Wall clock time and date at job start Sat Apr 11 2020 06:07:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08994 * 109.70603 * 2 1 4 4 C 1.53194 * 109.58921 * 239.64080 * 2 1 3 5 5 C 1.53031 * 109.31427 * 185.58136 * 4 2 1 6 6 C 1.53047 * 109.54180 * 61.36472 * 5 4 2 7 7 H 1.08997 * 109.52539 * 178.66590 * 6 5 4 8 8 N 1.46498 * 109.49363 * 58.58798 * 6 5 4 9 9 C 1.34773 * 119.99960 * 155.16232 * 8 6 5 10 10 O 1.21524 * 119.99918 * 0.02562 * 9 8 6 11 11 C 1.48001 * 120.00165 * 179.97438 * 9 8 6 12 12 C 1.38900 * 121.17052 * 354.12662 * 11 9 8 13 13 C 1.39345 * 119.67160 * 179.97438 * 12 11 9 14 14 N 1.31099 * 121.90562 * 0.02562 * 13 12 11 15 15 C 1.33284 * 121.61519 * 359.95935 * 14 13 12 16 16 C 1.40837 * 121.91075 * 180.02562 * 15 14 13 17 17 C 1.36158 * 118.77028 * 180.02562 * 16 15 14 18 18 N 1.32538 * 121.96063 * 359.97438 * 17 16 15 19 19 C 1.31343 * 122.60364 * 0.02562 * 18 17 16 20 20 C 1.40090 * 119.87218 * 359.96052 * 19 18 17 21 21 C 1.53187 * 109.30984 * 298.64007 * 6 5 4 22 22 N 1.46925 * 109.58259 * 120.35628 * 2 1 3 23 23 C 1.36935 * 120.63381 * 353.41204 * 22 2 1 24 24 H 1.08004 * 120.00039 * 37.34278 * 23 22 2 25 25 C 1.38815 * 120.00396 * 217.33257 * 23 22 2 26 26 N 1.31611 * 120.00327 * 214.67284 * 25 23 22 27 27 Si 1.86799 * 119.99761 * 34.68044 * 25 23 22 28 28 H 1.48500 * 109.47107 * 86.95432 * 27 25 23 29 29 H 1.48496 * 109.46988 * 206.95733 * 27 25 23 30 30 H 1.48505 * 109.47035 * 326.95665 * 27 25 23 31 31 H 1.09002 * 109.47553 * 299.64623 * 1 2 3 32 32 H 1.09002 * 109.47164 * 59.64696 * 1 2 3 33 33 H 1.09005 * 109.47272 * 179.64040 * 1 2 3 34 34 H 1.09002 * 109.49466 * 305.53524 * 4 2 1 35 35 H 1.09002 * 109.49673 * 65.59128 * 4 2 1 36 36 H 1.09001 * 109.45974 * 301.34591 * 5 4 2 37 37 H 1.08999 * 109.46107 * 181.38940 * 5 4 2 38 38 H 0.97007 * 120.00120 * 335.16336 * 8 6 5 39 39 H 1.07996 * 120.16124 * 359.97438 * 12 11 9 40 40 H 1.08002 * 119.04130 * 180.02562 * 13 12 11 41 41 H 1.08009 * 120.61326 * 0.04020 * 16 15 14 42 42 H 1.08003 * 119.02327 * 179.72227 * 17 16 15 43 43 H 1.07998 * 120.06109 * 180.02562 * 19 18 17 44 44 H 1.09000 * 109.58698 * 174.41977 * 21 6 5 45 45 H 1.09003 * 109.58312 * 294.69791 * 21 6 5 46 46 H 0.97005 * 120.00639 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0261 0.0000 4 6 2.0436 -0.7295 -1.2454 5 6 3.5675 -0.8481 -1.1700 6 6 3.9569 -1.6658 0.0637 7 1 5.0411 -1.7702 0.1042 8 7 3.3405 -2.9925 -0.0146 9 6 3.8952 -4.0329 0.6384 10 8 4.9063 -3.8703 1.2925 11 6 3.2722 -5.3730 0.5598 12 6 2.0530 -5.5628 -0.0782 13 6 1.4950 -6.8384 -0.1342 14 7 2.0877 -7.8781 0.4011 15 6 3.2588 -7.7688 1.0280 16 6 3.9012 -8.8815 1.6048 17 6 5.0962 -8.6966 2.2306 18 7 5.6690 -7.5041 2.3110 19 6 5.1283 -6.4232 1.7969 20 6 3.8984 -6.5071 1.1314 21 6 3.4649 -0.9470 1.3238 22 7 2.0224 -0.6996 1.1945 23 6 1.1535 -1.1134 2.1686 24 1 0.1805 -1.4956 1.8974 25 6 1.5234 -1.0420 3.5046 26 7 1.1129 -1.9623 4.3512 27 14 2.6036 0.3605 4.1010 28 1 1.7517 1.5211 4.4649 29 1 3.3746 -0.0802 5.2911 30 1 3.5431 0.7555 3.0209 31 1 -0.3634 0.5083 0.8931 32 1 -0.3633 0.5193 -0.8868 33 1 -0.3634 -1.0277 -0.0065 34 1 1.6029 -1.7254 -1.2912 35 1 1.7656 -0.1673 -2.1369 36 1 4.0061 0.1472 -1.0992 37 1 3.9378 -1.3449 -2.0667 38 1 2.5331 -3.1222 -0.5365 39 1 1.5401 -4.7258 -0.5284 40 1 0.5469 -6.9745 -0.6331 41 1 3.4543 -9.8633 1.5515 42 1 5.5902 -9.5463 2.6783 43 1 5.6314 -5.4717 1.8861 44 1 3.6516 -1.5718 2.1973 45 1 3.9921 0.0008 1.4331 46 1 1.3710 -1.9122 5.2850 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071705260.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:07:08 Heat of formation + Delta-G solvation = 64.420082 kcal Electronic energy + Delta-G solvation = -30399.689677 eV Core-core repulsion = 26483.289459 eV Total energy + Delta-G solvation = -3916.400218 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.35200 -39.68269 -38.05520 -37.80948 -34.47061 -33.59239 -32.80836 -31.54842 -31.23564 -30.77426 -30.02484 -26.61121 -25.49557 -24.86091 -24.16472 -23.38959 -22.55856 -21.09739 -20.59112 -19.15542 -18.58209 -18.07757 -17.26315 -16.50835 -16.16315 -15.53006 -15.42505 -15.09574 -14.87206 -14.69921 -14.35998 -14.26239 -14.13705 -13.78489 -13.54189 -13.30059 -13.22759 -12.90912 -12.77116 -12.62481 -12.23393 -12.02316 -11.85750 -11.50219 -11.31353 -11.02981 -10.66780 -10.61463 -10.50522 -10.34436 -10.28977 -10.00722 -9.90267 -9.71496 -9.50402 -9.36873 -9.19692 -8.81448 -8.50999 -8.33869 -6.82686 -6.09902 -3.38134 -0.04718 0.65085 1.57145 2.82478 3.17908 3.35157 3.39334 3.51020 3.53604 4.04340 4.10749 4.40118 4.53532 4.54629 4.56285 4.66436 4.70384 4.82901 5.08897 5.11761 5.19948 5.22249 5.27889 5.37111 5.43728 5.53054 5.71370 5.71958 5.84827 5.87610 5.91040 5.93646 6.07598 6.17319 6.20453 6.24479 6.32748 6.37960 6.41756 6.47405 6.63533 6.81170 6.88441 6.92876 7.00681 7.64840 7.70242 7.96257 7.97549 8.33498 8.38253 8.93744 9.69353 10.14148 11.04872 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.012405 B = 0.004106 C = 0.003769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2256.528045 B = 6818.128853 C = 7427.870279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.163 3.837 3 H 0.028 0.972 4 C -0.131 4.131 5 C -0.119 4.119 6 C 0.124 3.876 7 H 0.084 0.916 8 N -0.684 5.684 9 C 0.561 3.439 10 O -0.532 6.532 11 C -0.032 4.032 12 C -0.141 4.141 13 C 0.151 3.849 14 N -0.468 5.468 15 C 0.153 3.847 16 C -0.153 4.153 17 C 0.091 3.909 18 N -0.492 5.492 19 C 0.165 3.835 20 C -0.133 4.133 21 C 0.132 3.868 22 N -0.591 5.591 23 C -0.275 4.275 24 H 0.078 0.922 25 C 0.050 3.950 26 N -0.878 5.878 27 Si 0.840 3.160 28 H -0.290 1.290 29 H -0.297 1.297 30 H -0.259 1.259 31 H 0.063 0.937 32 H 0.038 0.962 33 H 0.054 0.946 34 H 0.056 0.944 35 H 0.058 0.942 36 H 0.074 0.926 37 H 0.057 0.943 38 H 0.399 0.601 39 H 0.147 0.853 40 H 0.170 0.830 41 H 0.145 0.855 42 H 0.158 0.842 43 H 0.201 0.799 44 H 0.074 0.926 45 H 0.036 0.964 46 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.797 -6.755 -13.419 15.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.057 3.943 3 H 0.045 0.955 4 C -0.170 4.170 5 C -0.158 4.158 6 C 0.018 3.982 7 H 0.102 0.898 8 N -0.334 5.334 9 C 0.347 3.653 10 O -0.411 6.411 11 C -0.045 4.045 12 C -0.162 4.162 13 C -0.022 4.022 14 N -0.177 5.177 15 C 0.027 3.973 16 C -0.174 4.174 17 C -0.053 4.053 18 N -0.201 5.201 19 C -0.006 4.006 20 C -0.138 4.138 21 C 0.005 3.995 22 N -0.315 5.315 23 C -0.403 4.403 24 H 0.096 0.904 25 C -0.153 4.153 26 N -0.516 5.516 27 Si 0.667 3.333 28 H -0.218 1.218 29 H -0.224 1.224 30 H -0.184 1.184 31 H 0.082 0.918 32 H 0.057 0.943 33 H 0.073 0.927 34 H 0.075 0.925 35 H 0.076 0.924 36 H 0.092 0.908 37 H 0.076 0.924 38 H 0.236 0.764 39 H 0.165 0.835 40 H 0.187 0.813 41 H 0.162 0.838 42 H 0.175 0.825 43 H 0.217 0.783 44 H 0.092 0.908 45 H 0.054 0.946 46 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 3.978 -7.658 -12.301 15.026 hybrid contribution -0.551 1.517 0.042 1.614 sum 3.427 -6.142 -12.259 14.133 Atomic orbital electron populations 1.21765 0.95379 1.01640 1.00340 1.20575 0.93560 0.93434 0.86767 0.95465 1.22055 0.94857 1.00897 0.99207 1.21702 0.97262 1.00215 0.96574 1.21684 0.97283 0.81420 0.97816 0.89813 1.45720 1.29277 1.08320 1.50046 1.17864 0.84050 0.83573 0.79801 1.90567 1.25305 1.84191 1.41047 1.20422 0.94862 0.93539 0.95721 1.22494 0.95076 0.99535 0.99128 1.23088 0.98577 0.87413 0.93123 1.67837 1.08159 1.33148 1.08573 1.18888 0.91128 0.92118 0.95156 1.21656 0.96693 0.98683 1.00358 1.22367 0.92368 0.95370 0.95234 1.67748 1.35037 0.98945 1.18331 1.24502 0.90155 0.98542 0.87376 1.19665 0.98532 0.93647 1.01926 1.21754 0.85418 0.96912 0.95414 1.44341 1.01994 1.65088 1.20099 1.18531 1.00039 1.37319 0.84406 0.90428 1.25481 0.96826 0.96937 0.96051 1.70055 1.46512 1.30426 1.04651 0.87463 0.81151 0.85974 0.78724 1.21765 1.22381 1.18394 0.91805 0.94340 0.92664 0.92502 0.92353 0.90759 0.92401 0.76437 0.83544 0.81310 0.83767 0.82525 0.78327 0.90767 0.94636 0.92739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.18 8.02 37.16 0.30 -1.89 16 2 C 0.16 2.77 3.50 -67.60 -0.24 2.53 16 3 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 4 C -0.13 -1.73 5.21 -26.61 -0.14 -1.86 16 5 C -0.12 -1.53 5.58 -26.69 -0.15 -1.68 16 6 C 0.12 1.97 2.81 -67.81 -0.19 1.78 16 7 H 0.08 1.33 7.58 -51.93 -0.39 0.94 16 8 N -0.68 -10.54 4.87 -54.59 -0.27 -10.81 16 9 C 0.56 9.64 7.73 -12.26 -0.09 9.55 16 10 O -0.53 -10.42 13.28 5.35 0.07 -10.35 16 11 C -0.03 -0.50 5.94 -104.37 -0.62 -1.12 16 12 C -0.14 -1.79 9.60 -38.92 -0.37 -2.16 16 13 C 0.15 1.79 11.14 -17.45 -0.19 1.60 16 14 N -0.47 -6.64 10.33 -10.95 -0.11 -6.75 16 15 C 0.15 2.33 6.63 -84.88 -0.56 1.77 16 16 C -0.15 -2.00 10.08 -39.35 -0.40 -2.39 16 17 C 0.09 1.18 11.06 -17.99 -0.20 0.98 16 18 N -0.49 -7.80 10.31 -13.24 -0.14 -7.94 16 19 C 0.17 2.78 10.52 -17.07 -0.18 2.60 16 20 C -0.13 -2.17 5.77 -106.55 -0.61 -2.79 16 21 C 0.13 2.68 4.10 -3.71 -0.02 2.66 16 22 N -0.59 -12.39 2.46 -164.78 -0.41 -12.80 16 23 C -0.28 -6.95 8.56 -15.06 -0.13 -7.08 16 24 H 0.08 2.09 6.70 -52.48 -0.35 1.74 16 25 C 0.05 1.37 4.81 -17.43 -0.08 1.29 16 26 N -0.88 -25.94 13.97 55.49 0.78 -25.16 16 27 Si 0.84 21.13 27.14 -169.99 -4.61 16.51 16 28 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 29 H -0.30 -7.77 7.11 56.52 0.40 -7.37 16 30 H -0.26 -6.17 5.04 56.52 0.28 -5.88 16 31 H 0.06 1.18 7.68 -51.93 -0.40 0.78 16 32 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.05 0.93 7.42 -51.93 -0.39 0.54 16 34 H 0.06 0.73 6.40 -51.93 -0.33 0.40 16 35 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 36 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 37 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.40 5.35 4.95 -40.82 -0.20 5.15 16 39 H 0.15 1.48 6.56 -52.49 -0.34 1.14 16 40 H 0.17 1.32 8.06 -52.49 -0.42 0.90 16 41 H 0.14 1.50 8.06 -52.48 -0.42 1.08 16 42 H 0.16 1.46 8.06 -52.48 -0.42 1.04 16 43 H 0.20 3.52 5.09 -52.49 -0.27 3.25 16 44 H 0.07 1.79 6.67 -51.93 -0.35 1.44 16 45 H 0.04 0.73 6.61 -51.93 -0.34 0.39 16 46 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 LS Contribution 361.49 15.07 5.45 5.45 Total: -1.00 -32.14 361.49 -9.12 -41.26 By element: Atomic # 1 Polarization: 12.79 SS G_CDS: -6.00 Total: 6.79 kcal Atomic # 6 Polarization: 7.67 SS G_CDS: -3.88 Total: 3.79 kcal Atomic # 7 Polarization: -63.31 SS G_CDS: -0.15 Total: -63.46 kcal Atomic # 8 Polarization: -10.42 SS G_CDS: 0.07 Total: -10.35 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -4.61 Total: 16.51 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -32.14 -9.12 -41.26 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071705260.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.683 kcal (2) G-P(sol) polarization free energy of solvation -32.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.263 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds