Wall clock time and date at job start Sat Apr 11 2020 06:06:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.58650 * 2 1 4 4 C 1.53190 * 109.58677 * 120.28349 * 2 1 3 5 5 C 1.53049 * 109.31440 * 174.56451 * 4 2 1 6 6 C 1.53048 * 109.53589 * 298.63486 * 5 4 2 7 7 H 1.08997 * 109.49311 * 181.31202 * 6 5 4 8 8 N 1.46500 * 109.49713 * 301.41295 * 6 5 4 9 9 C 1.34777 * 119.99651 * 205.00201 * 8 6 5 10 10 O 1.21548 * 120.00133 * 359.97438 * 9 8 6 11 11 C 1.47893 * 119.99616 * 179.97438 * 9 8 6 12 12 N 1.32140 * 120.03791 * 0.02562 * 11 9 8 13 13 C 1.31983 * 122.76934 * 179.97438 * 12 11 9 14 14 C 1.37772 * 121.72741 * 0.02562 * 13 12 11 15 15 C 1.40384 * 118.73396 * 359.97438 * 14 13 12 16 16 C 1.40635 * 122.28761 * 180.02562 * 15 14 13 17 17 C 1.36646 * 117.95963 * 179.97438 * 16 15 14 18 18 C 1.39398 * 119.91863 * 0.02562 * 17 16 15 19 19 N 1.31209 * 121.85666 * 0.02562 * 18 17 16 20 20 C 1.33264 * 121.22147 * 359.68810 * 19 18 17 21 21 C 1.53192 * 109.30920 * 61.36337 * 6 5 4 22 22 N 1.46918 * 108.77985 * 305.36131 * 21 6 5 23 23 C 1.36942 * 120.63316 * 233.63578 * 22 21 6 24 24 H 1.07998 * 119.99637 * 150.89262 * 23 22 21 25 25 C 1.38808 * 119.99822 * 330.89093 * 23 22 21 26 26 N 1.31618 * 120.00035 * 160.72660 * 25 23 22 27 27 Si 1.86804 * 119.99940 * 340.72915 * 25 23 22 28 28 H 1.48498 * 109.46932 * 92.33211 * 27 25 23 29 29 H 1.48497 * 109.46797 * 212.33152 * 27 25 23 30 30 H 1.48502 * 109.47149 * 332.33182 * 27 25 23 31 31 H 1.08994 * 109.47050 * 299.99926 * 1 2 3 32 32 H 1.09001 * 109.47050 * 60.00481 * 1 2 3 33 33 H 1.09009 * 109.47224 * 179.97438 * 1 2 3 34 34 H 1.08997 * 109.50164 * 294.51660 * 4 2 1 35 35 H 1.09004 * 109.50103 * 54.61259 * 4 2 1 36 36 H 1.08997 * 109.45915 * 58.65225 * 5 4 2 37 37 H 1.08999 * 109.46170 * 178.61380 * 5 4 2 38 38 H 0.96995 * 119.99890 * 24.99784 * 8 6 5 39 39 H 1.08002 * 119.12870 * 180.02562 * 13 12 11 40 40 H 1.08004 * 120.63150 * 180.02562 * 14 13 12 41 41 H 1.08004 * 121.02145 * 0.02562 * 16 15 14 42 42 H 1.07987 * 120.04239 * 179.97438 * 17 16 15 43 43 H 1.08001 * 119.07270 * 180.02562 * 18 17 16 44 44 H 1.09002 * 109.58575 * 65.15680 * 21 6 5 45 45 H 1.09007 * 109.58204 * 185.43057 * 21 6 5 46 46 H 0.96994 * 120.00055 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0435 -0.7278 1.2463 5 6 3.5679 -0.8434 1.1729 6 6 3.9604 -1.6609 -0.0600 7 1 5.0449 -1.7625 -0.0988 8 7 3.3466 -2.9888 0.0182 9 6 3.9060 -4.0290 -0.6311 10 8 4.9195 -3.8652 -1.2818 11 6 3.2866 -5.3696 -0.5517 12 7 2.1845 -5.5483 0.1550 13 6 1.5868 -6.7202 0.2623 14 6 2.0797 -7.8448 -0.3626 15 6 3.2486 -7.7319 -1.1318 16 6 3.8161 -8.8305 -1.8016 17 6 4.9553 -8.6203 -2.5263 18 6 5.5179 -7.3462 -2.5833 19 7 4.9846 -6.3250 -1.9554 20 6 3.8710 -6.4612 -1.2362 21 6 3.4685 -0.9436 -1.3210 22 7 2.0254 -0.6991 -1.1936 23 6 1.1584 -1.1152 -2.1686 24 1 0.1414 -1.3730 -1.9125 25 6 1.5869 -1.2057 -3.4858 26 7 0.9169 -1.9421 -4.3467 27 14 3.1145 -0.2823 -4.0366 28 1 4.3014 -1.1647 -3.9027 29 1 2.9602 0.1279 -5.4554 30 1 3.2962 0.9238 -3.1895 31 1 -0.3633 0.5138 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3634 -1.0277 -0.0005 34 1 1.7638 -0.1655 2.1372 35 1 1.6049 -1.7246 1.2922 36 1 4.0046 0.1528 1.1021 37 1 3.9381 -1.3391 2.0703 38 1 2.5376 -3.1194 0.5372 39 1 0.6877 -6.7994 0.8554 40 1 1.5759 -8.7950 -0.2631 41 1 3.3649 -9.8102 -1.7457 42 1 5.4197 -9.4403 -3.0536 43 1 6.4182 -7.1954 -3.1605 44 1 3.9921 0.0064 -1.4288 45 1 3.6599 -1.5673 -2.1943 46 1 1.2160 -2.0050 -5.2671 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071576427.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:01 Heat of formation + Delta-G solvation = 41.691044 kcal Electronic energy + Delta-G solvation = -30512.809875 eV Core-core repulsion = 26595.424052 eV Total energy + Delta-G solvation = -3917.385823 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.33238 -40.90034 -39.33562 -38.86257 -35.84425 -34.74780 -34.51234 -32.69560 -32.57960 -32.29480 -31.19976 -28.06361 -26.85841 -26.28439 -25.11512 -24.69614 -24.21324 -22.26366 -21.83184 -20.53612 -19.87373 -18.85142 -18.62284 -18.26870 -17.56700 -17.13550 -16.74869 -16.43031 -16.19891 -15.69266 -15.59473 -15.43090 -15.25854 -15.17278 -14.92689 -14.47376 -14.28911 -14.25764 -14.01889 -13.82872 -13.69872 -13.44497 -13.25084 -13.13002 -12.65017 -12.53688 -12.38312 -12.15172 -11.82685 -11.81290 -11.66228 -11.40336 -11.29487 -11.13114 -10.95828 -10.72518 -10.37745 -10.17713 -10.01170 -9.45979 -8.80707 -8.16197 -5.44330 -1.09391 -0.32959 0.65801 1.27102 1.29276 1.37310 1.67294 2.07998 2.26982 2.40873 3.02977 3.05894 3.11663 3.23881 3.32788 3.44631 3.65586 3.73386 3.88140 3.93066 4.00274 4.12240 4.23057 4.28038 4.32484 4.46601 4.53047 4.55229 4.58898 4.64671 4.66650 4.79171 4.85994 4.93039 4.97676 5.02721 5.08423 5.08822 5.19064 5.27474 5.34926 5.52342 5.60388 5.62563 5.64777 5.92147 6.18547 6.48875 6.70551 6.94886 6.96174 7.30095 7.67406 8.08085 9.03420 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.012107 B = 0.004394 C = 0.003971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2312.209211 B = 6371.098816 C = 7049.875079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.159 3.841 3 H 0.042 0.958 4 C -0.123 4.123 5 C -0.108 4.108 6 C 0.129 3.871 7 H 0.077 0.923 8 N -0.679 5.679 9 C 0.555 3.445 10 O -0.549 6.549 11 C 0.097 3.903 12 N -0.451 5.451 13 C 0.054 3.946 14 C -0.092 4.092 15 C -0.106 4.106 16 C -0.050 4.050 17 C -0.153 4.153 18 C 0.123 3.877 19 N -0.489 5.489 20 C 0.079 3.921 21 C 0.113 3.887 22 N -0.607 5.607 23 C -0.215 4.215 24 H 0.069 0.931 25 C -0.036 4.036 26 N -0.958 5.958 27 Si 0.928 3.072 28 H -0.304 1.304 29 H -0.313 1.313 30 H -0.252 1.252 31 H 0.083 0.917 32 H 0.036 0.964 33 H 0.039 0.961 34 H 0.100 0.900 35 H 0.054 0.946 36 H 0.090 0.910 37 H 0.087 0.913 38 H 0.411 0.589 39 H 0.202 0.798 40 H 0.201 0.799 41 H 0.196 0.804 42 H 0.189 0.811 43 H 0.180 0.820 44 H 0.038 0.962 45 H 0.033 0.967 46 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.108 -15.064 14.207 21.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.054 3.946 3 H 0.060 0.940 4 C -0.162 4.162 5 C -0.146 4.146 6 C 0.023 3.977 7 H 0.095 0.905 8 N -0.331 5.331 9 C 0.339 3.661 10 O -0.425 6.425 11 C -0.054 4.054 12 N -0.164 5.164 13 C -0.094 4.094 14 C -0.112 4.112 15 C -0.113 4.113 16 C -0.075 4.075 17 C -0.173 4.173 18 C -0.051 4.051 19 N -0.197 5.197 20 C -0.045 4.045 21 C -0.013 4.013 22 N -0.332 5.332 23 C -0.345 4.345 24 H 0.086 0.914 25 C -0.230 4.230 26 N -0.606 5.606 27 Si 0.760 3.240 28 H -0.233 1.233 29 H -0.242 1.242 30 H -0.176 1.176 31 H 0.102 0.898 32 H 0.055 0.945 33 H 0.058 0.942 34 H 0.118 0.882 35 H 0.073 0.927 36 H 0.108 0.892 37 H 0.106 0.894 38 H 0.249 0.751 39 H 0.219 0.781 40 H 0.218 0.782 41 H 0.213 0.787 42 H 0.206 0.794 43 H 0.197 0.803 44 H 0.055 0.945 45 H 0.051 0.949 46 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 4.675 -13.339 14.131 19.987 hybrid contribution 0.417 -0.834 -1.620 1.869 sum 5.092 -14.173 12.512 19.579 Atomic orbital electron populations 1.21733 0.94773 1.00992 1.01155 1.20846 0.94158 0.93917 0.85633 0.94032 1.21991 0.94851 1.00969 0.98381 1.21695 0.97177 1.00320 0.95427 1.21480 0.96961 0.82140 0.97152 0.90514 1.45673 1.29619 1.07386 1.50421 1.18073 0.83952 0.84343 0.79698 1.90763 1.25760 1.84681 1.41313 1.21282 0.93484 0.93492 0.97131 1.67240 1.05999 1.28419 1.14753 1.23308 1.00416 0.86526 0.99140 1.22965 0.93125 1.02323 0.92799 1.19398 0.97784 0.93952 1.00190 1.22006 0.94396 0.98802 0.92306 1.22524 0.96686 0.98708 0.99404 1.23907 0.99043 0.88786 0.93348 1.68223 1.09671 1.34527 1.07324 1.19697 0.93971 0.93548 0.97285 1.21682 0.85666 0.96838 0.97120 1.44527 1.01357 1.66237 1.21126 1.18823 0.95121 1.34516 0.86067 0.91368 1.25788 0.99825 1.00658 0.96685 1.69928 1.43626 1.42459 1.04603 0.86172 0.81051 0.80660 0.76154 1.23313 1.24205 1.17639 0.89837 0.94500 0.94156 0.88163 0.92747 0.89158 0.89412 0.75112 0.78109 0.78245 0.78686 0.79364 0.80301 0.94466 0.94877 0.93787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.54 7.95 71.98 0.57 -3.96 16 2 C 0.16 5.82 3.49 44.97 0.16 5.98 16 3 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 4 C -0.12 -3.49 5.21 30.67 0.16 -3.33 16 5 C -0.11 -3.04 5.59 30.63 0.17 -2.87 16 6 C 0.13 5.01 2.81 45.07 0.13 5.13 16 7 H 0.08 3.03 7.58 -2.39 -0.02 3.02 16 8 N -0.68 -27.82 4.91 -444.98 -2.18 -30.00 16 9 C 0.55 25.65 7.78 86.80 0.67 26.33 16 10 O -0.55 -28.87 14.87 -3.87 -0.06 -28.92 16 11 C 0.10 3.95 6.81 42.45 0.29 4.24 16 12 N -0.45 -15.44 9.48 -184.14 -1.75 -17.19 16 13 C 0.05 1.27 11.12 84.56 0.94 2.21 16 14 C -0.09 -1.73 9.93 22.68 0.23 -1.51 16 15 C -0.11 -2.67 5.75 -21.27 -0.12 -2.79 16 16 C -0.05 -0.80 9.94 22.48 0.22 -0.57 16 17 C -0.15 -2.51 10.03 22.18 0.22 -2.29 16 18 C 0.12 3.22 11.14 85.07 0.95 4.17 16 19 N -0.49 -18.87 8.49 -187.91 -1.60 -20.47 16 20 C 0.08 2.93 6.61 40.62 0.27 3.20 16 21 C 0.11 5.39 3.80 86.36 0.33 5.72 16 22 N -0.61 -29.09 2.67 -675.23 -1.80 -30.89 16 23 C -0.22 -12.47 9.05 84.03 0.76 -11.71 16 24 H 0.07 4.20 6.40 -2.91 -0.02 4.18 16 25 C -0.04 -2.25 5.24 84.86 0.44 -1.81 16 26 N -0.96 -64.50 13.97 21.65 0.30 -64.19 16 27 Si 0.93 52.35 24.34 68.60 1.67 54.02 16 28 H -0.30 -18.01 6.62 99.48 0.66 -17.35 16 29 H -0.31 -17.73 7.11 99.48 0.71 -17.03 16 30 H -0.25 -13.19 6.63 99.48 0.66 -12.53 16 31 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 32 H 0.04 1.46 7.65 -2.39 -0.02 1.44 16 33 H 0.04 1.53 7.43 -2.38 -0.02 1.51 16 34 H 0.10 2.10 8.14 -2.39 -0.02 2.09 16 35 H 0.05 1.65 6.40 -2.38 -0.02 1.64 16 36 H 0.09 2.26 8.14 -2.39 -0.02 2.24 16 37 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 38 H 0.41 15.67 6.11 -92.71 -0.57 15.11 16 39 H 0.20 3.00 8.06 -2.91 -0.02 2.98 16 40 H 0.20 1.44 8.06 -2.91 -0.02 1.42 16 41 H 0.20 1.06 8.06 -2.91 -0.02 1.04 16 42 H 0.19 1.25 8.06 -2.92 -0.02 1.23 16 43 H 0.18 3.67 8.06 -2.91 -0.02 3.65 16 44 H 0.04 1.71 7.03 -2.39 -0.02 1.70 16 45 H 0.03 1.90 4.62 -2.38 -0.01 1.89 16 46 H 0.25 16.57 8.31 -92.71 -0.77 15.80 16 Total: -1.00 -93.20 363.89 1.34 -91.86 By element: Atomic # 1 Polarization: 19.30 SS G_CDS: 0.36 Total: 19.65 kcal Atomic # 6 Polarization: 19.74 SS G_CDS: 6.39 Total: 26.13 kcal Atomic # 7 Polarization: -155.72 SS G_CDS: -7.02 Total: -162.74 kcal Atomic # 8 Polarization: -28.87 SS G_CDS: -0.06 Total: -28.92 kcal Atomic # 14 Polarization: 52.35 SS G_CDS: 1.67 Total: 54.02 kcal Total: -93.20 1.34 -91.86 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071576427.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.550 kcal (2) G-P(sol) polarization free energy of solvation -93.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.859 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds