.19517 -12.88516 -12.52079 -12.16563 -12.08256 -11.99222 -11.68193 -11.32911 -11.20833 -11.13588 -10.84829 -10.71552 -10.57328 -10.40661 -10.16591 -9.89230 -9.81810 -9.68612 -9.40796 -9.07324 -9.04653 -8.99668 -8.52834 -8.20392 -6.60227 -5.99849 -3.29113 -0.00451 0.42180 1.77490 2.39999 3.29684 3.44834 3.47251 3.57122 3.61323 3.71854 4.15119 4.26198 4.46674 4.52630 4.60866 4.65713 4.81387 4.95434 4.97771 5.16513 5.22432 5.26942 5.37560 5.43104 5.52952 5.53542 5.71312 5.71994 5.90185 5.99017 6.05810 6.06742 6.10870 6.25228 6.34860 6.38664 6.43926 6.47340 6.53866 6.64706 6.65491 6.96161 7.06759 7.09854 7.19749 7.24753 7.92789 8.10048 8.12913 8.51663 8.63121 9.08542 9.81073 10.29433 11.15715 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.012176 B = 0.003793 C = 0.003678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2299.142534 B = 7380.596638 C = 7611.705115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.163 3.837 3 H 0.026 0.974 4 C -0.133 4.133 5 C -0.118 4.118 6 C 0.122 3.878 7 H 0.081 0.919 8 N -0.673 5.673 9 C 0.568 3.432 10 O -0.538 6.538 11 C 0.160 3.840 12 C -0.126 4.126 13 C -0.051 4.051 14 C -0.145 4.145 15 C -0.046 4.046 16 C -0.178 4.178 17 C 0.155 3.845 18 N -0.456 5.456 19 C 0.304 3.696 20 N -0.431 5.431 21 C 0.133 3.867 22 N -0.590 5.590 23 C -0.269 4.269 24 H 0.075 0.925 25 C 0.051 3.949 26 N -0.879 5.879 27 Si 0.842 3.158 28 H -0.290 1.290 29 H -0.298 1.298 30 H -0.261 1.261 31 H 0.056 0.944 32 H 0.061 0.939 33 H 0.037 0.963 34 H 0.056 0.944 35 H 0.061 0.939 36 H 0.057 0.943 37 H 0.072 0.928 38 H 0.411 0.589 39 H 0.156 0.844 40 H 0.148 0.852 41 H 0.142 0.858 42 H 0.142 0.858 43 H 0.167 0.833 44 H 0.034 0.966 45 H 0.073 0.927 46 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.299 -13.711 -12.129 18.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.058 3.942 3 H 0.044 0.956 4 C -0.172 4.172 5 C -0.156 4.156 6 C 0.016 3.984 7 H 0.099 0.901 8 N -0.323 5.323 9 C 0.352 3.648 10 O -0.415 6.415 11 C 0.003 3.997 12 C -0.147 4.147 13 C -0.078 4.078 14 C -0.150 4.150 15 C -0.073 4.073 16 C -0.198 4.198 17 C -0.023 4.023 18 N -0.164 5.164 19 C 0.066 3.934 20 N -0.143 5.143 21 C 0.007 3.993 22 N -0.315 5.315 23 C -0.396 4.396 24 H 0.092 0.908 25 C -0.152 4.152 26 N -0.518 5.518 27 Si 0.669 3.331 28 H -0.217 1.217 29 H -0.225 1.225 30 H -0.186 1.186 31 H 0.075 0.925 32 H 0.080 0.920 33 H 0.056 0.944 34 H 0.075 0.925 35 H 0.080 0.920 36 H 0.075 0.925 37 H 0.091 0.909 38 H 0.249 0.751 39 H 0.174 0.826 40 H 0.166 0.834 41 H 0.160 0.840 42 H 0.160 0.840 43 H 0.184 0.816 44 H 0.051 0.949 45 H 0.091 0.909 46 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 2.295 -12.096 -12.354 17.441 hybrid contribution 0.664 -0.684 1.284 1.599 sum 2.959 -12.780 -11.069 17.164 Atomic orbital electron populations 1.21753 0.95436 1.01846 1.00035 1.20587 0.93567 0.93253 0.86841 0.95604 1.22067 0.94845 1.01312 0.98989 1.21685 0.97368 0.99954 0.96611 1.21663 0.97102 0.81847 0.97773 0.90085 1.45728 1.29352 1.07673 1.49514 1.17704 0.83890 0.83182 0.80074 1.90749 1.24952 1.84274 1.41524 1.21595 0.90432 0.95262 0.92436 1.21870 1.01767 0.92000 0.99034 1.21419 0.93010 0.97946 0.95418 1.19719 0.98226 0.96080 1.01016 1.21465 0.94161 0.96114 0.95522 1.22014 0.97707 1.00728 0.99366 1.23113 0.97797 0.86825 0.94543 1.67633 1.06911 1.25877 1.16011 1.19215 0.92268 0.88067 0.93879 1.67412 1.07333 1.23421 1.16162 1.21716 0.85489 0.96702 0.95438 1.44303 1.01986 1.65133 1.20028 1.18517 1.02040 1.34860 0.84232 0.90801 1.25577 0.96699 0.96933 0.95975 1.70094 1.47207 1.31332 1.03184 0.87368 0.80665 0.86965 0.78089 1.21707 1.22522 1.18600 0.92502 0.91973 0.94420 0.92513 0.91990 0.92475 0.90941 0.75142 0.82610 0.83422 0.83985 0.83983 0.81609 0.94876 0.90888 0.92902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.52 8.07 37.16 0.30 -2.22 16 2 C 0.16 3.19 3.50 -67.59 -0.24 2.96 16 3 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 4 C -0.13 -2.16 5.21 -26.61 -0.14 -2.30 16 5 C -0.12 -1.81 5.59 -26.69 -0.15 -1.96 16 6 C 0.12 2.25 2.81 -67.81 -0.19 2.06 16 7 H 0.08 1.45 7.58 -51.93 -0.39 1.06 16 8 N -0.67 -12.83 4.90 -54.47 -0.27 -13.10 16 9 C 0.57 11.25 7.78 -12.10 -0.09 11.16 16 10 O -0.54 -11.58 15.94 5.37 0.09 -11.49 16 11 C 0.16 2.86 6.75 -82.96 -0.56 2.30 16 12 C -0.13 -1.83 9.54 -39.44 -0.38 -2.21 16 13 C -0.05 -0.60 9.89 -39.28 -0.39 -0.98 16 14 C -0.15 -1.87 5.75 -106.68 -0.61 -2.48 16 15 C -0.05 -0.41 9.90 -39.24 -0.39 -0.80 16 16 C -0.18 -1.43 10.04 -39.74 -0.40 -1.83 16 17 C 0.15 1.60 11.14 -17.46 -0.19 1.40 16 18 N -0.46 -6.95 10.43 -12.59 -0.13 -7.08 16 19 C 0.30 4.97 7.62 -157.90 -1.20 3.77 16 20 N -0.43 -7.89 9.56 -9.18 -0.09 -7.98 16 21 C 0.13 2.98 4.20 -3.71 -0.02 2.97 16 22 N -0.59 -13.80 2.38 -164.77 -0.39 -14.19 16 23 C -0.27 -7.39 8.43 -15.06 -0.13 -7.52 16 24 H 0.07 2.21 6.81 -52.49 -0.36 1.85 16 25 C 0.05 1.47 4.82 -17.43 -0.08 1.39 16 26 N -0.88 -27.08 13.97 55.49 0.78 -26.31 16 27 Si 0.84 22.02 27.39 -169.99 -4.66 17.36 16 28 H -0.29 -7.65 7.11 56.52 0.40 -7.25 16 29 H -0.30 -7.98 7.11 56.52 0.40 -7.57 16 30 H -0.26 -6.53 5.24 56.52 0.30 -6.24 16 31 H 0.06 1.14 7.38 -51.93 -0.38 0.76 16 32 H 0.06 1.28 7.71 -51.93 -0.40 0.88 16 33 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 34 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.06 1.07 6.40 -51.93 -0.33 0.74 16 36 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 38 H 0.41 7.78 6.07 -40.82 -0.25 7.54 16 39 H 0.16 2.08 7.60 -52.49 -0.40 1.68 16 40 H 0.15 1.10 8.06 -52.48 -0.42 0.68 16 41 H 0.14 0.78 8.06 -52.49 -0.42 0.36 16 42 H 0.14 0.61 8.06 -52.49 -0.42 0.19 16 43 H 0.17 1.10 8.06 -52.49 -0.42 0.68 16 44 H 0.03 0.74 6.71 -51.93 -0.35 0.39 16 45 H 0.07 1.89 7.01 -51.93 -0.36 1.53 16 46 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 LS Contribution 369.58 15.07 5.57 5.57 Total: -1.00 -35.07 369.58 -10.23 -45.30 By element: Atomic # 1 Polarization: 12.48 SS G_CDS: -6.27 Total: 6.21 kcal Atomic # 6 Polarization: 10.56 SS G_CDS: -4.86 Total: 5.70 kcal Atomic # 7 Polarization: -68.55 SS G_CDS: -0.10 Total: -68.66 kcal Atomic # 8 Polarization: -11.58 SS G_CDS: 0.09 Total: -11.49 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -4.66 Total: 17.36 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -35.07 -10.23 -45.30 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071518057.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.278 kcal (2) G-P(sol) polarization free energy of solvation -35.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.305 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds