Wall clock time and date at job start Sat Apr 11 2020 06:06:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.70092 * 2 1 4 4 C 1.53194 * 109.58737 * 239.64080 * 2 1 3 5 5 C 1.53037 * 109.31205 * 185.57679 * 4 2 1 6 6 C 1.53349 * 109.60802 * 61.37779 * 5 4 2 7 7 H 1.09002 * 109.68888 * 178.74399 * 6 5 4 8 8 N 1.46502 * 109.47381 * 58.54343 * 6 5 4 9 9 C 1.34774 * 119.99692 * 155.37906 * 8 6 5 10 10 O 1.21551 * 120.00374 * 0.02562 * 9 8 6 11 11 C 1.47867 * 120.00351 * 180.02562 * 9 8 6 12 12 C 1.40642 * 120.25455 * 359.97438 * 11 9 8 13 13 N 1.30852 * 121.65730 * 180.02562 * 12 11 9 14 14 C 1.33591 * 121.58307 * 359.97438 * 13 12 11 15 15 C 1.40639 * 121.63253 * 180.02562 * 14 13 12 16 16 N 1.31146 * 120.04240 * 179.97438 * 15 14 13 17 17 C 1.32502 * 122.89202 * 0.02562 * 16 15 14 18 18 C 1.36313 * 121.70729 * 0.02562 * 17 16 15 19 19 C 1.40598 * 118.65275 * 359.95593 * 18 17 16 20 20 C 1.38986 * 120.26859 * 179.72724 * 11 9 8 21 21 C 1.53193 * 109.14573 * 298.70956 * 6 5 4 22 22 N 1.46920 * 108.89428 * 54.58008 * 21 6 5 23 23 C 1.36936 * 120.63523 * 126.34140 * 22 21 6 24 24 H 1.08003 * 120.00492 * 209.05146 * 23 22 21 25 25 C 1.38815 * 119.99867 * 29.04810 * 23 22 21 26 26 N 1.31620 * 120.00010 * 15.03971 * 25 23 22 27 27 Si 1.86798 * 120.00070 * 195.03905 * 25 23 22 28 28 H 1.48501 * 109.47164 * 90.00023 * 27 25 23 29 29 H 1.48499 * 109.46965 * 210.00292 * 27 25 23 30 30 H 1.48503 * 109.46892 * 329.99816 * 27 25 23 31 31 H 1.08997 * 109.46874 * 299.65028 * 1 2 3 32 32 H 1.09009 * 109.47020 * 59.64497 * 1 2 3 33 33 H 1.08999 * 109.47431 * 179.64614 * 1 2 3 34 34 H 1.09002 * 109.49760 * 305.53463 * 4 2 1 35 35 H 1.09008 * 109.49324 * 65.59412 * 4 2 1 36 36 H 1.09007 * 109.46011 * 181.38484 * 5 4 2 37 37 H 1.09001 * 109.46052 * 301.35770 * 5 4 2 38 38 H 0.96995 * 120.00281 * 335.38156 * 8 6 5 39 39 H 1.08001 * 119.17220 * 0.02562 * 12 11 9 40 40 H 1.08005 * 119.98168 * 0.02562 * 15 14 13 41 41 H 1.08001 * 119.14198 * 179.97438 * 17 16 15 42 42 H 1.07997 * 120.67248 * 179.97438 * 18 17 16 43 43 H 1.07998 * 121.10577 * 359.97438 * 20 11 9 44 44 H 1.08995 * 109.58974 * 294.71727 * 21 6 5 45 45 H 1.09002 * 109.58422 * 174.43748 * 21 6 5 46 46 H 0.96996 * 120.00153 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0436 -0.7295 -1.2454 5 6 3.5675 -0.8480 -1.1701 6 6 3.9595 -1.6674 0.0655 7 1 5.0437 -1.7715 0.1082 8 7 3.3429 -2.9940 -0.0125 9 6 3.8959 -4.0336 0.6431 10 8 4.9059 -3.8705 1.2993 11 6 3.2739 -5.3728 0.5640 12 6 2.1049 -5.5677 -0.1932 13 7 1.5315 -6.7405 -0.2817 14 6 2.0289 -7.8115 0.3430 15 6 1.4138 -9.0726 0.2482 16 7 1.9292 -10.1033 0.8742 17 6 3.0269 -10.0219 1.6118 18 6 3.6986 -8.8462 1.7694 19 6 3.2055 -7.6967 1.1273 20 6 3.8428 -6.4500 1.2333 21 6 3.4650 -0.9469 1.3237 22 7 2.0226 -0.6995 1.1945 23 6 1.1537 -1.1126 2.1690 24 1 0.1361 -1.3677 1.9124 25 6 1.5809 -1.2035 3.4866 26 7 2.7036 -0.6243 3.8559 27 14 0.5623 -2.1478 4.7357 28 1 0.9974 -3.5675 4.7575 29 1 0.7525 -1.5510 6.0821 30 1 -0.8727 -2.0755 4.3604 31 1 -0.3633 0.5084 0.8931 32 1 -0.3633 0.5194 -0.8869 33 1 -0.3634 -1.0276 -0.0063 34 1 1.6029 -1.7254 -1.2913 35 1 1.7655 -0.1672 -2.1369 36 1 3.9378 -1.3449 -2.0668 37 1 4.0061 0.1473 -1.0991 38 1 2.5367 -3.1241 -0.5358 39 1 1.6696 -4.7281 -0.7148 40 1 0.5167 -9.1926 -0.3412 41 1 3.3986 -10.9098 2.1016 42 1 4.5916 -8.7988 2.3750 43 1 4.7425 -6.3311 1.8187 44 1 3.9903 0.0021 1.4317 45 1 3.6521 -1.5696 2.1986 46 1 3.0020 -0.6875 4.7767 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071685751.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:32 Heat of formation + Delta-G solvation = 33.408352 kcal Electronic energy + Delta-G solvation = -29993.879120 eV Core-core repulsion = 26076.134133 eV Total energy + Delta-G solvation = -3917.744988 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.38295 -41.03733 -39.41412 -38.68008 -35.87884 -34.84460 -34.53571 -33.24080 -31.82959 -31.59314 -31.48776 -27.95252 -27.01395 -26.16718 -25.63534 -23.88235 -23.69832 -22.75247 -22.03557 -20.44001 -19.86981 -19.17137 -18.57611 -18.08806 -17.52310 -17.05452 -16.59879 -16.23056 -16.11940 -15.85145 -15.66144 -15.47659 -15.26153 -15.08992 -14.74588 -14.45924 -14.37191 -14.32439 -13.96900 -13.77649 -13.61044 -13.48017 -13.01750 -12.85946 -12.63800 -12.55457 -12.39534 -12.11473 -12.06204 -11.96956 -11.55822 -11.41501 -11.16913 -11.04614 -10.97820 -10.56725 -10.53680 -10.50249 -9.99199 -9.57168 -8.56642 -7.82164 -5.26555 -1.08899 -0.65980 0.60537 1.37313 1.40507 1.43403 1.46630 2.06756 2.28046 2.48527 2.90444 2.94962 3.25619 3.33559 3.36880 3.47899 3.55651 3.59847 3.65075 3.87967 4.03462 4.11833 4.15219 4.21520 4.34677 4.45711 4.51349 4.62712 4.67483 4.76260 4.79389 4.84333 4.92726 4.98953 5.07063 5.09532 5.15671 5.16716 5.29793 5.35197 5.44401 5.59362 5.62374 5.67081 5.74686 5.77439 6.44986 6.45586 6.55673 6.80542 7.19718 7.20469 7.94358 8.44043 9.22745 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.011477 B = 0.003880 C = 0.003478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2439.115682 B = 7214.161861 C = 8049.171678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.153 3.847 3 H 0.014 0.986 4 C -0.120 4.120 5 C -0.111 4.111 6 C 0.128 3.872 7 H 0.071 0.929 8 N -0.680 5.680 9 C 0.557 3.443 10 O -0.579 6.579 11 C -0.177 4.177 12 C 0.165 3.835 13 N -0.463 5.463 14 C 0.063 3.937 15 C 0.158 3.842 16 N -0.480 5.480 17 C 0.070 3.930 18 C -0.131 4.131 19 C -0.099 4.099 20 C 0.001 3.999 21 C 0.170 3.830 22 N -0.594 5.594 23 C -0.232 4.232 24 H 0.077 0.923 25 C -0.051 4.051 26 N -0.935 5.935 27 Si 0.942 3.058 28 H -0.300 1.300 29 H -0.300 1.300 30 H -0.263 1.263 31 H 0.033 0.967 32 H 0.075 0.925 33 H 0.053 0.947 34 H 0.065 0.935 35 H 0.091 0.909 36 H 0.088 0.912 37 H 0.074 0.926 38 H 0.407 0.593 39 H 0.187 0.813 40 H 0.193 0.807 41 H 0.193 0.807 42 H 0.171 0.829 43 H 0.159 0.841 44 H -0.002 1.002 45 H 0.049 0.951 46 H 0.242 0.758 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.039 -12.725 -12.983 18.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.048 3.952 3 H 0.032 0.968 4 C -0.159 4.159 5 C -0.149 4.149 6 C 0.022 3.978 7 H 0.089 0.911 8 N -0.330 5.330 9 C 0.343 3.657 10 O -0.460 6.460 11 C -0.184 4.184 12 C -0.010 4.010 13 N -0.172 5.172 14 C -0.060 4.060 15 C -0.015 4.015 16 N -0.189 5.189 17 C -0.072 4.072 18 C -0.151 4.151 19 C -0.106 4.106 20 C -0.026 4.026 21 C 0.043 3.957 22 N -0.318 5.318 23 C -0.363 4.363 24 H 0.095 0.905 25 C -0.246 4.246 26 N -0.582 5.582 27 Si 0.773 3.227 28 H -0.228 1.228 29 H -0.228 1.228 30 H -0.187 1.187 31 H 0.052 0.948 32 H 0.094 0.906 33 H 0.072 0.928 34 H 0.084 0.916 35 H 0.110 0.890 36 H 0.106 0.894 37 H 0.093 0.907 38 H 0.246 0.754 39 H 0.204 0.796 40 H 0.210 0.790 41 H 0.210 0.790 42 H 0.188 0.812 43 H 0.176 0.824 44 H 0.016 0.984 45 H 0.068 0.932 46 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -0.313 -13.651 -12.851 18.750 hybrid contribution 0.722 0.996 1.995 2.343 sum 0.409 -12.655 -10.856 16.678 Atomic orbital electron populations 1.21734 0.94765 1.01438 1.00747 1.20786 0.94105 0.93261 0.87041 0.96842 1.21975 0.94698 1.01192 0.98067 1.21732 0.97290 0.99951 0.95883 1.21637 0.96521 0.81846 0.97828 0.91130 1.45655 1.29619 1.07935 1.49837 1.18212 0.83708 0.84637 0.79113 1.90744 1.27163 1.85513 1.42584 1.21137 0.99437 0.94544 1.03259 1.23403 0.89506 0.95440 0.92637 1.67910 1.30562 0.98710 1.19974 1.20367 0.93884 0.95700 0.96031 1.23426 0.98622 0.84642 0.94818 1.67524 1.12082 1.32259 1.07048 1.22846 0.90492 0.98709 0.95146 1.22315 1.02083 0.91483 0.99216 1.19149 0.96589 0.95412 0.99415 1.22067 0.97954 0.89985 0.92589 1.20879 0.84136 0.95450 0.95276 1.44269 1.02230 1.65456 1.19855 1.19424 0.95078 1.35359 0.86421 0.90529 1.25640 0.98770 1.01409 0.98790 1.70139 1.25079 1.46742 1.16273 0.85620 0.79663 0.78054 0.79364 1.22839 1.22751 1.18695 0.94821 0.90638 0.92828 0.91626 0.89038 0.89352 0.90747 0.75429 0.79627 0.79036 0.79008 0.81190 0.82368 0.98404 0.93243 0.94891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.15 7.94 71.98 0.57 -3.57 16 2 C 0.15 5.44 3.50 44.98 0.16 5.60 16 3 H 0.01 0.53 8.14 -2.39 -0.02 0.51 16 4 C -0.12 -3.07 5.21 30.67 0.16 -2.91 16 5 C -0.11 -2.90 5.59 30.72 0.17 -2.73 16 6 C 0.13 4.51 2.83 45.17 0.13 4.64 16 7 H 0.07 2.62 7.58 -2.39 -0.02 2.60 16 8 N -0.68 -22.04 4.87 -444.52 -2.17 -24.20 16 9 C 0.56 20.14 7.74 86.79 0.67 20.82 16 10 O -0.58 -25.51 16.05 -3.88 -0.06 -25.57 16 11 C -0.18 -5.37 5.89 -19.96 -0.12 -5.48 16 12 C 0.16 4.29 10.68 85.43 0.91 5.20 16 13 N -0.46 -12.18 10.33 -187.60 -1.94 -14.12 16 14 C 0.06 1.61 6.62 40.36 0.27 1.88 16 15 C 0.16 3.40 11.25 85.38 0.96 4.36 16 16 N -0.48 -10.14 10.28 -195.38 -2.01 -12.15 16 17 C 0.07 1.22 11.08 84.14 0.93 2.15 16 18 C -0.13 -2.44 9.88 22.40 0.22 -2.22 16 19 C -0.10 -2.46 5.75 -21.28 -0.12 -2.58 16 20 C 0.00 0.03 9.51 22.98 0.22 0.24 16 21 C 0.17 8.00 4.88 86.36 0.42 8.42 16 22 N -0.59 -27.13 2.91 -675.23 -1.97 -29.09 16 23 C -0.23 -11.96 8.60 84.03 0.72 -11.23 16 24 H 0.08 3.79 6.21 -2.91 -0.02 3.77 16 25 C -0.05 -2.86 4.96 84.86 0.42 -2.44 16 26 N -0.93 -56.61 11.14 21.65 0.24 -56.37 16 27 Si 0.94 46.09 29.58 68.60 2.03 48.12 16 28 H -0.30 -15.02 7.11 99.48 0.71 -14.32 16 29 H -0.30 -15.02 7.11 99.48 0.71 -14.32 16 30 H -0.26 -11.97 7.11 99.48 0.71 -11.26 16 31 H 0.03 1.24 7.62 -2.39 -0.02 1.22 16 32 H 0.07 1.86 8.14 -2.38 -0.02 1.84 16 33 H 0.05 1.69 7.45 -2.39 -0.02 1.68 16 34 H 0.07 1.56 6.41 -2.39 -0.02 1.54 16 35 H 0.09 1.79 8.14 -2.38 -0.02 1.77 16 36 H 0.09 1.79 8.14 -2.38 -0.02 1.77 16 37 H 0.07 1.96 8.14 -2.39 -0.02 1.95 16 38 H 0.41 10.86 4.81 -92.71 -0.45 10.42 16 39 H 0.19 3.81 6.37 -2.91 -0.02 3.79 16 40 H 0.19 3.19 8.06 -2.91 -0.02 3.16 16 41 H 0.19 1.93 8.06 -2.91 -0.02 1.90 16 42 H 0.17 2.19 8.06 -2.91 -0.02 2.16 16 43 H 0.16 4.26 7.71 -2.91 -0.02 4.24 16 44 H 0.00 -0.10 8.14 -2.39 -0.02 -0.12 16 45 H 0.05 2.83 6.06 -2.39 -0.01 2.82 16 46 H 0.24 14.59 8.31 -92.71 -0.77 13.82 16 Total: -1.00 -73.69 369.93 1.40 -72.29 By element: Atomic # 1 Polarization: 20.37 SS G_CDS: 0.57 Total: 20.95 kcal Atomic # 6 Polarization: 13.44 SS G_CDS: 6.70 Total: 20.14 kcal Atomic # 7 Polarization: -128.09 SS G_CDS: -7.84 Total: -135.93 kcal Atomic # 8 Polarization: -25.51 SS G_CDS: -0.06 Total: -25.57 kcal Atomic # 14 Polarization: 46.09 SS G_CDS: 2.03 Total: 48.12 kcal Total: -73.69 1.40 -72.29 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071685751.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.700 kcal (2) G-P(sol) polarization free energy of solvation -73.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.292 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds