Wall clock time and date at job start Sat Apr 11 2020 06:06:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08999 * 109.58467 * 2 1 4 4 C 1.53192 * 109.58919 * 120.28251 * 2 1 3 5 5 C 1.53045 * 109.30843 * 174.56382 * 4 2 1 6 6 C 1.53036 * 109.54028 * 298.63197 * 5 4 2 7 7 H 1.09001 * 109.49705 * 181.35176 * 6 5 4 8 8 N 1.46495 * 109.50122 * 301.41810 * 6 5 4 9 9 C 1.34779 * 120.00051 * 204.99939 * 8 6 5 10 10 O 1.21543 * 120.00086 * 0.02562 * 9 8 6 11 11 C 1.47908 * 120.00068 * 180.02562 * 9 8 6 12 12 N 1.32377 * 120.63761 * 4.36626 * 11 9 8 13 13 N 1.28094 * 123.18310 * 180.02562 * 12 11 9 14 14 C 1.31795 * 123.49434 * 0.02562 * 13 12 11 15 15 C 1.40407 * 119.14037 * 359.97438 * 14 13 12 16 16 C 1.40235 * 122.73525 * 180.02562 * 15 14 13 17 17 C 1.36269 * 119.35911 * 179.15685 * 16 15 14 18 18 C 1.39380 * 121.07324 * 0.81733 * 17 16 15 19 19 C 1.36359 * 121.08783 * 359.45001 * 18 17 16 20 20 C 1.39833 * 119.42257 * 0.02562 * 19 18 17 21 21 C 1.53193 * 109.31036 * 61.36990 * 6 5 4 22 22 N 1.46920 * 108.77769 * 305.36306 * 21 6 5 23 23 C 1.36937 * 120.63137 * 233.63110 * 22 21 6 24 24 H 1.07999 * 120.00110 * 145.85043 * 23 22 21 25 25 C 1.38813 * 120.00052 * 325.84860 * 23 22 21 26 26 N 1.31618 * 119.99711 * 345.44645 * 25 23 22 27 27 Si 1.86800 * 119.99963 * 165.44099 * 25 23 22 28 28 H 1.48495 * 109.46861 * 0.02562 * 27 25 23 29 29 H 1.48493 * 109.46936 * 119.99991 * 27 25 23 30 30 H 1.48501 * 109.47026 * 240.00543 * 27 25 23 31 31 H 1.09003 * 109.47302 * 299.99612 * 1 2 3 32 32 H 1.09002 * 109.47392 * 60.00099 * 1 2 3 33 33 H 1.09004 * 109.46858 * 180.02562 * 1 2 3 34 34 H 1.08993 * 109.49811 * 294.51641 * 4 2 1 35 35 H 1.08998 * 109.49638 * 54.61538 * 4 2 1 36 36 H 1.09000 * 109.46018 * 58.66051 * 5 4 2 37 37 H 1.09004 * 109.45112 * 178.61570 * 5 4 2 38 38 H 0.96998 * 120.00142 * 24.99720 * 8 6 5 39 39 H 1.08004 * 120.42503 * 179.97438 * 14 13 12 40 40 H 1.07992 * 120.31931 * 359.97438 * 16 15 14 41 41 H 1.08000 * 119.46031 * 180.25013 * 17 16 15 42 42 H 1.08005 * 119.45453 * 179.42849 * 18 17 16 43 43 H 1.08005 * 120.28654 * 179.97438 * 19 18 17 44 44 H 1.09003 * 109.58655 * 65.15026 * 21 6 5 45 45 H 1.09003 * 109.58648 * 185.42958 * 21 6 5 46 46 H 0.96999 * 119.99626 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8953 1.0269 0.0000 4 6 2.0436 -0.7278 1.2463 5 6 3.5679 -0.8433 1.1727 6 6 3.9603 -1.6608 -0.0600 7 1 5.0449 -1.7629 -0.0986 8 7 3.3466 -2.9887 0.0181 9 6 3.9060 -4.0289 -0.6312 10 8 4.9200 -3.8653 -1.2812 11 6 3.2861 -5.3694 -0.5528 12 7 2.1364 -5.5451 0.0794 13 7 1.5569 -6.6833 0.1774 14 6 2.0436 -7.7940 -0.3387 15 6 3.2607 -7.7474 -1.0372 16 6 3.8465 -8.8823 -1.6166 17 6 5.0218 -8.7552 -2.2944 18 6 5.6579 -7.5200 -2.4060 19 6 5.1190 -6.3977 -1.8500 20 6 3.9083 -6.4882 -1.1562 21 6 3.4684 -0.9435 -1.3211 22 7 2.0253 -0.6990 -1.1937 23 6 1.1584 -1.1151 -2.1686 24 1 0.1669 -1.4505 -1.9023 25 6 1.5539 -1.1060 -3.4992 26 7 2.6316 -0.4425 -3.8607 27 14 0.5568 -2.0354 -4.7764 28 1 -0.5998 -2.6940 -4.1180 29 1 0.0646 -1.0862 -5.8068 30 1 1.4127 -3.0645 -5.4196 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 -0.3633 -1.0277 0.0005 34 1 1.7639 -0.1654 2.1371 35 1 1.6050 -1.7246 1.2921 36 1 4.0045 0.1530 1.1020 37 1 3.9381 -1.3390 2.0702 38 1 2.5377 -3.1193 0.5371 39 1 1.5131 -8.7280 -0.2257 40 1 3.3640 -9.8452 -1.5377 41 1 5.4722 -9.6273 -2.7447 42 1 6.5934 -7.4509 -2.9414 43 1 5.6232 -5.4472 -1.9440 44 1 3.9919 0.0065 -1.4289 45 1 3.6598 -1.5672 -2.1944 46 1 2.9077 -0.4358 -4.7906 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071677191.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:18 Heat of formation + Delta-G solvation = 66.362690 kcal Electronic energy + Delta-G solvation = -30407.689515 eV Core-core repulsion = 26491.373535 eV Total energy + Delta-G solvation = -3916.315980 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.49714 -39.40855 -38.10154 -37.59032 -34.21626 -33.41890 -32.70405 -31.87130 -31.06520 -30.09076 -29.84906 -26.43966 -25.58894 -24.82676 -24.34121 -23.02222 -22.16944 -21.24029 -20.41377 -18.85104 -18.52776 -18.21044 -17.41834 -16.33232 -16.14124 -15.49691 -15.34270 -15.10607 -14.72493 -14.54341 -14.15053 -14.04132 -13.84727 -13.74866 -13.37972 -13.10802 -12.81248 -12.67574 -12.47754 -12.43459 -11.92717 -11.68717 -11.42882 -11.20012 -11.10002 -10.96895 -10.82501 -10.72684 -10.61106 -10.34601 -10.27757 -9.93723 -9.75826 -9.54410 -9.49641 -9.46151 -9.34847 -8.64922 -8.43026 -8.39662 -6.50630 -5.73660 -3.20792 -0.08490 0.50449 1.51590 2.65258 3.21046 3.36597 3.39191 3.47037 3.48868 3.94427 3.97360 4.26336 4.39343 4.52484 4.54364 4.59497 4.88255 5.02535 5.09547 5.34086 5.36043 5.38628 5.45138 5.52102 5.54441 5.61697 5.64306 5.80587 6.03797 6.05490 6.14558 6.16377 6.24248 6.26512 6.37430 6.41693 6.48431 6.52673 6.57935 6.67213 6.72268 6.88950 7.11839 7.18920 7.34143 7.61267 7.89504 7.95044 8.53271 8.56180 8.71456 9.26744 9.89575 10.48703 11.34450 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.011072 B = 0.004374 C = 0.003916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2528.318072 B = 6400.204645 C = 7147.727547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.166 3.834 3 H 0.025 0.975 4 C -0.133 4.133 5 C -0.118 4.118 6 C 0.114 3.886 7 H 0.080 0.920 8 N -0.669 5.669 9 C 0.575 3.425 10 O -0.535 6.535 11 C 0.082 3.918 12 N -0.228 5.228 13 N -0.263 5.263 14 C 0.092 3.908 15 C -0.085 4.085 16 C -0.101 4.101 17 C -0.096 4.096 18 C -0.108 4.108 19 C -0.084 4.084 20 C -0.049 4.049 21 C 0.166 3.834 22 N -0.581 5.581 23 C -0.248 4.248 24 H 0.065 0.935 25 C 0.010 3.990 26 N -0.897 5.897 27 Si 0.891 3.109 28 H -0.277 1.277 29 H -0.289 1.289 30 H -0.291 1.291 31 H 0.036 0.964 32 H 0.060 0.940 33 H 0.052 0.948 34 H 0.054 0.946 35 H 0.058 0.942 36 H 0.073 0.927 37 H 0.052 0.948 38 H 0.408 0.592 39 H 0.178 0.822 40 H 0.138 0.862 41 H 0.131 0.869 42 H 0.133 0.867 43 H 0.177 0.823 44 H 0.030 0.970 45 H 0.087 0.913 46 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.776 -14.124 8.274 17.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.060 3.940 3 H 0.043 0.957 4 C -0.173 4.173 5 C -0.156 4.156 6 C 0.008 3.992 7 H 0.098 0.902 8 N -0.318 5.318 9 C 0.357 3.643 10 O -0.412 6.412 11 C -0.076 4.076 12 N -0.065 5.065 13 N -0.095 5.095 14 C -0.082 4.082 15 C -0.093 4.093 16 C -0.121 4.121 17 C -0.116 4.116 18 C -0.127 4.127 19 C -0.103 4.103 20 C -0.056 4.056 21 C 0.039 3.961 22 N -0.304 5.304 23 C -0.378 4.378 24 H 0.083 0.917 25 C -0.189 4.189 26 N -0.541 5.541 27 Si 0.721 3.279 28 H -0.202 1.202 29 H -0.216 1.216 30 H -0.218 1.218 31 H 0.055 0.945 32 H 0.079 0.921 33 H 0.071 0.929 34 H 0.073 0.927 35 H 0.076 0.924 36 H 0.091 0.909 37 H 0.071 0.929 38 H 0.245 0.755 39 H 0.195 0.805 40 H 0.156 0.844 41 H 0.149 0.851 42 H 0.151 0.849 43 H 0.194 0.806 44 H 0.048 0.952 45 H 0.105 0.895 46 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 4.219 -13.138 8.586 16.252 hybrid contribution 0.178 -1.389 -1.505 2.056 sum 4.397 -14.527 7.080 16.748 Atomic orbital electron populations 1.21780 0.96041 1.01349 1.00097 1.20469 0.92990 0.93544 0.87011 0.95728 1.22096 0.94986 1.01012 0.99189 1.21687 0.97254 1.00111 0.96544 1.21953 0.97086 0.81265 0.98854 0.90212 1.45784 1.28957 1.07992 1.49061 1.17311 0.83966 0.82647 0.80364 1.90585 1.25105 1.83638 1.41902 1.23171 0.93512 0.95406 0.95462 1.72760 1.05823 1.15902 1.12011 1.72636 1.26042 0.94664 1.16112 1.24765 0.92221 0.99496 0.91746 1.18909 0.96337 0.94213 0.99819 1.20903 0.96196 0.97225 0.97771 1.21142 0.95076 0.98096 0.97243 1.21263 1.00362 0.92300 0.98788 1.22128 0.93421 1.01754 0.93032 1.18655 0.96582 0.92226 0.98167 1.21094 0.84294 0.96937 0.93766 1.43985 1.02424 1.64801 1.19210 1.19060 0.97100 1.36319 0.85271 0.91705 1.25142 0.97871 0.98651 0.97243 1.69995 1.26005 1.41856 1.16234 0.86400 0.79820 0.79638 0.82065 1.20221 1.21618 1.21752 0.94456 0.92062 0.92873 0.92711 0.92380 0.90855 0.92889 0.75465 0.80473 0.84384 0.85124 0.84896 0.80584 0.95188 0.89484 0.93784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.55 7.99 37.15 0.30 -2.25 16 2 C 0.17 3.35 3.49 -67.60 -0.24 3.11 16 3 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 4 C -0.13 -2.20 5.21 -26.61 -0.14 -2.34 16 5 C -0.12 -1.87 5.59 -26.69 -0.15 -2.02 16 6 C 0.11 2.15 2.81 -67.81 -0.19 1.96 16 7 H 0.08 1.48 7.58 -51.93 -0.39 1.09 16 8 N -0.67 -12.59 4.91 -54.62 -0.27 -12.86 16 9 C 0.57 11.21 7.76 -12.30 -0.10 11.11 16 10 O -0.53 -11.11 13.24 5.33 0.07 -11.04 16 11 C 0.08 1.48 6.90 -82.42 -0.57 0.91 16 12 N -0.23 -4.12 10.70 33.56 0.36 -3.76 16 13 N -0.26 -4.23 11.42 30.90 0.35 -3.87 16 14 C 0.09 1.14 11.20 -16.75 -0.19 0.95 16 15 C -0.09 -1.10 5.75 -106.85 -0.61 -1.71 16 16 C -0.10 -0.95 9.84 -39.54 -0.39 -1.33 16 17 C -0.10 -0.86 9.95 -39.87 -0.40 -1.26 16 18 C -0.11 -1.17 9.95 -39.83 -0.40 -1.57 16 19 C -0.08 -1.22 9.27 -39.66 -0.37 -1.59 16 20 C -0.05 -0.77 5.77 -106.57 -0.61 -1.38 16 21 C 0.17 3.91 4.86 -3.71 -0.02 3.89 16 22 N -0.58 -13.97 2.88 -164.77 -0.47 -14.45 16 23 C -0.25 -6.67 8.44 -15.06 -0.13 -6.80 16 24 H 0.07 1.75 6.39 -52.49 -0.34 1.42 16 25 C 0.01 0.29 4.93 -17.43 -0.09 0.21 16 26 N -0.90 -26.40 11.51 55.49 0.64 -25.76 16 27 Si 0.89 22.53 29.58 -169.99 -5.03 17.50 16 28 H -0.28 -6.91 7.11 56.52 0.40 -6.50 16 29 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 30 H -0.29 -7.51 7.11 56.52 0.40 -7.11 16 31 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.06 1.26 7.69 -51.93 -0.40 0.86 16 33 H 0.05 1.03 7.41 -51.93 -0.38 0.64 16 34 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.06 0.99 6.40 -51.93 -0.33 0.65 16 36 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 37 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.41 7.47 6.16 -40.82 -0.25 7.22 16 39 H 0.18 1.36 8.06 -52.48 -0.42 0.93 16 40 H 0.14 0.80 8.06 -52.49 -0.42 0.38 16 41 H 0.13 0.75 8.06 -52.49 -0.42 0.32 16 42 H 0.13 1.11 8.06 -52.48 -0.42 0.68 16 43 H 0.18 2.84 5.11 -52.48 -0.27 2.57 16 44 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 45 H 0.09 2.40 6.47 -51.93 -0.34 2.07 16 46 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16 LS Contribution 367.83 15.07 5.54 5.54 Total: -1.00 -32.47 367.83 -9.15 -41.61 By element: Atomic # 1 Polarization: 13.26 SS G_CDS: -6.06 Total: 7.20 kcal Atomic # 6 Polarization: 4.16 SS G_CDS: -4.28 Total: -0.12 kcal Atomic # 7 Polarization: -61.30 SS G_CDS: 0.61 Total: -60.70 kcal Atomic # 8 Polarization: -11.11 SS G_CDS: 0.07 Total: -11.04 kcal Atomic # 14 Polarization: 22.53 SS G_CDS: -5.03 Total: 17.50 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -32.47 -9.15 -41.61 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071677191.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.977 kcal (2) G-P(sol) polarization free energy of solvation -32.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.615 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds