Wall clock time and date at job start Sat Apr 11 2020 06:05:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08994 * 109.70929 * 2 1 4 4 C 1.53201 * 109.58651 * 239.64084 * 2 1 3 5 5 C 1.53037 * 109.31079 * 185.58044 * 4 2 1 6 6 C 1.53039 * 109.52790 * 61.37569 * 5 4 2 7 7 H 1.08995 * 109.50139 * 178.67329 * 6 5 4 8 8 N 1.46504 * 109.49713 * 58.57672 * 6 5 4 9 9 C 1.34782 * 119.99966 * 155.00207 * 8 6 5 10 10 O 1.21491 * 119.99793 * 359.97438 * 9 8 6 11 11 C 1.48349 * 119.99969 * 179.97438 * 9 8 6 12 12 C 1.40173 * 119.20058 * 179.73321 * 11 9 8 13 13 C 1.36622 * 119.70219 * 179.72039 * 12 11 9 14 14 C 1.40594 * 118.21127 * 0.53320 * 13 12 11 15 15 C 1.40736 * 121.37829 * 179.75133 * 14 13 12 16 16 C 1.36579 * 118.13249 * 179.97438 * 15 14 13 17 17 C 1.39433 * 119.85063 * 0.02562 * 16 15 14 18 18 N 1.31010 * 121.83788 * 359.97438 * 17 16 15 19 19 C 1.33866 * 121.42628 * 0.02562 * 18 17 16 20 20 N 1.31883 * 119.20118 * 359.97438 * 11 9 8 21 21 C 1.53196 * 109.31068 * 298.61222 * 6 5 4 22 22 N 1.46925 * 108.76744 * 54.65492 * 21 6 5 23 23 C 1.36936 * 120.62847 * 126.40238 * 22 21 6 24 24 H 1.07999 * 119.99943 * 221.18689 * 23 22 21 25 25 C 1.38809 * 120.00221 * 41.19610 * 23 22 21 26 26 N 1.31619 * 120.00188 * 214.87381 * 25 23 22 27 27 Si 1.86804 * 119.99836 * 34.86571 * 25 23 22 28 28 H 1.48497 * 109.46847 * 84.63186 * 27 25 23 29 29 H 1.48501 * 109.46931 * 204.62765 * 27 25 23 30 30 H 1.48491 * 109.47368 * 324.62976 * 27 25 23 31 31 H 1.09001 * 109.47571 * 180.35174 * 1 2 3 32 32 H 1.09000 * 109.46952 * 300.35733 * 1 2 3 33 33 H 1.09004 * 109.46442 * 60.35362 * 1 2 3 34 34 H 1.08999 * 109.49516 * 65.62700 * 4 2 1 35 35 H 1.08999 * 109.52307 * 305.54774 * 4 2 1 36 36 H 1.09005 * 109.45688 * 181.38602 * 5 4 2 37 37 H 1.08995 * 109.46377 * 301.35871 * 5 4 2 38 38 H 0.97000 * 120.00193 * 334.99735 * 8 6 5 39 39 H 1.07997 * 120.14800 * 359.97438 * 12 11 9 40 40 H 1.08007 * 120.89411 * 180.23762 * 13 12 11 41 41 H 1.07997 * 120.93181 * 359.97438 * 15 14 13 42 42 H 1.07999 * 120.07460 * 179.97438 * 16 15 14 43 43 H 1.08002 * 119.08022 * 180.02562 * 17 16 15 44 44 H 1.08994 * 109.59554 * 294.86423 * 21 6 5 45 45 H 1.09004 * 109.69952 * 174.50959 * 21 6 5 46 46 H 0.96996 * 120.00360 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8976 1.0261 0.0000 4 6 2.0436 -0.7295 -1.2454 5 6 3.5675 -0.8481 -1.1701 6 6 3.9565 -1.6661 0.0635 7 1 5.0407 -1.7702 0.1039 8 7 3.3398 -2.9926 -0.0150 9 6 3.8960 -4.0339 0.6354 10 8 4.9090 -3.8725 1.2864 11 6 3.2712 -5.3771 0.5564 12 6 3.8669 -6.4494 1.2348 13 6 3.2970 -7.6895 1.1738 14 6 2.1251 -7.8457 0.4129 15 6 1.4856 -9.0943 0.3000 16 6 0.3506 -9.1706 -0.4559 17 6 -0.1401 -8.0289 -1.0882 18 7 0.4580 -6.8682 -0.9807 19 6 1.5740 -6.7226 -0.2559 20 7 2.1714 -5.5344 -0.1543 21 6 3.4649 -0.9470 1.3238 22 7 2.0225 -0.6995 1.1945 23 6 1.1537 -1.1127 2.1690 24 1 0.2056 -1.5521 1.8962 25 6 1.4914 -0.9665 3.5074 26 7 1.1104 -1.8706 4.3848 27 14 2.4870 0.5132 4.0633 28 1 1.5753 1.6597 4.3071 29 1 3.2102 0.1805 5.3169 30 1 3.4666 0.8754 3.0078 31 1 -0.3634 -1.0276 0.0063 32 1 -0.3633 0.5194 0.8868 33 1 -0.3632 0.5084 -0.8932 34 1 1.7660 -0.1670 -2.1368 35 1 1.6030 -1.7254 -1.2919 36 1 3.9378 -1.3450 -2.0668 37 1 4.0062 0.1471 -1.0990 38 1 2.5312 -3.1216 -0.5349 39 1 4.7700 -6.2950 1.8065 40 1 3.7375 -8.5285 1.6921 41 1 1.8814 -9.9676 0.7970 42 1 -0.1652 -10.1132 -0.5642 43 1 -1.0389 -8.1032 -1.6825 44 1 3.9903 0.0018 1.4317 45 1 3.6520 -1.5698 2.1987 46 1 1.3467 -1.7687 5.3200 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071518057.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:39 Heat of formation + Delta-G solvation = 40.230769 kcal Electronic energy + Delta-G solvation = -30091.304939 eV Core-core repulsion = 26173.855794 eV Total energy + Delta-G solvation = -3917.449145 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.31394 -41.06677 -39.50330 -38.39924 -35.92281 -35.15713 -34.49658 -32.68908 -32.54509 -32.05553 -31.53797 -28.08806 -27.00163 -26.33638 -25.26717 -24.13517 -23.64497 -22.71583 -21.94879 -20.53322 -19.97488 -19.30445 -18.41176 -18.10292 -17.42901 -16.98461 -16.83730 -16.46239 -16.13859 -15.79964 -15.67941 -15.43389 -15.24926 -15.10708 -14.96139 -14.50837 -14.38696 -14.35738 -13.98036 -13.86586 -13.46383 -13.20775 -12.98539 -12.86236 -12.71699 -12.62067 -12.49021 -12.21536 -12.13648 -11.87178 -11.79190 -11.64015 -11.40810 -11.20125 -11.12134 -10.53196 -10.13631 -10.09662 -9.98622 -9.86304 -8.56648 -8.25476 -5.49236 -0.97233 -0.53406 0.85286 1.31342 1.34455 1.39194 1.47792 2.00003 2.23816 2.46924 2.60180 2.93436 3.08197 3.38534 3.43319 3.50210 3.63731 3.78145 3.92222 3.95008 4.02474 4.08418 4.12516 4.25805 4.34300 4.47114 4.56744 4.62484 4.66432 4.71334 4.79373 4.82072 4.94074 4.98105 4.98423 5.06389 5.08116 5.12998 5.20746 5.22443 5.26645 5.52001 5.53545 5.62595 5.64876 5.94377 6.17013 6.27157 6.52711 7.02881 7.03865 7.15812 7.68996 8.18605 8.94925 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.012176 B = 0.003793 C = 0.003678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2299.142534 B = 7380.596638 C = 7611.705115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.154 3.846 3 H 0.042 0.958 4 C -0.124 4.124 5 C -0.109 4.109 6 C 0.124 3.876 7 H 0.087 0.913 8 N -0.674 5.674 9 C 0.560 3.440 10 O -0.567 6.567 11 C 0.126 3.874 12 C -0.149 4.149 13 C -0.026 4.026 14 C -0.156 4.156 15 C -0.041 4.041 16 C -0.162 4.162 17 C 0.157 3.843 18 N -0.512 5.512 19 C 0.268 3.732 20 N -0.467 5.467 21 C 0.135 3.865 22 N -0.600 5.600 23 C -0.244 4.244 24 H 0.037 0.963 25 C -0.006 4.006 26 N -0.931 5.931 27 Si 0.901 3.099 28 H -0.289 1.289 29 H -0.308 1.308 30 H -0.242 1.242 31 H 0.032 0.968 32 H 0.037 0.963 33 H 0.078 0.922 34 H 0.095 0.905 35 H 0.045 0.955 36 H 0.084 0.916 37 H 0.093 0.907 38 H 0.410 0.590 39 H 0.159 0.841 40 H 0.199 0.801 41 H 0.190 0.810 42 H 0.193 0.807 43 H 0.200 0.800 44 H 0.042 0.958 45 H 0.027 0.973 46 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.422 -15.576 -14.468 21.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.050 3.950 3 H 0.060 0.940 4 C -0.163 4.163 5 C -0.147 4.147 6 C 0.018 3.982 7 H 0.105 0.895 8 N -0.323 5.323 9 C 0.344 3.656 10 O -0.446 6.446 11 C -0.029 4.029 12 C -0.170 4.170 13 C -0.053 4.053 14 C -0.161 4.161 15 C -0.067 4.067 16 C -0.181 4.181 17 C -0.019 4.019 18 N -0.222 5.222 19 C 0.030 3.970 20 N -0.180 5.180 21 C 0.008 3.992 22 N -0.325 5.325 23 C -0.373 4.373 24 H 0.055 0.945 25 C -0.204 4.204 26 N -0.574 5.574 27 Si 0.729 3.271 28 H -0.216 1.216 29 H -0.236 1.236 30 H -0.166 1.166 31 H 0.051 0.949 32 H 0.056 0.944 33 H 0.097 0.903 34 H 0.113 0.887 35 H 0.064 0.936 36 H 0.103 0.897 37 H 0.111 0.889 38 H 0.247 0.753 39 H 0.176 0.824 40 H 0.216 0.784 41 H 0.207 0.793 42 H 0.210 0.790 43 H 0.216 0.784 44 H 0.060 0.940 45 H 0.046 0.954 46 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 2.434 -13.922 -14.746 20.425 hybrid contribution 0.415 -0.341 1.867 1.942 sum 2.850 -14.263 -12.879 19.427 Atomic orbital electron populations 1.21684 0.95320 1.00518 1.00859 1.20883 0.93842 0.93957 0.86309 0.94049 1.21972 0.95328 1.00502 0.98489 1.21688 0.96698 1.00588 0.95706 1.21648 0.97288 0.81732 0.97519 0.89524 1.45795 1.29277 1.07902 1.49340 1.18214 0.83638 0.84384 0.79333 1.90695 1.26184 1.85081 1.42667 1.21406 0.91596 0.95025 0.94913 1.21969 1.02484 0.92671 0.99885 1.21959 0.91770 0.97935 0.93605 1.20062 0.98708 0.96840 1.00539 1.22027 0.93877 0.95605 0.95158 1.22558 0.96952 1.01615 0.96966 1.23922 0.97945 0.86355 0.93702 1.67602 1.07811 1.28772 1.18010 1.19551 0.93268 0.88624 0.95532 1.67203 1.07935 1.25639 1.17261 1.21624 0.85063 0.96614 0.95855 1.44394 1.01882 1.65916 1.20334 1.18332 1.01067 1.32779 0.85154 0.94510 1.26089 0.98936 0.99030 0.96312 1.70202 1.50613 1.33262 1.03318 0.86406 0.79590 0.83526 0.77607 1.21636 1.23571 1.16620 0.94872 0.94416 0.90283 0.88687 0.93580 0.89738 0.88860 0.75263 0.82365 0.78383 0.79319 0.79005 0.78362 0.94031 0.95433 0.93294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.76 8.07 71.98 0.58 -4.18 16 2 C 0.15 5.87 3.50 44.98 0.16 6.03 16 3 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 4 C -0.12 -3.76 5.21 30.67 0.16 -3.60 16 5 C -0.11 -3.08 5.59 30.62 0.17 -2.91 16 6 C 0.12 4.60 2.81 45.07 0.13 4.73 16 7 H 0.09 3.13 7.58 -2.39 -0.02 3.11 16 8 N -0.67 -27.03 4.90 -444.54 -2.18 -29.21 16 9 C 0.56 23.83 7.78 86.93 0.68 24.51 16 10 O -0.57 -26.12 15.94 -3.69 -0.06 -26.18 16 11 C 0.13 4.84 6.75 42.30 0.29 5.13 16 12 C -0.15 -4.52 9.54 22.36 0.21 -4.31 16 13 C -0.03 -0.58 9.89 22.47 0.22 -0.36 16 14 C -0.16 -3.79 5.75 -21.20 -0.12 -3.91 16 15 C -0.04 -0.55 9.90 22.49 0.22 -0.33 16 16 C -0.16 -1.84 10.04 22.17 0.22 -1.62 16 17 C 0.16 2.88 11.14 85.10 0.95 3.82 16 18 N -0.51 -15.76 10.43 -193.75 -2.02 -17.78 16 19 C 0.27 9.02 7.62 135.12 1.03 10.05 16 20 N -0.47 -18.35 9.56 -182.97 -1.75 -20.09 16 21 C 0.13 6.15 4.20 86.36 0.36 6.51 16 22 N -0.60 -28.65 2.38 -675.22 -1.61 -30.26 16 23 C -0.24 -14.11 8.43 84.03 0.71 -13.40 16 24 H 0.04 2.38 6.81 -2.91 -0.02 2.36 16 25 C -0.01 -0.34 4.82 84.86 0.41 0.07 16 26 N -0.93 -60.83 13.97 21.65 0.30 -60.53 16 27 Si 0.90 47.35 27.39 68.60 1.88 49.23 16 28 H -0.29 -15.01 7.11 99.48 0.71 -14.30 16 29 H -0.31 -16.58 7.11 99.48 0.71 -15.87 16 30 H -0.24 -11.80 5.24 99.48 0.52 -11.28 16 31 H 0.03 1.37 7.38 -2.39 -0.02 1.35 16 32 H 0.04 1.57 7.71 -2.39 -0.02 1.55 16 33 H 0.08 2.30 8.14 -2.38 -0.02 2.28 16 34 H 0.09 2.24 8.14 -2.39 -0.02 2.22 16 35 H 0.05 1.56 6.40 -2.39 -0.02 1.55 16 36 H 0.08 2.01 8.14 -2.38 -0.02 1.99 16 37 H 0.09 2.31 8.14 -2.39 -0.02 2.29 16 38 H 0.41 16.46 6.07 -92.71 -0.56 15.89 16 39 H 0.16 4.50 7.60 -2.91 -0.02 4.48 16 40 H 0.20 2.12 8.06 -2.91 -0.02 2.10 16 41 H 0.19 0.80 8.06 -2.91 -0.02 0.78 16 42 H 0.19 0.31 8.06 -2.91 -0.02 0.29 16 43 H 0.20 2.02 8.06 -2.91 -0.02 2.00 16 44 H 0.04 1.82 6.71 -2.39 -0.02 1.80 16 45 H 0.03 1.49 7.01 -2.38 -0.02 1.47 16 46 H 0.26 16.16 8.31 -92.71 -0.77 15.38 16 Total: -1.00 -86.86 369.58 1.20 -85.66 By element: Atomic # 1 Polarization: 22.67 SS G_CDS: 0.27 Total: 22.93 kcal Atomic # 6 Polarization: 19.86 SS G_CDS: 6.37 Total: 26.24 kcal Atomic # 7 Polarization: -150.61 SS G_CDS: -7.26 Total: -157.87 kcal Atomic # 8 Polarization: -26.12 SS G_CDS: -0.06 Total: -26.18 kcal Atomic # 14 Polarization: 47.35 SS G_CDS: 1.88 Total: 49.23 kcal Total: -86.86 1.20 -85.66 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071518057.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.886 kcal (2) G-P(sol) polarization free energy of solvation -86.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.655 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds