Wall clock time and date at job start Sat Apr 11 2020 06:06:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09006 * 109.58076 * 2 1 4 4 C 1.53189 * 109.58556 * 239.71345 * 2 1 3 5 5 C 1.53037 * 109.31226 * 185.57428 * 4 2 1 6 6 C 1.53040 * 109.53535 * 61.36799 * 5 4 2 7 7 H 1.09005 * 109.49908 * 58.61732 * 6 5 4 8 8 N 1.46506 * 109.50000 * 178.68049 * 6 5 4 9 9 C 1.34767 * 120.00147 * 204.93357 * 8 6 5 10 10 O 1.21555 * 120.00297 * 0.02562 * 9 8 6 11 11 C 1.47866 * 119.99881 * 179.97438 * 9 8 6 12 12 C 1.40637 * 120.25989 * 0.02869 * 11 9 8 13 13 N 1.30861 * 121.65268 * 179.38065 * 12 11 9 14 14 C 1.33593 * 121.58402 * 0.92226 * 13 12 11 15 15 C 1.40638 * 121.63162 * 179.06226 * 14 13 12 16 16 N 1.31153 * 120.03969 * 180.02562 * 15 14 13 17 17 C 1.32494 * 122.89161 * 359.97438 * 16 15 14 18 18 C 1.36313 * 121.70877 * 0.02660 * 17 16 15 19 19 C 1.40599 * 118.65014 * 0.24747 * 18 17 16 20 20 C 1.38991 * 120.26154 * 180.02562 * 11 9 8 21 21 C 1.53195 * 109.34057 * 298.65005 * 6 5 4 22 22 N 1.46926 * 109.58491 * 120.42431 * 2 1 3 23 23 C 1.36939 * 120.63222 * 353.40024 * 22 2 1 24 24 H 1.07990 * 119.99955 * 29.01362 * 23 22 2 25 25 C 1.38809 * 119.99749 * 209.01707 * 23 22 2 26 26 N 1.31626 * 120.00052 * 15.01257 * 25 23 22 27 27 Si 1.86806 * 119.99993 * 195.01517 * 25 23 22 28 28 H 1.48497 * 109.47047 * 89.99791 * 27 25 23 29 29 H 1.48498 * 109.47053 * 210.00104 * 27 25 23 30 30 H 1.48497 * 109.46633 * 330.00022 * 27 25 23 31 31 H 1.09005 * 109.47116 * 180.28438 * 1 2 3 32 32 H 1.09004 * 109.46857 * 300.28555 * 1 2 3 33 33 H 1.08993 * 109.47073 * 60.28621 * 1 2 3 34 34 H 1.09005 * 109.49276 * 65.62996 * 4 2 1 35 35 H 1.08991 * 109.50090 * 305.52988 * 4 2 1 36 36 H 1.09000 * 109.46250 * 301.35090 * 5 4 2 37 37 H 1.08998 * 109.45123 * 181.37980 * 5 4 2 38 38 H 0.97000 * 119.99563 * 24.93940 * 8 6 5 39 39 H 1.07992 * 119.16925 * 359.97077 * 12 11 9 40 40 H 1.08003 * 119.98035 * 359.97438 * 15 14 13 41 41 H 1.08000 * 119.14870 * 179.97438 * 17 16 15 42 42 H 1.08002 * 120.67539 * 179.97438 * 18 17 16 43 43 H 1.08004 * 121.10905 * 0.04350 * 20 11 9 44 44 H 1.08998 * 109.58644 * 174.40594 * 21 6 5 45 45 H 1.08999 * 109.58530 * 294.83313 * 21 6 5 46 46 H 0.97004 * 119.99701 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8954 1.0270 0.0000 4 6 2.0436 -0.7279 -1.2463 5 6 3.5675 -0.8465 -1.1712 6 6 3.9569 -1.6657 0.0614 7 1 3.4988 -2.6530 0.0017 8 7 5.4143 -1.8055 0.1153 9 6 5.9677 -2.8483 0.7653 10 8 5.2577 -3.6733 1.3065 11 6 7.4386 -2.9896 0.8191 12 6 8.2653 -2.0386 0.1945 13 7 9.5700 -2.1305 0.2353 14 6 10.1811 -3.1426 0.8572 15 6 11.5829 -3.2527 0.8850 16 7 12.1502 -4.2599 1.5046 17 6 11.4587 -5.2057 2.1234 18 6 10.0960 -5.1921 2.1554 19 6 9.4169 -4.1455 1.5073 20 6 8.0151 -4.0632 1.4875 21 6 3.4650 -0.9492 1.3230 22 7 2.0226 -0.7010 1.1936 23 6 1.1537 -1.1158 2.1674 24 1 0.1361 -1.3700 1.9104 25 6 1.5810 -1.2095 3.4848 26 7 2.7043 -0.6317 3.8550 27 14 0.5619 -2.1555 4.7322 28 1 0.9960 -3.5755 4.7512 29 1 0.7527 -1.5615 6.0798 30 1 -0.8730 -2.0815 4.3572 31 1 -0.3633 -1.0277 0.0051 32 1 -0.3633 0.5183 0.8875 33 1 -0.3633 0.5093 -0.8925 34 1 1.7660 -0.1641 -2.1370 35 1 1.6030 -1.7237 -1.2934 36 1 4.0061 0.1488 -1.0991 37 1 3.9376 -1.3423 -2.0685 38 1 5.9809 -1.1473 -0.3168 39 1 7.8120 -1.2067 -0.3238 40 1 12.1926 -2.5079 0.3952 41 1 11.9884 -6.0086 2.6144 42 1 9.5491 -5.9720 2.6644 43 1 7.4054 -4.8091 1.9757 44 1 3.6517 -1.5756 2.1952 45 1 3.9902 -0.0005 1.4326 46 1 3.0026 -0.6969 4.7757 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071685752.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:36 Heat of formation + Delta-G solvation = 30.032926 kcal Electronic energy + Delta-G solvation = -29049.802216 eV Core-core repulsion = 25131.910859 eV Total energy + Delta-G solvation = -3917.891357 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.39662 -41.00824 -39.42810 -38.73708 -36.13971 -34.85354 -34.67947 -33.24648 -31.90766 -31.59332 -31.49377 -27.91956 -27.10758 -25.98422 -25.62636 -24.01881 -23.70122 -22.65531 -21.87408 -21.03617 -19.71413 -19.11609 -18.59381 -18.28741 -17.48731 -17.18213 -16.71492 -16.28044 -16.13464 -15.83288 -15.62721 -15.43114 -15.26596 -15.11338 -14.98000 -14.50238 -14.40206 -14.30732 -14.05657 -13.75361 -13.53808 -13.45771 -13.07547 -12.74017 -12.73718 -12.57531 -12.26793 -12.11687 -11.98676 -11.97183 -11.68915 -11.51080 -11.24394 -11.14089 -10.97672 -10.57490 -10.54596 -10.52336 -10.12569 -9.58070 -8.61862 -7.84962 -5.30756 -1.10465 -0.66861 0.59516 1.39537 1.41548 1.45216 1.50982 1.96529 2.19170 2.50363 2.91174 2.92459 3.24134 3.30356 3.35246 3.45128 3.53495 3.56628 3.72350 3.85495 3.98072 4.11400 4.14624 4.25882 4.34916 4.40198 4.45776 4.61275 4.64233 4.72766 4.79182 4.81767 4.90141 4.93058 5.02319 5.09544 5.15085 5.20329 5.30028 5.34010 5.43050 5.44182 5.55792 5.62960 5.71282 5.80981 6.39577 6.44914 6.50743 6.80728 7.12892 7.18662 7.90977 8.39300 9.19819 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.014725 B = 0.002847 C = 0.002499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1901.094900 B = 9833.632889 C =11200.899538 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.153 3.847 3 H 0.023 0.977 4 C -0.118 4.118 5 C -0.109 4.109 6 C 0.131 3.869 7 H 0.055 0.945 8 N -0.697 5.697 9 C 0.556 3.444 10 O -0.575 6.575 11 C -0.176 4.176 12 C 0.166 3.834 13 N -0.463 5.463 14 C 0.065 3.935 15 C 0.158 3.842 16 N -0.481 5.481 17 C 0.071 3.929 18 C -0.131 4.131 19 C -0.098 4.098 20 C 0.003 3.997 21 C 0.178 3.822 22 N -0.603 5.603 23 C -0.248 4.248 24 H 0.075 0.925 25 C -0.054 4.054 26 N -0.933 5.933 27 Si 0.955 3.045 28 H -0.295 1.295 29 H -0.296 1.296 30 H -0.262 1.262 31 H 0.045 0.955 32 H 0.036 0.964 33 H 0.078 0.922 34 H 0.096 0.904 35 H 0.052 0.948 36 H 0.076 0.924 37 H 0.088 0.912 38 H 0.414 0.586 39 H 0.196 0.804 40 H 0.194 0.806 41 H 0.192 0.808 42 H 0.169 0.831 43 H 0.156 0.844 44 H 0.044 0.956 45 H 0.000 1.000 46 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.685 -4.179 -11.794 19.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.048 3.952 3 H 0.041 0.959 4 C -0.157 4.157 5 C -0.147 4.147 6 C 0.025 3.975 7 H 0.073 0.927 8 N -0.348 5.348 9 C 0.343 3.657 10 O -0.455 6.455 11 C -0.183 4.183 12 C -0.009 4.009 13 N -0.171 5.171 14 C -0.058 4.058 15 C -0.015 4.015 16 N -0.190 5.190 17 C -0.071 4.071 18 C -0.151 4.151 19 C -0.105 4.105 20 C -0.024 4.024 21 C 0.051 3.949 22 N -0.327 5.327 23 C -0.378 4.378 24 H 0.092 0.908 25 C -0.249 4.249 26 N -0.580 5.580 27 Si 0.784 3.216 28 H -0.223 1.223 29 H -0.222 1.222 30 H -0.187 1.187 31 H 0.064 0.936 32 H 0.056 0.944 33 H 0.097 0.903 34 H 0.114 0.886 35 H 0.071 0.929 36 H 0.095 0.905 37 H 0.107 0.893 38 H 0.252 0.748 39 H 0.213 0.787 40 H 0.210 0.790 41 H 0.208 0.792 42 H 0.187 0.813 43 H 0.174 0.826 44 H 0.062 0.938 45 H 0.018 0.982 46 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 15.727 -4.328 -11.558 19.991 hybrid contribution -1.840 -0.712 1.679 2.591 sum 13.887 -5.039 -9.879 17.772 Atomic orbital electron populations 1.21743 0.94897 1.01113 1.01015 1.20818 0.94212 0.93459 0.86757 0.95915 1.21951 0.94642 1.00896 0.98259 1.21672 0.97070 1.00139 0.95787 1.21604 0.78493 0.99472 0.97901 0.92660 1.45783 1.08113 1.26348 1.54586 1.18347 0.87502 0.81606 0.78250 1.90815 1.63950 1.44028 1.46685 1.21053 0.93558 0.99439 1.04250 1.23509 0.88339 0.96308 0.92728 1.67936 1.11065 1.21332 1.16762 1.20346 0.96862 0.91882 0.96695 1.23450 0.89119 0.95253 0.93655 1.67527 1.41699 1.02337 1.07397 1.22829 0.91401 0.97029 0.95889 1.22316 0.96319 0.97914 0.98592 1.19130 0.93722 0.97683 0.99977 1.22076 0.93403 0.95512 0.91374 1.20796 0.83750 0.95451 0.94940 1.44323 1.02575 1.65505 1.20312 1.19487 0.95182 1.36408 0.86749 0.90750 1.25772 0.99049 1.01129 0.98934 1.70158 1.25050 1.46411 1.16400 0.85435 0.79356 0.78088 0.78699 1.22308 1.22222 1.18670 0.93578 0.94434 0.90286 0.88554 0.92908 0.90506 0.89325 0.74820 0.78748 0.78953 0.79154 0.81332 0.82620 0.93761 0.98210 0.94744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.55 7.94 71.98 0.57 -3.98 16 2 C 0.15 5.84 3.50 44.98 0.16 6.00 16 3 H 0.02 0.90 8.14 -2.38 -0.02 0.88 16 4 C -0.12 -3.45 5.37 30.67 0.16 -3.29 16 5 C -0.11 -2.94 5.35 30.62 0.16 -2.78 16 6 C 0.13 4.80 2.60 45.07 0.12 4.92 16 7 H 0.06 2.37 7.58 -2.38 -0.02 2.36 16 8 N -0.70 -20.73 5.03 -445.00 -2.24 -22.97 16 9 C 0.56 18.86 7.74 86.79 0.67 19.53 16 10 O -0.57 -25.45 16.05 -3.89 -0.06 -25.52 16 11 C -0.18 -4.69 5.89 -19.96 -0.12 -4.81 16 12 C 0.17 3.53 10.68 85.42 0.91 4.44 16 13 N -0.46 -10.36 10.33 -187.61 -1.94 -12.30 16 14 C 0.07 1.46 6.62 40.36 0.27 1.72 16 15 C 0.16 2.99 11.25 85.38 0.96 3.95 16 16 N -0.48 -9.17 10.28 -195.39 -2.01 -11.17 16 17 C 0.07 1.10 11.08 84.14 0.93 2.03 16 18 C -0.13 -2.19 9.88 22.40 0.22 -1.97 16 19 C -0.10 -2.18 5.75 -21.27 -0.12 -2.30 16 20 C 0.00 0.08 9.51 22.98 0.22 0.30 16 21 C 0.18 8.60 4.86 86.36 0.42 9.02 16 22 N -0.60 -29.73 2.99 -675.21 -2.02 -31.75 16 23 C -0.25 -13.65 8.61 84.03 0.72 -12.93 16 24 H 0.07 3.96 6.20 -2.92 -0.02 3.94 16 25 C -0.05 -3.11 4.96 84.86 0.42 -2.69 16 26 N -0.93 -57.25 11.14 21.65 0.24 -57.00 16 27 Si 0.95 47.04 29.58 68.60 2.03 49.07 16 28 H -0.30 -14.83 7.11 99.48 0.71 -14.12 16 29 H -0.30 -14.59 7.11 99.48 0.71 -13.89 16 30 H -0.26 -12.05 7.11 99.48 0.71 -11.34 16 31 H 0.05 1.66 7.40 -2.38 -0.02 1.64 16 32 H 0.04 1.46 7.66 -2.38 -0.02 1.44 16 33 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 34 H 0.10 2.12 8.14 -2.38 -0.02 2.10 16 35 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 36 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 37 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 38 H 0.41 8.55 6.63 -92.71 -0.61 7.93 16 39 H 0.20 2.76 6.37 -2.91 -0.02 2.74 16 40 H 0.19 2.69 8.06 -2.91 -0.02 2.66 16 41 H 0.19 1.65 8.06 -2.91 -0.02 1.62 16 42 H 0.17 1.92 8.06 -2.91 -0.02 1.90 16 43 H 0.16 3.91 7.71 -2.91 -0.02 3.89 16 44 H 0.04 2.60 6.06 -2.39 -0.01 2.59 16 45 H 0.00 -0.01 8.14 -2.39 -0.02 -0.03 16 46 H 0.24 14.71 8.31 -92.71 -0.77 13.94 16 Total: -1.00 -77.86 373.41 1.09 -76.77 By element: Atomic # 1 Polarization: 17.30 SS G_CDS: 0.40 Total: 17.70 kcal Atomic # 6 Polarization: 10.48 SS G_CDS: 6.68 Total: 17.17 kcal Atomic # 7 Polarization: -127.23 SS G_CDS: -7.97 Total: -135.19 kcal Atomic # 8 Polarization: -25.45 SS G_CDS: -0.06 Total: -25.52 kcal Atomic # 14 Polarization: 47.04 SS G_CDS: 2.03 Total: 49.07 kcal Total: -77.86 1.09 -76.77 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071685752.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.803 kcal (2) G-P(sol) polarization free energy of solvation -77.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.770 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds