Wall clock time and date at job start Sat Apr 11 2020 06:06:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.58650 * 2 1 4 4 C 1.53190 * 109.58677 * 120.28349 * 2 1 3 5 5 C 1.53049 * 109.31440 * 174.56451 * 4 2 1 6 6 C 1.53048 * 109.53589 * 298.63486 * 5 4 2 7 7 H 1.08997 * 109.49311 * 181.31202 * 6 5 4 8 8 N 1.46500 * 109.49713 * 301.41295 * 6 5 4 9 9 C 1.34777 * 119.99651 * 205.00201 * 8 6 5 10 10 O 1.21548 * 120.00133 * 359.97438 * 9 8 6 11 11 C 1.47893 * 119.99616 * 179.97438 * 9 8 6 12 12 N 1.32140 * 120.03791 * 0.02562 * 11 9 8 13 13 C 1.31983 * 122.76934 * 179.97438 * 12 11 9 14 14 C 1.37772 * 121.72741 * 0.02562 * 13 12 11 15 15 C 1.40384 * 118.73396 * 359.97438 * 14 13 12 16 16 C 1.40635 * 122.28761 * 180.02562 * 15 14 13 17 17 C 1.36646 * 117.95963 * 179.97438 * 16 15 14 18 18 C 1.39398 * 119.91863 * 0.02562 * 17 16 15 19 19 N 1.31209 * 121.85666 * 0.02562 * 18 17 16 20 20 C 1.33264 * 121.22147 * 359.68810 * 19 18 17 21 21 C 1.53192 * 109.30920 * 61.36337 * 6 5 4 22 22 N 1.46918 * 108.77985 * 305.36131 * 21 6 5 23 23 C 1.36942 * 120.63316 * 233.63578 * 22 21 6 24 24 H 1.07998 * 119.99637 * 150.89262 * 23 22 21 25 25 C 1.38808 * 119.99822 * 330.89093 * 23 22 21 26 26 N 1.31618 * 120.00035 * 160.72660 * 25 23 22 27 27 Si 1.86804 * 119.99940 * 340.72915 * 25 23 22 28 28 H 1.48498 * 109.46932 * 92.33211 * 27 25 23 29 29 H 1.48497 * 109.46797 * 212.33152 * 27 25 23 30 30 H 1.48502 * 109.47149 * 332.33182 * 27 25 23 31 31 H 1.08994 * 109.47050 * 299.99926 * 1 2 3 32 32 H 1.09001 * 109.47050 * 60.00481 * 1 2 3 33 33 H 1.09009 * 109.47224 * 179.97438 * 1 2 3 34 34 H 1.08997 * 109.50164 * 294.51660 * 4 2 1 35 35 H 1.09004 * 109.50103 * 54.61259 * 4 2 1 36 36 H 1.08997 * 109.45915 * 58.65225 * 5 4 2 37 37 H 1.08999 * 109.46170 * 178.61380 * 5 4 2 38 38 H 0.96995 * 119.99890 * 24.99784 * 8 6 5 39 39 H 1.08002 * 119.12870 * 180.02562 * 13 12 11 40 40 H 1.08004 * 120.63150 * 180.02562 * 14 13 12 41 41 H 1.08004 * 121.02145 * 0.02562 * 16 15 14 42 42 H 1.07987 * 120.04239 * 179.97438 * 17 16 15 43 43 H 1.08001 * 119.07270 * 180.02562 * 18 17 16 44 44 H 1.09002 * 109.58575 * 65.15680 * 21 6 5 45 45 H 1.09007 * 109.58204 * 185.43057 * 21 6 5 46 46 H 0.96994 * 120.00055 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0435 -0.7278 1.2463 5 6 3.5679 -0.8434 1.1729 6 6 3.9604 -1.6609 -0.0600 7 1 5.0449 -1.7625 -0.0988 8 7 3.3466 -2.9888 0.0182 9 6 3.9060 -4.0290 -0.6311 10 8 4.9195 -3.8652 -1.2818 11 6 3.2866 -5.3696 -0.5517 12 7 2.1845 -5.5483 0.1550 13 6 1.5868 -6.7202 0.2623 14 6 2.0797 -7.8448 -0.3626 15 6 3.2486 -7.7319 -1.1318 16 6 3.8161 -8.8305 -1.8016 17 6 4.9553 -8.6203 -2.5263 18 6 5.5179 -7.3462 -2.5833 19 7 4.9846 -6.3250 -1.9554 20 6 3.8710 -6.4612 -1.2362 21 6 3.4685 -0.9436 -1.3210 22 7 2.0254 -0.6991 -1.1936 23 6 1.1584 -1.1152 -2.1686 24 1 0.1414 -1.3730 -1.9125 25 6 1.5869 -1.2057 -3.4858 26 7 0.9169 -1.9421 -4.3467 27 14 3.1145 -0.2823 -4.0366 28 1 4.3014 -1.1647 -3.9027 29 1 2.9602 0.1279 -5.4554 30 1 3.2962 0.9238 -3.1895 31 1 -0.3633 0.5138 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3634 -1.0277 -0.0005 34 1 1.7638 -0.1655 2.1372 35 1 1.6049 -1.7246 1.2922 36 1 4.0046 0.1528 1.1021 37 1 3.9381 -1.3391 2.0703 38 1 2.5376 -3.1194 0.5372 39 1 0.6877 -6.7994 0.8554 40 1 1.5759 -8.7950 -0.2631 41 1 3.3649 -9.8102 -1.7457 42 1 5.4197 -9.4403 -3.0536 43 1 6.4182 -7.1954 -3.1605 44 1 3.9921 0.0064 -1.4288 45 1 3.6599 -1.5673 -2.1943 46 1 1.2160 -2.0050 -5.2671 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071576427.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:02 Heat of formation + Delta-G solvation = 69.975615 kcal Electronic energy + Delta-G solvation = -30511.583364 eV Core-core repulsion = 26595.424052 eV Total energy + Delta-G solvation = -3916.159312 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.27213 -39.39281 -38.07633 -37.45468 -34.13449 -33.71445 -32.65152 -31.61522 -31.01648 -30.60596 -30.01959 -26.45474 -25.41135 -24.74785 -24.12905 -23.43804 -22.57032 -20.92126 -20.25577 -19.00669 -18.61879 -17.67858 -17.52528 -16.37635 -16.31083 -15.45696 -15.27663 -15.00345 -14.70940 -14.47701 -14.38269 -14.09555 -13.90903 -13.47664 -13.40079 -13.22824 -13.09491 -12.85137 -12.63063 -12.37861 -12.27383 -11.99317 -11.69475 -11.41366 -11.19654 -10.87098 -10.82401 -10.45346 -10.33598 -10.19911 -9.95258 -9.88293 -9.80765 -9.57356 -9.40791 -9.27942 -9.00286 -8.60941 -8.48152 -8.22925 -6.79465 -5.82881 -3.19101 -0.06104 0.64272 1.64469 2.78422 3.40858 3.50596 3.55198 3.59240 3.60879 4.13727 4.23100 4.27827 4.40528 4.55357 4.66773 4.67576 4.70737 4.97467 5.04061 5.24241 5.27972 5.34002 5.38564 5.41314 5.49342 5.57880 5.59120 5.77642 5.86896 5.96709 6.04346 6.07366 6.19735 6.24308 6.31805 6.34382 6.40306 6.48512 6.50924 6.57996 6.61117 6.82311 7.03523 7.12240 7.16934 7.64554 7.89201 8.09041 8.20452 8.46358 8.82268 9.05810 9.85716 10.22633 11.32775 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.012107 B = 0.004394 C = 0.003971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2312.209211 B = 6371.098816 C = 7049.875079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.170 3.830 3 H 0.029 0.971 4 C -0.133 4.133 5 C -0.118 4.118 6 C 0.128 3.872 7 H 0.081 0.919 8 N -0.683 5.683 9 C 0.565 3.435 10 O -0.504 6.504 11 C 0.158 3.842 12 N -0.441 5.441 13 C 0.080 3.920 14 C -0.132 4.132 15 C -0.083 4.083 16 C -0.066 4.066 17 C -0.157 4.157 18 C 0.126 3.874 19 N -0.415 5.415 20 C 0.106 3.894 21 C 0.114 3.886 22 N -0.597 5.597 23 C -0.253 4.253 24 H 0.089 0.911 25 C 0.026 3.974 26 N -0.910 5.910 27 Si 0.874 3.126 28 H -0.284 1.284 29 H -0.306 1.306 30 H -0.271 1.271 31 H 0.039 0.961 32 H 0.062 0.938 33 H 0.056 0.944 34 H 0.057 0.943 35 H 0.062 0.938 36 H 0.072 0.928 37 H 0.058 0.942 38 H 0.407 0.593 39 H 0.165 0.835 40 H 0.144 0.856 41 H 0.143 0.857 42 H 0.141 0.859 43 H 0.163 0.837 44 H 0.032 0.968 45 H 0.080 0.920 46 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.628 -12.831 11.357 17.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.064 3.936 3 H 0.047 0.953 4 C -0.173 4.173 5 C -0.156 4.156 6 C 0.021 3.979 7 H 0.099 0.901 8 N -0.335 5.335 9 C 0.347 3.653 10 O -0.378 6.378 11 C 0.004 3.996 12 N -0.154 5.154 13 C -0.066 4.066 14 C -0.152 4.152 15 C -0.090 4.090 16 C -0.093 4.093 17 C -0.178 4.178 18 C -0.048 4.048 19 N -0.123 5.123 20 C -0.019 4.019 21 C -0.012 4.012 22 N -0.322 5.322 23 C -0.381 4.381 24 H 0.107 0.893 25 C -0.172 4.172 26 N -0.554 5.554 27 Si 0.705 3.295 28 H -0.211 1.211 29 H -0.234 1.234 30 H -0.196 1.196 31 H 0.058 0.942 32 H 0.081 0.919 33 H 0.075 0.925 34 H 0.076 0.924 35 H 0.080 0.920 36 H 0.090 0.910 37 H 0.076 0.924 38 H 0.244 0.756 39 H 0.182 0.818 40 H 0.162 0.838 41 H 0.161 0.839 42 H 0.159 0.841 43 H 0.181 0.819 44 H 0.049 0.951 45 H 0.098 0.902 46 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 5.185 -11.163 11.211 16.649 hybrid contribution 0.292 -1.321 -0.805 1.574 sum 5.477 -12.484 10.406 17.151 Atomic orbital electron populations 1.21798 0.95385 1.01842 1.00301 1.20465 0.93505 0.93349 0.86272 0.95335 1.22082 0.94946 1.01291 0.98935 1.21689 0.97269 0.99969 0.96683 1.21511 0.97223 0.82014 0.97125 0.90086 1.45662 1.29607 1.07490 1.50721 1.17474 0.84324 0.82857 0.80615 1.90829 1.23821 1.83620 1.39485 1.21630 0.91049 0.94020 0.92857 1.67376 1.06724 1.26010 1.15249 1.22578 0.99189 0.87057 0.97811 1.22319 0.95237 1.00800 0.96884 1.18952 0.96723 0.94472 0.98840 1.21374 0.95124 0.98035 0.94722 1.22091 0.96815 0.99197 0.99666 1.23311 0.98807 0.87883 0.94794 1.68319 1.07830 1.31625 1.04492 1.19494 0.93392 0.92075 0.96946 1.21774 0.85719 0.97063 0.96674 1.44373 1.01667 1.65491 1.20622 1.18837 0.95591 1.38062 0.85588 0.89335 1.25271 0.97319 0.98736 0.95904 1.69814 1.41405 1.39596 1.04538 0.87048 0.84210 0.81468 0.76800 1.21102 1.23423 1.19607 0.94214 0.91855 0.92468 0.92401 0.91961 0.90968 0.92354 0.75595 0.81785 0.83816 0.83895 0.84101 0.81941 0.95051 0.90153 0.93054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.48 7.95 37.16 0.30 -2.19 16 2 C 0.17 3.28 3.49 -67.60 -0.24 3.04 16 3 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 4 C -0.13 -2.10 5.21 -26.61 -0.14 -2.24 16 5 C -0.12 -1.81 5.59 -26.68 -0.15 -1.96 16 6 C 0.13 2.44 2.81 -67.81 -0.19 2.25 16 7 H 0.08 1.54 7.58 -51.93 -0.39 1.15 16 8 N -0.68 -13.38 4.91 -54.61 -0.27 -13.65 16 9 C 0.56 12.08 7.78 -12.31 -0.10 11.99 16 10 O -0.50 -12.10 14.87 5.32 0.08 -12.02 16 11 C 0.16 3.02 6.81 -82.55 -0.56 2.46 16 12 N -0.44 -7.37 9.48 -9.55 -0.09 -7.46 16 13 C 0.08 1.01 11.12 -17.66 -0.20 0.82 16 14 C -0.13 -1.47 9.93 -38.94 -0.39 -1.86 16 15 C -0.08 -1.12 5.75 -106.79 -0.61 -1.74 16 16 C -0.07 -0.67 9.94 -39.25 -0.39 -1.06 16 17 C -0.16 -1.53 10.03 -39.72 -0.40 -1.93 16 18 C 0.13 1.64 11.14 -17.39 -0.19 1.45 16 19 N -0.42 -7.52 8.49 -10.74 -0.09 -7.61 16 20 C 0.11 1.88 6.61 -84.62 -0.56 1.32 16 21 C 0.11 2.65 3.80 -3.71 -0.01 2.63 16 22 N -0.60 -14.14 2.67 -164.77 -0.44 -14.57 16 23 C -0.25 -7.05 9.05 -15.06 -0.14 -7.18 16 24 H 0.09 2.60 6.40 -52.49 -0.34 2.27 16 25 C 0.03 0.79 5.24 -17.43 -0.09 0.70 16 26 N -0.91 -28.96 13.97 55.49 0.78 -28.18 16 27 Si 0.87 23.86 24.34 -169.99 -4.14 19.72 16 28 H -0.28 -7.91 6.62 56.52 0.37 -7.53 16 29 H -0.31 -8.45 7.11 56.52 0.40 -8.05 16 30 H -0.27 -7.13 6.63 56.52 0.37 -6.76 16 31 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.06 1.27 7.65 -51.93 -0.40 0.88 16 33 H 0.06 1.10 7.43 -51.92 -0.39 0.71 16 34 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.06 1.02 6.40 -51.93 -0.33 0.68 16 36 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 37 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.41 7.53 6.11 -40.82 -0.25 7.28 16 39 H 0.17 1.49 8.06 -52.49 -0.42 1.06 16 40 H 0.14 1.01 8.06 -52.48 -0.42 0.59 16 41 H 0.14 0.90 8.06 -52.48 -0.42 0.48 16 42 H 0.14 0.83 8.06 -52.49 -0.42 0.41 16 43 H 0.16 1.63 8.06 -52.49 -0.42 1.21 16 44 H 0.03 0.72 7.03 -51.93 -0.37 0.35 16 45 H 0.08 2.18 4.62 -51.92 -0.24 1.94 16 46 H 0.26 7.98 8.31 -40.82 -0.34 7.64 16 LS Contribution 363.89 15.07 5.48 5.48 Total: -1.00 -36.99 363.89 -8.86 -45.86 By element: Atomic # 1 Polarization: 12.05 SS G_CDS: -6.12 Total: 5.93 kcal Atomic # 6 Polarization: 10.56 SS G_CDS: -4.06 Total: 6.51 kcal Atomic # 7 Polarization: -71.36 SS G_CDS: -0.11 Total: -71.47 kcal Atomic # 8 Polarization: -12.10 SS G_CDS: 0.08 Total: -12.02 kcal Atomic # 14 Polarization: 23.86 SS G_CDS: -4.14 Total: 19.72 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -36.99 -8.86 -45.86 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071576427.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.832 kcal (2) G-P(sol) polarization free energy of solvation -36.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.856 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds