Wall clock time and date at job start Sat Apr 11 2020 06:06:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.69945 * 2 1 4 4 C 1.53191 * 109.58872 * 239.63986 * 2 1 3 5 5 C 1.53043 * 109.31113 * 185.58029 * 4 2 1 6 6 C 1.53035 * 109.52636 * 61.37137 * 5 4 2 7 7 H 1.09009 * 109.49576 * 178.68128 * 6 5 4 8 8 N 1.46501 * 109.49891 * 58.58054 * 6 5 4 9 9 C 1.34777 * 119.99780 * 155.00015 * 8 6 5 10 10 O 1.21500 * 120.00319 * 359.97438 * 9 8 6 11 11 C 1.48281 * 119.99588 * 180.02562 * 9 8 6 12 12 C 1.40371 * 119.18631 * 179.97438 * 11 9 8 13 13 C 1.36554 * 119.82544 * 179.97438 * 12 11 9 14 14 C 1.40552 * 118.06235 * 359.97438 * 13 12 11 15 15 C 1.40513 * 122.21350 * 180.02562 * 14 13 12 16 16 C 1.36259 * 118.68363 * 179.97438 * 15 14 13 17 17 N 1.32584 * 121.80502 * 0.02562 * 16 15 14 18 18 C 1.31118 * 122.87247 * 359.97438 * 17 16 15 19 19 C 1.40859 * 119.95850 * 0.02562 * 18 17 16 20 20 N 1.31891 * 119.18856 * 359.72036 * 11 9 8 21 21 C 1.53194 * 109.31292 * 298.60959 * 6 5 4 22 22 N 1.46922 * 109.58343 * 120.34841 * 2 1 3 23 23 C 1.36938 * 120.63458 * 353.37721 * 22 2 1 24 24 H 1.08002 * 119.99890 * 29.05483 * 23 22 2 25 25 C 1.38809 * 120.00242 * 209.05491 * 23 22 2 26 26 N 1.31618 * 120.00290 * 15.05364 * 25 23 22 27 27 Si 1.86802 * 120.00128 * 195.04849 * 25 23 22 28 28 H 1.48501 * 109.46973 * 89.99972 * 27 25 23 29 29 H 1.48494 * 109.47222 * 210.00108 * 27 25 23 30 30 H 1.48497 * 109.47200 * 330.00246 * 27 25 23 31 31 H 1.09001 * 109.47514 * 180.35742 * 1 2 3 32 32 H 1.09002 * 109.47676 * 300.36264 * 1 2 3 33 33 H 1.09003 * 109.46778 * 60.35704 * 1 2 3 34 34 H 1.08997 * 109.49343 * 65.63125 * 4 2 1 35 35 H 1.08997 * 109.52139 * 305.54403 * 4 2 1 36 36 H 1.09001 * 109.45895 * 181.38703 * 5 4 2 37 37 H 1.08999 * 109.46035 * 301.35555 * 5 4 2 38 38 H 0.96996 * 119.99724 * 334.99645 * 8 6 5 39 39 H 1.08004 * 120.08485 * 359.94906 * 12 11 9 40 40 H 1.08002 * 120.97112 * 180.02562 * 13 12 11 41 41 H 1.08002 * 120.65818 * 0.02562 * 15 14 13 42 42 H 1.08004 * 119.09715 * 179.97438 * 16 15 14 43 43 H 1.08001 * 120.01765 * 180.02562 * 18 17 16 44 44 H 1.08994 * 109.60259 * 294.87384 * 21 6 5 45 45 H 1.08999 * 109.70281 * 174.50657 * 21 6 5 46 46 H 0.96998 * 120.00359 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8974 1.0262 0.0000 4 6 2.0436 -0.7295 -1.2453 5 6 3.5676 -0.8481 -1.1699 6 6 3.9565 -1.6659 0.0637 7 1 5.0409 -1.7699 0.1041 8 7 3.3399 -2.9925 -0.0147 9 6 3.8962 -4.0336 0.6358 10 8 4.9093 -3.8721 1.2869 11 6 3.2724 -5.3764 0.5560 12 6 3.8663 -6.4489 1.2398 13 6 3.3025 -7.6909 1.1757 14 6 2.1308 -7.8467 0.4153 15 6 1.4782 -9.0848 0.2901 16 6 0.3460 -9.1539 -0.4650 17 7 -0.1500 -8.0891 -1.0798 18 6 0.4047 -6.9032 -1.0080 19 6 1.5798 -6.7208 -0.2530 20 7 2.1703 -5.5327 -0.1515 21 6 3.4650 -0.9467 1.3239 22 7 2.0224 -0.6994 1.1945 23 6 1.1536 -1.1125 2.1691 24 1 0.1360 -1.3674 1.9125 25 6 1.5809 -1.2037 3.4866 26 7 2.7035 -0.6245 3.8561 27 14 0.5624 -2.1483 4.7356 28 1 0.9975 -3.5680 4.7570 29 1 0.7526 -1.5519 6.0821 30 1 -0.8726 -2.0761 4.3604 31 1 -0.3634 -1.0276 0.0064 32 1 -0.3634 0.5194 0.8867 33 1 -0.3633 0.5083 -0.8932 34 1 1.7661 -0.1669 -2.1367 35 1 1.6031 -1.7254 -1.2917 36 1 3.9379 -1.3450 -2.0666 37 1 4.0062 0.1472 -1.0989 38 1 2.5314 -3.1215 -0.5346 39 1 4.7671 -6.2921 1.8147 40 1 3.7437 -8.5290 1.6948 41 1 1.8658 -9.9640 0.7833 42 1 -0.1608 -10.1023 -0.5661 43 1 -0.0392 -6.0668 -1.5275 44 1 3.9902 0.0022 1.4318 45 1 3.6519 -1.5694 2.1988 46 1 3.0019 -0.6879 4.7768 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071686341.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:55 Heat of formation + Delta-G solvation = 34.384651 kcal Electronic energy + Delta-G solvation = -30183.190078 eV Core-core repulsion = 26265.487426 eV Total energy + Delta-G solvation = -3917.702652 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.37499 -41.00994 -39.47354 -38.58391 -35.87752 -34.96698 -34.48279 -32.81370 -32.23097 -31.74525 -31.22814 -27.96503 -27.07054 -26.39881 -25.38623 -23.90382 -23.75872 -22.71725 -21.96952 -20.37825 -19.78969 -19.16083 -18.54042 -18.12951 -17.40338 -17.03191 -16.63749 -16.30163 -15.95226 -15.87037 -15.67273 -15.44990 -15.28937 -15.13245 -14.80616 -14.47334 -14.43637 -14.12730 -14.01135 -13.74870 -13.53660 -13.11425 -13.02610 -12.87353 -12.65349 -12.57347 -12.41586 -12.12489 -12.07952 -11.95664 -11.66230 -11.57558 -11.22632 -11.05432 -10.84828 -10.55606 -10.52980 -10.48226 -9.99153 -9.51215 -8.57172 -7.82484 -5.26772 -1.05937 -0.56374 0.69387 1.35695 1.37556 1.38476 1.45530 2.05542 2.28295 2.47902 2.82146 2.98526 3.31734 3.32546 3.43432 3.56423 3.61982 3.64023 3.75918 4.01591 4.07875 4.10934 4.19351 4.26926 4.48300 4.49169 4.61121 4.63607 4.69758 4.73455 4.82148 4.82655 4.96805 5.02038 5.04656 5.08820 5.11813 5.25350 5.26958 5.33101 5.49883 5.56288 5.61664 5.65976 5.73336 5.74959 6.29594 6.44446 6.64187 6.84450 7.18824 7.20099 7.93187 8.43209 9.22542 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.010354 B = 0.004182 C = 0.003912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2703.591084 B = 6693.892071 C = 7156.205349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.155 3.845 3 H 0.018 0.982 4 C -0.121 4.121 5 C -0.110 4.110 6 C 0.123 3.877 7 H 0.072 0.928 8 N -0.669 5.669 9 C 0.556 3.444 10 O -0.572 6.572 11 C 0.105 3.895 12 C -0.127 4.127 13 C -0.046 4.046 14 C -0.080 4.080 15 C -0.132 4.132 16 C 0.072 3.928 17 N -0.489 5.489 18 C 0.165 3.835 19 C 0.044 3.956 20 N -0.436 5.436 21 C 0.171 3.829 22 N -0.595 5.595 23 C -0.232 4.232 24 H 0.072 0.928 25 C -0.052 4.052 26 N -0.934 5.934 27 Si 0.944 3.056 28 H -0.300 1.300 29 H -0.296 1.296 30 H -0.265 1.265 31 H 0.047 0.953 32 H 0.035 0.965 33 H 0.076 0.924 34 H 0.091 0.909 35 H 0.058 0.942 36 H 0.084 0.916 37 H 0.078 0.922 38 H 0.412 0.588 39 H 0.155 0.845 40 H 0.194 0.806 41 H 0.184 0.816 42 H 0.193 0.807 43 H 0.183 0.817 44 H 0.003 0.997 45 H 0.050 0.950 46 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.385 -16.028 -12.913 20.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.050 3.950 3 H 0.036 0.964 4 C -0.160 4.160 5 C -0.148 4.148 6 C 0.017 3.983 7 H 0.091 0.909 8 N -0.318 5.318 9 C 0.341 3.659 10 O -0.451 6.451 11 C -0.049 4.049 12 C -0.148 4.148 13 C -0.072 4.072 14 C -0.087 4.087 15 C -0.152 4.152 16 C -0.070 4.070 17 N -0.198 5.198 18 C -0.008 4.008 19 C -0.082 4.082 20 N -0.149 5.149 21 C 0.044 3.956 22 N -0.319 5.319 23 C -0.363 4.363 24 H 0.089 0.911 25 C -0.247 4.247 26 N -0.581 5.581 27 Si 0.775 3.225 28 H -0.228 1.228 29 H -0.223 1.223 30 H -0.189 1.189 31 H 0.066 0.934 32 H 0.054 0.946 33 H 0.095 0.905 34 H 0.110 0.890 35 H 0.076 0.924 36 H 0.103 0.897 37 H 0.097 0.903 38 H 0.250 0.750 39 H 0.172 0.828 40 H 0.211 0.789 41 H 0.201 0.799 42 H 0.210 0.790 43 H 0.200 0.800 44 H 0.021 0.979 45 H 0.068 0.932 46 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -1.862 -15.423 -13.255 20.421 hybrid contribution 0.637 -0.467 2.204 2.341 sum -1.226 -15.891 -11.051 19.394 Atomic orbital electron populations 1.21721 0.94853 1.01157 1.00834 1.20761 0.94067 0.93296 0.86879 0.96423 1.21968 0.94855 1.00896 0.98265 1.21671 0.97235 1.00055 0.95840 1.21660 0.96637 0.81972 0.98048 0.90948 1.45688 1.29251 1.07634 1.49276 1.18242 0.83755 0.84438 0.79457 1.90730 1.26530 1.85092 1.42795 1.21423 0.92626 0.94633 0.96181 1.22013 1.01773 0.92589 0.98470 1.21851 0.92465 0.97912 0.94944 1.19435 0.96614 0.95547 0.97104 1.22307 0.96195 0.97016 0.99712 1.22959 0.93771 0.97840 0.92404 1.67567 1.32279 0.99550 1.20374 1.23379 0.88922 0.95675 0.92844 1.20231 0.98445 0.89216 1.00328 1.67658 1.07121 1.24717 1.15399 1.20880 0.84128 0.95544 0.95042 1.44258 1.02307 1.65470 1.19859 1.19372 0.94920 1.35491 0.86529 0.91069 1.25644 0.98887 1.01429 0.98733 1.70136 1.25003 1.46663 1.16337 0.85585 0.79480 0.78084 0.79373 1.22809 1.22267 1.18929 0.93355 0.94620 0.90510 0.89020 0.92362 0.89743 0.90296 0.75013 0.82775 0.78873 0.79879 0.79008 0.79995 0.97948 0.93189 0.94767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.48 7.94 71.98 0.57 -3.91 16 2 C 0.16 5.96 3.50 44.97 0.16 6.12 16 3 H 0.02 0.72 8.14 -2.39 -0.02 0.70 16 4 C -0.12 -3.56 5.21 30.67 0.16 -3.40 16 5 C -0.11 -3.26 5.59 30.62 0.17 -3.09 16 6 C 0.12 4.76 2.81 45.07 0.13 4.89 16 7 H 0.07 2.88 7.58 -2.38 -0.02 2.86 16 8 N -0.67 -25.36 4.90 -444.61 -2.18 -27.54 16 9 C 0.56 22.49 7.78 86.92 0.68 23.16 16 10 O -0.57 -26.49 15.94 -3.72 -0.06 -26.55 16 11 C 0.11 3.60 6.75 42.33 0.29 3.89 16 12 C -0.13 -3.52 9.54 22.40 0.21 -3.31 16 13 C -0.05 -0.92 9.93 22.44 0.22 -0.70 16 14 C -0.08 -1.73 5.75 -21.21 -0.12 -1.85 16 15 C -0.13 -1.90 9.88 22.36 0.22 -1.68 16 16 C 0.07 1.12 11.07 84.12 0.93 2.05 16 17 N -0.49 -10.53 10.28 -195.21 -2.01 -12.53 16 18 C 0.17 3.89 11.26 85.44 0.96 4.86 16 19 C 0.04 1.18 6.62 40.54 0.27 1.44 16 20 N -0.44 -13.81 9.49 -177.68 -1.69 -15.49 16 21 C 0.17 8.50 4.90 86.36 0.42 8.92 16 22 N -0.60 -28.94 2.91 -675.23 -1.96 -30.91 16 23 C -0.23 -12.62 8.61 84.03 0.72 -11.90 16 24 H 0.07 3.77 6.20 -2.91 -0.02 3.75 16 25 C -0.05 -3.01 4.96 84.86 0.42 -2.59 16 26 N -0.93 -57.76 11.14 21.65 0.24 -57.52 16 27 Si 0.94 47.35 29.58 68.60 2.03 49.38 16 28 H -0.30 -15.33 7.11 99.48 0.71 -14.63 16 29 H -0.30 -14.93 7.11 99.48 0.71 -14.22 16 30 H -0.26 -12.46 7.11 99.48 0.71 -11.75 16 31 H 0.05 1.72 7.40 -2.39 -0.02 1.70 16 32 H 0.03 1.39 7.66 -2.39 -0.02 1.38 16 33 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 34 H 0.09 2.11 8.14 -2.39 -0.02 2.09 16 35 H 0.06 1.74 6.40 -2.39 -0.02 1.73 16 36 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 37 H 0.08 2.26 8.14 -2.39 -0.02 2.25 16 38 H 0.41 14.48 6.07 -92.71 -0.56 13.92 16 39 H 0.15 4.18 7.60 -2.91 -0.02 4.16 16 40 H 0.19 1.97 8.06 -2.91 -0.02 1.95 16 41 H 0.18 1.07 8.06 -2.91 -0.02 1.04 16 42 H 0.19 1.54 8.06 -2.91 -0.02 1.52 16 43 H 0.18 3.74 8.06 -2.91 -0.02 3.71 16 44 H 0.00 0.14 8.14 -2.39 -0.02 0.12 16 45 H 0.05 2.98 6.06 -2.39 -0.01 2.96 16 46 H 0.24 14.87 8.31 -92.71 -0.77 14.09 16 Total: -1.00 -76.09 372.01 1.24 -74.85 By element: Atomic # 1 Polarization: 22.95 SS G_CDS: 0.45 Total: 23.40 kcal Atomic # 6 Polarization: 16.51 SS G_CDS: 6.41 Total: 22.92 kcal Atomic # 7 Polarization: -136.40 SS G_CDS: -7.60 Total: -143.99 kcal Atomic # 8 Polarization: -26.49 SS G_CDS: -0.06 Total: -26.55 kcal Atomic # 14 Polarization: 47.35 SS G_CDS: 2.03 Total: 49.38 kcal Total: -76.09 1.24 -74.85 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071686341.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.230 kcal (2) G-P(sol) polarization free energy of solvation -76.086 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.846 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds