Wall clock time and date at job start Sat Apr 11 2020 06:06:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.69945 * 2 1 4 4 C 1.53191 * 109.58872 * 239.63986 * 2 1 3 5 5 C 1.53043 * 109.31113 * 185.58029 * 4 2 1 6 6 C 1.53035 * 109.52636 * 61.37137 * 5 4 2 7 7 H 1.09009 * 109.49576 * 178.68128 * 6 5 4 8 8 N 1.46501 * 109.49891 * 58.58054 * 6 5 4 9 9 C 1.34777 * 119.99780 * 155.00015 * 8 6 5 10 10 O 1.21500 * 120.00319 * 359.97438 * 9 8 6 11 11 C 1.48281 * 119.99588 * 180.02562 * 9 8 6 12 12 C 1.40371 * 119.18631 * 179.97438 * 11 9 8 13 13 C 1.36554 * 119.82544 * 179.97438 * 12 11 9 14 14 C 1.40552 * 118.06235 * 359.97438 * 13 12 11 15 15 C 1.40513 * 122.21350 * 180.02562 * 14 13 12 16 16 C 1.36259 * 118.68363 * 179.97438 * 15 14 13 17 17 N 1.32584 * 121.80502 * 0.02562 * 16 15 14 18 18 C 1.31118 * 122.87247 * 359.97438 * 17 16 15 19 19 C 1.40859 * 119.95850 * 0.02562 * 18 17 16 20 20 N 1.31891 * 119.18856 * 359.72036 * 11 9 8 21 21 C 1.53194 * 109.31292 * 298.60959 * 6 5 4 22 22 N 1.46922 * 109.58343 * 120.34841 * 2 1 3 23 23 C 1.36938 * 120.63458 * 353.37721 * 22 2 1 24 24 H 1.08002 * 119.99890 * 29.05483 * 23 22 2 25 25 C 1.38809 * 120.00242 * 209.05491 * 23 22 2 26 26 N 1.31618 * 120.00290 * 15.05364 * 25 23 22 27 27 Si 1.86802 * 120.00128 * 195.04849 * 25 23 22 28 28 H 1.48501 * 109.46973 * 89.99972 * 27 25 23 29 29 H 1.48494 * 109.47222 * 210.00108 * 27 25 23 30 30 H 1.48497 * 109.47200 * 330.00246 * 27 25 23 31 31 H 1.09001 * 109.47514 * 180.35742 * 1 2 3 32 32 H 1.09002 * 109.47676 * 300.36264 * 1 2 3 33 33 H 1.09003 * 109.46778 * 60.35704 * 1 2 3 34 34 H 1.08997 * 109.49343 * 65.63125 * 4 2 1 35 35 H 1.08997 * 109.52139 * 305.54403 * 4 2 1 36 36 H 1.09001 * 109.45895 * 181.38703 * 5 4 2 37 37 H 1.08999 * 109.46035 * 301.35555 * 5 4 2 38 38 H 0.96996 * 119.99724 * 334.99645 * 8 6 5 39 39 H 1.08004 * 120.08485 * 359.94906 * 12 11 9 40 40 H 1.08002 * 120.97112 * 180.02562 * 13 12 11 41 41 H 1.08002 * 120.65818 * 0.02562 * 15 14 13 42 42 H 1.08004 * 119.09715 * 179.97438 * 16 15 14 43 43 H 1.08001 * 120.01765 * 180.02562 * 18 17 16 44 44 H 1.08994 * 109.60259 * 294.87384 * 21 6 5 45 45 H 1.08999 * 109.70281 * 174.50657 * 21 6 5 46 46 H 0.96998 * 120.00359 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8974 1.0262 0.0000 4 6 2.0436 -0.7295 -1.2453 5 6 3.5676 -0.8481 -1.1699 6 6 3.9565 -1.6659 0.0637 7 1 5.0409 -1.7699 0.1041 8 7 3.3399 -2.9925 -0.0147 9 6 3.8962 -4.0336 0.6358 10 8 4.9093 -3.8721 1.2869 11 6 3.2724 -5.3764 0.5560 12 6 3.8663 -6.4489 1.2398 13 6 3.3025 -7.6909 1.1757 14 6 2.1308 -7.8467 0.4153 15 6 1.4782 -9.0848 0.2901 16 6 0.3460 -9.1539 -0.4650 17 7 -0.1500 -8.0891 -1.0798 18 6 0.4047 -6.9032 -1.0080 19 6 1.5798 -6.7208 -0.2530 20 7 2.1703 -5.5327 -0.1515 21 6 3.4650 -0.9467 1.3239 22 7 2.0224 -0.6994 1.1945 23 6 1.1536 -1.1125 2.1691 24 1 0.1360 -1.3674 1.9125 25 6 1.5809 -1.2037 3.4866 26 7 2.7035 -0.6245 3.8561 27 14 0.5624 -2.1483 4.7356 28 1 0.9975 -3.5680 4.7570 29 1 0.7526 -1.5519 6.0821 30 1 -0.8726 -2.0761 4.3604 31 1 -0.3634 -1.0276 0.0064 32 1 -0.3634 0.5194 0.8867 33 1 -0.3633 0.5083 -0.8932 34 1 1.7661 -0.1669 -2.1367 35 1 1.6031 -1.7254 -1.2917 36 1 3.9379 -1.3450 -2.0666 37 1 4.0062 0.1472 -1.0989 38 1 2.5314 -3.1215 -0.5346 39 1 4.7671 -6.2921 1.8147 40 1 3.7437 -8.5290 1.6948 41 1 1.8658 -9.9640 0.7833 42 1 -0.1608 -10.1023 -0.5661 43 1 -0.0392 -6.0668 -1.5275 44 1 3.9902 0.0022 1.4318 45 1 3.6519 -1.5694 2.1988 46 1 3.0019 -0.6879 4.7768 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071686341.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:56 Heat of formation + Delta-G solvation = 55.798240 kcal Electronic energy + Delta-G solvation = -30182.261515 eV Core-core repulsion = 26265.487426 eV Total energy + Delta-G solvation = -3916.774089 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.38937 -39.60122 -38.17853 -37.24382 -34.31376 -33.87187 -32.71441 -31.70989 -31.04493 -30.17840 -29.81185 -26.42390 -25.57900 -24.91285 -24.37719 -22.85976 -22.15998 -21.42236 -20.36978 -18.74518 -18.67497 -18.04194 -17.55348 -16.34917 -16.15951 -15.39911 -15.27813 -15.03864 -14.87788 -14.55009 -14.22062 -14.18460 -13.89401 -13.74536 -13.37428 -13.22498 -13.10315 -12.89778 -12.56723 -12.44411 -12.26380 -11.87652 -11.23188 -11.13857 -11.03754 -10.94443 -10.85110 -10.71767 -10.45359 -10.33774 -10.29769 -9.93503 -9.70807 -9.57916 -9.45099 -9.43109 -9.39150 -8.68242 -8.43108 -8.36972 -6.58018 -5.72650 -3.16074 -0.09812 0.41341 1.61582 2.47409 3.35643 3.38653 3.45787 3.46484 3.49515 3.92086 4.02470 4.15706 4.25499 4.45539 4.51914 4.56088 4.77900 4.96369 5.15189 5.31955 5.33463 5.38242 5.44606 5.47918 5.53531 5.53782 5.62634 5.70282 5.93911 6.03560 6.12641 6.14278 6.17042 6.35385 6.36665 6.38476 6.47116 6.53329 6.64620 6.69718 6.89791 7.07529 7.15303 7.34799 7.41692 7.69174 7.72343 7.86575 8.08474 8.51418 8.66435 9.26165 9.90474 10.46223 11.35305 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.010354 B = 0.004182 C = 0.003912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2703.591084 B = 6693.892071 C = 7156.205349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.166 3.834 3 H 0.025 0.975 4 C -0.132 4.132 5 C -0.118 4.118 6 C 0.115 3.885 7 H 0.078 0.922 8 N -0.673 5.673 9 C 0.563 3.437 10 O -0.536 6.536 11 C 0.133 3.867 12 C -0.104 4.104 13 C -0.071 4.071 14 C -0.068 4.068 15 C -0.147 4.147 16 C 0.076 3.924 17 N -0.479 5.479 18 C 0.177 3.823 19 C 0.067 3.933 20 N -0.423 5.423 21 C 0.161 3.839 22 N -0.583 5.583 23 C -0.245 4.245 24 H 0.068 0.932 25 C 0.006 3.994 26 N -0.900 5.900 27 Si 0.894 3.106 28 H -0.291 1.291 29 H -0.291 1.291 30 H -0.280 1.280 31 H 0.052 0.948 32 H 0.060 0.940 33 H 0.037 0.963 34 H 0.053 0.947 35 H 0.057 0.943 36 H 0.052 0.948 37 H 0.072 0.928 38 H 0.407 0.593 39 H 0.156 0.844 40 H 0.149 0.851 41 H 0.141 0.859 42 H 0.157 0.843 43 H 0.176 0.824 44 H 0.027 0.973 45 H 0.098 0.902 46 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.187 -13.222 -10.739 17.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.059 3.941 3 H 0.043 0.957 4 C -0.171 4.171 5 C -0.156 4.156 6 C 0.009 3.991 7 H 0.096 0.904 8 N -0.322 5.322 9 C 0.346 3.654 10 O -0.412 6.412 11 C -0.022 4.022 12 C -0.126 4.126 13 C -0.096 4.096 14 C -0.075 4.075 15 C -0.168 4.168 16 C -0.066 4.066 17 N -0.188 5.188 18 C 0.003 3.997 19 C -0.058 4.058 20 N -0.136 5.136 21 C 0.034 3.966 22 N -0.306 5.306 23 C -0.375 4.375 24 H 0.086 0.914 25 C -0.193 4.193 26 N -0.544 5.544 27 Si 0.724 3.276 28 H -0.218 1.218 29 H -0.217 1.217 30 H -0.205 1.205 31 H 0.071 0.929 32 H 0.079 0.921 33 H 0.056 0.944 34 H 0.072 0.928 35 H 0.076 0.924 36 H 0.071 0.929 37 H 0.090 0.910 38 H 0.243 0.757 39 H 0.174 0.826 40 H 0.167 0.833 41 H 0.159 0.841 42 H 0.175 0.825 43 H 0.193 0.807 44 H 0.045 0.955 45 H 0.116 0.884 46 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -0.249 -12.625 -11.027 16.765 hybrid contribution 0.245 -1.221 1.608 2.034 sum -0.003 -13.846 -9.419 16.746 Atomic orbital electron populations 1.21796 0.96103 1.01334 1.00099 1.20460 0.92914 0.93584 0.87108 0.95744 1.22081 0.95084 1.00899 0.99079 1.21688 0.97155 1.00107 0.96670 1.21907 0.97026 0.81531 0.98630 0.90405 1.45735 1.29129 1.08000 1.49361 1.17696 0.84130 0.83121 0.80418 1.90771 1.24891 1.84180 1.41391 1.21739 0.91324 0.95449 0.93695 1.21957 1.01139 0.91904 0.97614 1.21394 0.93634 0.98006 0.96612 1.19074 0.96192 0.94876 0.97372 1.21878 0.97131 0.97007 1.00764 1.22290 0.93591 0.97273 0.93417 1.67510 1.32012 0.99213 1.20026 1.23243 0.89042 0.94925 0.92459 1.19920 0.97694 0.89040 0.99187 1.67810 1.07303 1.23248 1.15226 1.21205 0.83832 0.97154 0.94362 1.44050 1.02682 1.64779 1.19065 1.19099 0.94642 1.37653 0.86119 0.91421 1.25020 0.97702 0.99694 0.96903 1.69973 1.23227 1.44413 1.16818 0.86419 0.79915 0.79915 0.81317 1.21802 1.21744 1.20496 0.92859 0.92131 0.94410 0.92793 0.92429 0.92947 0.90977 0.75654 0.82640 0.83332 0.84104 0.82544 0.80733 0.95487 0.88407 0.93716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.48 7.94 37.16 0.30 -2.18 16 2 C 0.17 3.26 3.50 -67.60 -0.24 3.03 16 3 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 4 C -0.13 -2.12 5.21 -26.61 -0.14 -2.26 16 5 C -0.12 -1.85 5.59 -26.69 -0.15 -2.00 16 6 C 0.11 2.17 2.81 -67.81 -0.19 1.98 16 7 H 0.08 1.48 7.58 -51.92 -0.39 1.09 16 8 N -0.67 -12.43 4.90 -54.49 -0.27 -12.69 16 9 C 0.56 10.85 7.78 -12.13 -0.09 10.75 16 10 O -0.54 -11.62 15.94 5.37 0.09 -11.54 16 11 C 0.13 2.21 6.75 -82.91 -0.56 1.65 16 12 C -0.10 -1.45 9.54 -39.39 -0.38 -1.83 16 13 C -0.07 -0.79 9.93 -39.32 -0.39 -1.18 16 14 C -0.07 -0.83 5.75 -106.71 -0.61 -1.44 16 15 C -0.15 -1.39 9.88 -39.44 -0.39 -1.78 16 16 C 0.08 0.75 11.07 -17.94 -0.20 0.55 16 17 N -0.48 -5.76 10.28 -13.05 -0.13 -5.89 16 18 C 0.18 2.20 11.26 -16.87 -0.19 2.01 16 19 C 0.07 0.94 6.62 -84.88 -0.56 0.38 16 20 N -0.42 -6.65 9.49 -7.51 -0.07 -6.72 16 21 C 0.16 3.80 4.90 -3.71 -0.02 3.78 16 22 N -0.58 -13.82 2.91 -164.78 -0.48 -14.30 16 23 C -0.25 -6.50 8.61 -15.06 -0.13 -6.63 16 24 H 0.07 1.77 6.20 -52.49 -0.33 1.45 16 25 C 0.01 0.15 4.96 -17.43 -0.09 0.07 16 26 N -0.90 -26.33 11.14 55.49 0.62 -25.71 16 27 Si 0.89 22.30 29.58 -169.99 -5.03 17.27 16 28 H -0.29 -7.40 7.11 56.52 0.40 -6.99 16 29 H -0.29 -7.33 7.11 56.52 0.40 -6.92 16 30 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 31 H 0.05 0.99 7.40 -51.93 -0.38 0.60 16 32 H 0.06 1.21 7.66 -51.93 -0.40 0.81 16 33 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 35 H 0.06 0.93 6.40 -51.93 -0.33 0.60 16 36 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 38 H 0.41 7.11 6.07 -40.82 -0.25 6.86 16 39 H 0.16 2.03 7.60 -52.48 -0.40 1.63 16 40 H 0.15 1.10 8.06 -52.49 -0.42 0.68 16 41 H 0.14 0.87 8.06 -52.49 -0.42 0.44 16 42 H 0.16 1.04 8.06 -52.48 -0.42 0.61 16 43 H 0.18 1.84 8.06 -52.49 -0.42 1.42 16 44 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 45 H 0.10 2.72 6.06 -51.93 -0.31 2.41 16 46 H 0.25 7.27 8.31 -40.82 -0.34 6.93 16 LS Contribution 372.01 15.07 5.61 5.61 Total: -1.00 -32.22 372.01 -9.86 -42.07 By element: Atomic # 1 Polarization: 13.17 SS G_CDS: -6.16 Total: 7.01 kcal Atomic # 6 Polarization: 8.93 SS G_CDS: -4.03 Total: 4.90 kcal Atomic # 7 Polarization: -64.99 SS G_CDS: -0.33 Total: -65.32 kcal Atomic # 8 Polarization: -11.62 SS G_CDS: 0.09 Total: -11.54 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -5.03 Total: 17.27 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -32.22 -9.86 -42.07 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071686341.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.869 kcal (2) G-P(sol) polarization free energy of solvation -32.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.071 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds