Wall clock time and date at job start Sat Apr 11 2020 06:06:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08999 * 109.58467 * 2 1 4 4 C 1.53192 * 109.58919 * 120.28251 * 2 1 3 5 5 C 1.53045 * 109.30843 * 174.56382 * 4 2 1 6 6 C 1.53036 * 109.54028 * 298.63197 * 5 4 2 7 7 H 1.09001 * 109.49705 * 181.35176 * 6 5 4 8 8 N 1.46495 * 109.50122 * 301.41810 * 6 5 4 9 9 C 1.34779 * 120.00051 * 204.99939 * 8 6 5 10 10 O 1.21543 * 120.00086 * 0.02562 * 9 8 6 11 11 C 1.47908 * 120.00068 * 180.02562 * 9 8 6 12 12 N 1.32377 * 120.63761 * 4.36626 * 11 9 8 13 13 N 1.28094 * 123.18310 * 180.02562 * 12 11 9 14 14 C 1.31795 * 123.49434 * 0.02562 * 13 12 11 15 15 C 1.40407 * 119.14037 * 359.97438 * 14 13 12 16 16 C 1.40235 * 122.73525 * 180.02562 * 15 14 13 17 17 C 1.36269 * 119.35911 * 179.15685 * 16 15 14 18 18 C 1.39380 * 121.07324 * 0.81733 * 17 16 15 19 19 C 1.36359 * 121.08783 * 359.45001 * 18 17 16 20 20 C 1.39833 * 119.42257 * 0.02562 * 19 18 17 21 21 C 1.53193 * 109.31036 * 61.36990 * 6 5 4 22 22 N 1.46920 * 108.77769 * 305.36306 * 21 6 5 23 23 C 1.36937 * 120.63137 * 233.63110 * 22 21 6 24 24 H 1.07999 * 120.00110 * 145.85043 * 23 22 21 25 25 C 1.38813 * 120.00052 * 325.84860 * 23 22 21 26 26 N 1.31618 * 119.99711 * 345.44645 * 25 23 22 27 27 Si 1.86800 * 119.99963 * 165.44099 * 25 23 22 28 28 H 1.48495 * 109.46861 * 0.02562 * 27 25 23 29 29 H 1.48493 * 109.46936 * 119.99991 * 27 25 23 30 30 H 1.48501 * 109.47026 * 240.00543 * 27 25 23 31 31 H 1.09003 * 109.47302 * 299.99612 * 1 2 3 32 32 H 1.09002 * 109.47392 * 60.00099 * 1 2 3 33 33 H 1.09004 * 109.46858 * 180.02562 * 1 2 3 34 34 H 1.08993 * 109.49811 * 294.51641 * 4 2 1 35 35 H 1.08998 * 109.49638 * 54.61538 * 4 2 1 36 36 H 1.09000 * 109.46018 * 58.66051 * 5 4 2 37 37 H 1.09004 * 109.45112 * 178.61570 * 5 4 2 38 38 H 0.96998 * 120.00142 * 24.99720 * 8 6 5 39 39 H 1.08004 * 120.42503 * 179.97438 * 14 13 12 40 40 H 1.07992 * 120.31931 * 359.97438 * 16 15 14 41 41 H 1.08000 * 119.46031 * 180.25013 * 17 16 15 42 42 H 1.08005 * 119.45453 * 179.42849 * 18 17 16 43 43 H 1.08005 * 120.28654 * 179.97438 * 19 18 17 44 44 H 1.09003 * 109.58655 * 65.15026 * 21 6 5 45 45 H 1.09003 * 109.58648 * 185.42958 * 21 6 5 46 46 H 0.96999 * 119.99626 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8953 1.0269 0.0000 4 6 2.0436 -0.7278 1.2463 5 6 3.5679 -0.8433 1.1727 6 6 3.9603 -1.6608 -0.0600 7 1 5.0449 -1.7629 -0.0986 8 7 3.3466 -2.9887 0.0181 9 6 3.9060 -4.0289 -0.6312 10 8 4.9200 -3.8653 -1.2812 11 6 3.2861 -5.3694 -0.5528 12 7 2.1364 -5.5451 0.0794 13 7 1.5569 -6.6833 0.1774 14 6 2.0436 -7.7940 -0.3387 15 6 3.2607 -7.7474 -1.0372 16 6 3.8465 -8.8823 -1.6166 17 6 5.0218 -8.7552 -2.2944 18 6 5.6579 -7.5200 -2.4060 19 6 5.1190 -6.3977 -1.8500 20 6 3.9083 -6.4882 -1.1562 21 6 3.4684 -0.9435 -1.3211 22 7 2.0253 -0.6990 -1.1937 23 6 1.1584 -1.1151 -2.1686 24 1 0.1669 -1.4505 -1.9023 25 6 1.5539 -1.1060 -3.4992 26 7 2.6316 -0.4425 -3.8607 27 14 0.5568 -2.0354 -4.7764 28 1 -0.5998 -2.6940 -4.1180 29 1 0.0646 -1.0862 -5.8068 30 1 1.4127 -3.0645 -5.4196 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 -0.3633 -1.0277 0.0005 34 1 1.7639 -0.1654 2.1371 35 1 1.6050 -1.7246 1.2921 36 1 4.0045 0.1530 1.1020 37 1 3.9381 -1.3390 2.0702 38 1 2.5377 -3.1193 0.5371 39 1 1.5131 -8.7280 -0.2257 40 1 3.3640 -9.8452 -1.5377 41 1 5.4722 -9.6273 -2.7447 42 1 6.5934 -7.4509 -2.9414 43 1 5.6232 -5.4472 -1.9440 44 1 3.9919 0.0065 -1.4289 45 1 3.6598 -1.5672 -2.1944 46 1 2.9077 -0.4358 -4.7906 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071677191.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:17 Heat of formation + Delta-G solvation = 44.825380 kcal Electronic energy + Delta-G solvation = -30408.623443 eV Core-core repulsion = 26491.373535 eV Total energy + Delta-G solvation = -3917.249908 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.58563 -40.88956 -39.22088 -39.03235 -35.88817 -34.59888 -34.46561 -32.85018 -32.39962 -31.81426 -31.17344 -28.00357 -27.11932 -26.40936 -25.34423 -24.12220 -23.86753 -22.52234 -22.04244 -20.44901 -19.80493 -19.19326 -18.51030 -18.23389 -17.27962 -16.98364 -16.85741 -16.53145 -16.01917 -15.81499 -15.60799 -15.44792 -15.35201 -14.99469 -14.80628 -14.52543 -14.42756 -14.04695 -13.68662 -13.63142 -13.30281 -13.03137 -12.92080 -12.71859 -12.60887 -12.56257 -12.52286 -12.45253 -12.18582 -12.08848 -11.71557 -11.59339 -11.23972 -11.09141 -10.86875 -10.76935 -10.57443 -10.42310 -10.07785 -9.53729 -8.53356 -7.86335 -5.35035 -1.12674 -0.47988 0.53902 1.32226 1.35396 1.43819 1.50367 1.94909 2.12731 2.44626 2.79550 2.87928 3.28311 3.29319 3.41281 3.58101 3.62011 3.69989 3.92526 4.00789 4.08530 4.16439 4.17912 4.23139 4.43305 4.45947 4.57308 4.62787 4.72552 4.77755 4.79972 4.92304 4.96060 5.01692 5.05957 5.09975 5.19124 5.24982 5.29686 5.32340 5.37297 5.54969 5.57690 5.61603 5.68567 5.72273 5.76592 6.44092 6.45183 7.08811 7.17053 7.57312 7.89288 8.42235 9.18359 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.011072 B = 0.004374 C = 0.003916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2528.318072 B = 6400.204645 C = 7147.727547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.156 3.844 3 H 0.020 0.980 4 C -0.123 4.123 5 C -0.110 4.110 6 C 0.123 3.877 7 H 0.078 0.922 8 N -0.668 5.668 9 C 0.568 3.432 10 O -0.560 6.560 11 C 0.049 3.951 12 N -0.248 5.248 13 N -0.302 5.302 14 C 0.116 3.884 15 C -0.102 4.102 16 C -0.079 4.079 17 C -0.092 4.092 18 C -0.089 4.089 19 C -0.128 4.128 20 C -0.072 4.072 21 C 0.177 3.823 22 N -0.594 5.594 23 C -0.236 4.236 24 H 0.064 0.936 25 C -0.046 4.046 26 N -0.930 5.930 27 Si 0.942 3.058 28 H -0.269 1.269 29 H -0.286 1.286 30 H -0.302 1.302 31 H 0.076 0.924 32 H 0.035 0.965 33 H 0.044 0.956 34 H 0.092 0.908 35 H 0.054 0.946 36 H 0.082 0.918 37 H 0.084 0.916 38 H 0.411 0.589 39 H 0.231 0.769 40 H 0.189 0.811 41 H 0.178 0.822 42 H 0.157 0.843 43 H 0.146 0.854 44 H 0.008 0.992 45 H 0.038 0.962 46 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.148 -17.798 9.821 20.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.051 3.949 3 H 0.038 0.962 4 C -0.162 4.162 5 C -0.148 4.148 6 C 0.017 3.983 7 H 0.096 0.904 8 N -0.317 5.317 9 C 0.351 3.649 10 O -0.439 6.439 11 C -0.109 4.109 12 N -0.084 5.084 13 N -0.134 5.134 14 C -0.057 4.057 15 C -0.109 4.109 16 C -0.099 4.099 17 C -0.111 4.111 18 C -0.108 4.108 19 C -0.147 4.147 20 C -0.079 4.079 21 C 0.050 3.950 22 N -0.318 5.318 23 C -0.367 4.367 24 H 0.082 0.918 25 C -0.241 4.241 26 N -0.577 5.577 27 Si 0.771 3.229 28 H -0.193 1.193 29 H -0.212 1.212 30 H -0.230 1.230 31 H 0.095 0.905 32 H 0.054 0.946 33 H 0.063 0.937 34 H 0.110 0.890 35 H 0.073 0.927 36 H 0.101 0.899 37 H 0.103 0.897 38 H 0.248 0.752 39 H 0.248 0.752 40 H 0.206 0.794 41 H 0.195 0.805 42 H 0.174 0.826 43 H 0.163 0.837 44 H 0.026 0.974 45 H 0.056 0.944 46 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 3.559 -16.812 10.177 19.972 hybrid contribution 0.428 -0.426 -2.006 2.095 sum 3.987 -17.238 8.171 19.488 Atomic orbital electron populations 1.21704 0.94995 1.00970 1.00813 1.20756 0.93988 0.93342 0.86829 0.96235 1.21982 0.95024 1.00767 0.98385 1.21674 0.97071 1.00205 0.95803 1.21721 0.96890 0.81537 0.98145 0.90351 1.45753 1.29071 1.07746 1.49162 1.17758 0.83743 0.83701 0.79650 1.90574 1.26197 1.84397 1.42711 1.22943 0.94627 0.95160 0.98149 1.72627 1.05829 1.17583 1.12325 1.72546 1.26953 0.95277 1.18601 1.25580 0.91598 0.99997 0.88554 1.19272 0.96727 0.94160 1.00751 1.21511 0.95667 0.97686 0.94989 1.21666 0.94703 0.98363 0.96385 1.21658 1.00701 0.92044 0.96421 1.21922 0.94314 1.02199 0.96290 1.18875 0.97320 0.93059 0.98686 1.20781 0.84403 0.95411 0.94422 1.44188 1.02160 1.65523 1.19949 1.19272 0.97137 1.34439 0.85862 0.91849 1.25754 0.99122 1.00220 0.99050 1.70132 1.27729 1.43973 1.15844 0.85574 0.78663 0.78351 0.80263 1.19303 1.21244 1.22996 0.90515 0.94555 0.93712 0.88952 0.92734 0.89927 0.89702 0.75164 0.75242 0.79404 0.80496 0.82570 0.83659 0.97396 0.94367 0.94617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.70 7.99 71.98 0.58 -4.13 16 2 C 0.16 6.23 3.49 44.97 0.16 6.39 16 3 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 4 C -0.12 -3.81 5.21 30.67 0.16 -3.65 16 5 C -0.11 -3.34 5.59 30.62 0.17 -3.16 16 6 C 0.12 4.82 2.81 45.07 0.13 4.95 16 7 H 0.08 3.08 7.58 -2.39 -0.02 3.06 16 8 N -0.67 -26.43 4.91 -444.99 -2.18 -28.61 16 9 C 0.57 23.87 7.76 86.80 0.67 24.54 16 10 O -0.56 -25.56 13.24 -3.85 -0.05 -25.61 16 11 C 0.05 1.87 6.90 42.43 0.29 2.16 16 12 N -0.25 -9.21 10.70 -47.74 -0.51 -9.72 16 13 N -0.30 -9.54 11.42 -56.15 -0.64 -10.18 16 14 C 0.12 2.54 11.20 85.23 0.95 3.50 16 15 C -0.10 -2.37 5.75 -21.31 -0.12 -2.49 16 16 C -0.08 -1.07 9.84 22.30 0.22 -0.85 16 17 C -0.09 -1.20 9.95 22.09 0.22 -0.98 16 18 C -0.09 -1.76 9.95 22.11 0.22 -1.54 16 19 C -0.13 -3.84 9.27 22.22 0.21 -3.64 16 20 C -0.07 -2.33 5.77 -21.13 -0.12 -2.45 16 21 C 0.18 8.86 4.86 86.36 0.42 9.28 16 22 N -0.59 -29.67 2.88 -675.23 -1.94 -31.61 16 23 C -0.24 -13.22 8.44 84.03 0.71 -12.51 16 24 H 0.06 3.52 6.39 -2.91 -0.02 3.51 16 25 C -0.05 -2.70 4.93 84.86 0.42 -2.28 16 26 N -0.93 -58.05 11.51 21.65 0.25 -57.81 16 27 Si 0.94 48.25 29.58 68.60 2.03 50.28 16 28 H -0.27 -13.19 7.11 99.48 0.71 -12.49 16 29 H -0.29 -14.33 7.11 99.48 0.71 -13.62 16 30 H -0.30 -15.90 7.11 99.48 0.71 -15.19 16 31 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 32 H 0.04 1.49 7.69 -2.39 -0.02 1.47 16 33 H 0.04 1.70 7.41 -2.39 -0.02 1.69 16 34 H 0.09 2.26 8.14 -2.39 -0.02 2.24 16 35 H 0.05 1.77 6.40 -2.39 -0.02 1.75 16 36 H 0.08 2.39 8.14 -2.39 -0.02 2.37 16 37 H 0.08 2.12 8.14 -2.38 -0.02 2.10 16 38 H 0.41 15.56 6.16 -92.71 -0.57 14.99 16 39 H 0.23 2.27 8.06 -2.91 -0.02 2.25 16 40 H 0.19 0.71 8.06 -2.91 -0.02 0.68 16 41 H 0.18 0.78 8.06 -2.91 -0.02 0.75 16 42 H 0.16 2.24 8.06 -2.91 -0.02 2.22 16 43 H 0.15 5.23 5.11 -2.91 -0.01 5.21 16 44 H 0.01 0.43 8.14 -2.39 -0.02 0.41 16 45 H 0.04 2.28 6.47 -2.39 -0.02 2.26 16 46 H 0.24 14.97 8.31 -92.71 -0.77 14.20 16 Total: -1.00 -79.94 367.83 2.68 -77.26 By element: Atomic # 1 Polarization: 22.42 SS G_CDS: 0.45 Total: 22.87 kcal Atomic # 6 Polarization: 7.85 SS G_CDS: 5.28 Total: 13.13 kcal Atomic # 7 Polarization: -132.90 SS G_CDS: -5.03 Total: -137.93 kcal Atomic # 8 Polarization: -25.56 SS G_CDS: -0.05 Total: -25.61 kcal Atomic # 14 Polarization: 48.25 SS G_CDS: 2.03 Total: 50.28 kcal Total: -79.94 2.68 -77.26 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071677191.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.089 kcal (2) G-P(sol) polarization free energy of solvation -79.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.263 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds