Wall clock time and date at job start Sat Apr 11 2020 06:07:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08994 * 109.70603 * 2 1 4 4 C 1.53194 * 109.58921 * 239.64080 * 2 1 3 5 5 C 1.53031 * 109.31427 * 185.58136 * 4 2 1 6 6 C 1.53047 * 109.54180 * 61.36472 * 5 4 2 7 7 H 1.08997 * 109.52539 * 178.66590 * 6 5 4 8 8 N 1.46498 * 109.49363 * 58.58798 * 6 5 4 9 9 C 1.34773 * 119.99960 * 155.16232 * 8 6 5 10 10 O 1.21524 * 119.99918 * 0.02562 * 9 8 6 11 11 C 1.48001 * 120.00165 * 179.97438 * 9 8 6 12 12 C 1.38900 * 121.17052 * 354.12662 * 11 9 8 13 13 C 1.39345 * 119.67160 * 179.97438 * 12 11 9 14 14 N 1.31099 * 121.90562 * 0.02562 * 13 12 11 15 15 C 1.33284 * 121.61519 * 359.95935 * 14 13 12 16 16 C 1.40837 * 121.91075 * 180.02562 * 15 14 13 17 17 C 1.36158 * 118.77028 * 180.02562 * 16 15 14 18 18 N 1.32538 * 121.96063 * 359.97438 * 17 16 15 19 19 C 1.31343 * 122.60364 * 0.02562 * 18 17 16 20 20 C 1.40090 * 119.87218 * 359.96052 * 19 18 17 21 21 C 1.53187 * 109.30984 * 298.64007 * 6 5 4 22 22 N 1.46925 * 109.58259 * 120.35628 * 2 1 3 23 23 C 1.36935 * 120.63381 * 353.41204 * 22 2 1 24 24 H 1.08004 * 120.00039 * 37.34278 * 23 22 2 25 25 C 1.38815 * 120.00396 * 217.33257 * 23 22 2 26 26 N 1.31611 * 120.00327 * 214.67284 * 25 23 22 27 27 Si 1.86799 * 119.99761 * 34.68044 * 25 23 22 28 28 H 1.48500 * 109.47107 * 86.95432 * 27 25 23 29 29 H 1.48496 * 109.46988 * 206.95733 * 27 25 23 30 30 H 1.48505 * 109.47035 * 326.95665 * 27 25 23 31 31 H 1.09002 * 109.47553 * 299.64623 * 1 2 3 32 32 H 1.09002 * 109.47164 * 59.64696 * 1 2 3 33 33 H 1.09005 * 109.47272 * 179.64040 * 1 2 3 34 34 H 1.09002 * 109.49466 * 305.53524 * 4 2 1 35 35 H 1.09002 * 109.49673 * 65.59128 * 4 2 1 36 36 H 1.09001 * 109.45974 * 301.34591 * 5 4 2 37 37 H 1.08999 * 109.46107 * 181.38940 * 5 4 2 38 38 H 0.97007 * 120.00120 * 335.16336 * 8 6 5 39 39 H 1.07996 * 120.16124 * 359.97438 * 12 11 9 40 40 H 1.08002 * 119.04130 * 180.02562 * 13 12 11 41 41 H 1.08009 * 120.61326 * 0.04020 * 16 15 14 42 42 H 1.08003 * 119.02327 * 179.72227 * 17 16 15 43 43 H 1.07998 * 120.06109 * 180.02562 * 19 18 17 44 44 H 1.09000 * 109.58698 * 174.41977 * 21 6 5 45 45 H 1.09003 * 109.58312 * 294.69791 * 21 6 5 46 46 H 0.97005 * 120.00639 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0261 0.0000 4 6 2.0436 -0.7295 -1.2454 5 6 3.5675 -0.8481 -1.1700 6 6 3.9569 -1.6658 0.0637 7 1 5.0411 -1.7702 0.1042 8 7 3.3405 -2.9925 -0.0146 9 6 3.8952 -4.0329 0.6384 10 8 4.9063 -3.8703 1.2925 11 6 3.2722 -5.3730 0.5598 12 6 2.0530 -5.5628 -0.0782 13 6 1.4950 -6.8384 -0.1342 14 7 2.0877 -7.8781 0.4011 15 6 3.2588 -7.7688 1.0280 16 6 3.9012 -8.8815 1.6048 17 6 5.0962 -8.6966 2.2306 18 7 5.6690 -7.5041 2.3110 19 6 5.1283 -6.4232 1.7969 20 6 3.8984 -6.5071 1.1314 21 6 3.4649 -0.9470 1.3238 22 7 2.0224 -0.6996 1.1945 23 6 1.1535 -1.1134 2.1686 24 1 0.1805 -1.4956 1.8974 25 6 1.5234 -1.0420 3.5046 26 7 1.1129 -1.9623 4.3512 27 14 2.6036 0.3605 4.1010 28 1 1.7517 1.5211 4.4649 29 1 3.3746 -0.0802 5.2911 30 1 3.5431 0.7555 3.0209 31 1 -0.3634 0.5083 0.8931 32 1 -0.3633 0.5193 -0.8868 33 1 -0.3634 -1.0277 -0.0065 34 1 1.6029 -1.7254 -1.2912 35 1 1.7656 -0.1673 -2.1369 36 1 4.0061 0.1472 -1.0992 37 1 3.9378 -1.3449 -2.0667 38 1 2.5331 -3.1222 -0.5365 39 1 1.5401 -4.7258 -0.5284 40 1 0.5469 -6.9745 -0.6331 41 1 3.4543 -9.8633 1.5515 42 1 5.5902 -9.5463 2.6783 43 1 5.6314 -5.4717 1.8861 44 1 3.6516 -1.5718 2.1973 45 1 3.9921 0.0008 1.4331 46 1 1.3710 -1.9122 5.2850 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071705260.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:07:07 Heat of formation + Delta-G solvation = 42.250606 kcal Electronic energy + Delta-G solvation = -30400.651018 eV Core-core repulsion = 26483.289459 eV Total energy + Delta-G solvation = -3917.361559 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -42.46518 -40.98006 -39.32744 -39.01803 -35.94776 -34.76553 -34.46809 -32.63045 -32.50782 -32.47588 -31.15945 -28.01807 -26.89638 -26.27695 -25.22945 -24.61542 -24.04840 -22.29765 -21.99639 -20.60157 -19.70809 -19.20937 -18.55766 -18.08599 -17.42037 -16.96037 -16.86293 -16.34441 -16.32794 -15.78777 -15.67728 -15.53656 -15.34611 -15.22569 -14.92459 -14.57546 -14.47745 -14.33435 -14.09082 -13.86500 -13.79083 -13.44169 -13.06656 -12.96063 -12.70259 -12.56716 -12.45124 -12.13899 -11.76775 -11.72121 -11.59048 -11.49933 -11.33808 -11.11400 -10.89165 -10.53962 -10.45251 -10.36606 -10.07629 -9.57570 -8.62702 -8.22745 -5.42165 -1.15601 -0.40774 0.43081 1.32725 1.41104 1.45113 1.69157 1.97433 2.14335 2.48105 2.96962 2.98243 3.09445 3.33239 3.42726 3.44402 3.47955 3.60697 3.65480 3.95116 4.06539 4.15471 4.18226 4.25954 4.35468 4.39158 4.54955 4.62627 4.64377 4.69011 4.74584 4.82501 4.85219 4.88426 5.02235 5.04164 5.12562 5.16362 5.25539 5.30149 5.32633 5.51218 5.59120 5.60908 5.68524 5.95130 6.28284 6.46175 6.60720 6.84084 7.04185 7.12905 7.72691 8.19756 8.96094 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.012405 B = 0.004106 C = 0.003769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2256.528045 B = 6818.128853 C = 7427.870279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.152 3.848 3 H 0.032 0.968 4 C -0.122 4.122 5 C -0.111 4.111 6 C 0.129 3.871 7 H 0.082 0.918 8 N -0.675 5.675 9 C 0.554 3.446 10 O -0.567 6.567 11 C -0.063 4.063 12 C -0.124 4.124 13 C 0.157 3.843 14 N -0.476 5.476 15 C 0.133 3.867 16 C -0.144 4.144 17 C 0.083 3.917 18 N -0.509 5.509 19 C 0.139 3.861 20 C -0.150 4.150 21 C 0.132 3.868 22 N -0.600 5.600 23 C -0.233 4.233 24 H 0.061 0.939 25 C -0.007 4.007 26 N -0.929 5.929 27 Si 0.881 3.119 28 H -0.295 1.295 29 H -0.317 1.317 30 H -0.240 1.240 31 H 0.032 0.968 32 H 0.077 0.923 33 H 0.047 0.953 34 H 0.063 0.937 35 H 0.095 0.905 36 H 0.084 0.916 37 H 0.090 0.910 38 H 0.410 0.590 39 H 0.175 0.825 40 H 0.217 0.783 41 H 0.175 0.825 42 H 0.195 0.805 43 H 0.180 0.820 44 H 0.027 0.973 45 H 0.034 0.966 46 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.742 -7.050 -17.372 18.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.048 3.952 3 H 0.050 0.950 4 C -0.161 4.161 5 C -0.148 4.148 6 C 0.024 3.976 7 H 0.100 0.900 8 N -0.325 5.325 9 C 0.341 3.659 10 O -0.448 6.448 11 C -0.076 4.076 12 C -0.144 4.144 13 C -0.017 4.017 14 N -0.185 5.185 15 C 0.007 3.993 16 C -0.164 4.164 17 C -0.061 4.061 18 N -0.217 5.217 19 C -0.032 4.032 20 C -0.155 4.155 21 C 0.005 3.995 22 N -0.324 5.324 23 C -0.363 4.363 24 H 0.078 0.922 25 C -0.205 4.205 26 N -0.573 5.573 27 Si 0.710 3.290 28 H -0.223 1.223 29 H -0.246 1.246 30 H -0.164 1.164 31 H 0.051 0.949 32 H 0.096 0.904 33 H 0.066 0.934 34 H 0.082 0.918 35 H 0.113 0.887 36 H 0.102 0.898 37 H 0.109 0.891 38 H 0.249 0.751 39 H 0.192 0.808 40 H 0.233 0.767 41 H 0.192 0.808 42 H 0.211 0.789 43 H 0.197 0.803 44 H 0.045 0.955 45 H 0.052 0.948 46 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 2.936 -7.907 -16.325 18.375 hybrid contribution -0.305 1.574 1.159 1.978 sum 2.632 -6.333 -15.167 16.645 Atomic orbital electron populations 1.21718 0.94874 1.01306 1.00748 1.20900 0.94103 0.93768 0.86417 0.95050 1.21973 0.94771 1.01244 0.98065 1.21702 0.97178 1.00300 0.95663 1.21556 0.97200 0.81605 0.97285 0.89968 1.45644 1.29526 1.07727 1.49649 1.18250 0.83752 0.84605 0.79262 1.90556 1.26915 1.84881 1.42442 1.20414 0.96553 0.92583 0.98072 1.22895 0.93454 1.01008 0.97066 1.23882 0.99569 0.86375 0.91865 1.67933 1.07695 1.34039 1.08801 1.19229 0.91855 0.92225 0.95974 1.22035 0.96258 0.99378 0.98748 1.22948 0.92744 0.95229 0.95228 1.67698 1.35834 0.99784 1.18415 1.24216 0.91178 0.98406 0.89365 1.19774 0.98576 0.94719 1.02467 1.21626 0.85188 0.96485 0.96157 1.44481 1.01700 1.65851 1.20410 1.18517 0.99319 1.33655 0.84783 0.92179 1.25942 0.98871 0.98791 0.96892 1.70150 1.50025 1.32576 1.04515 0.86769 0.80097 0.83971 0.78161 1.22292 1.24565 1.16369 0.94894 0.90433 0.93393 0.91798 0.88677 0.89789 0.89110 0.75103 0.80754 0.76666 0.80792 0.78859 0.80349 0.95451 0.94822 0.93686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.85 8.02 71.98 0.58 -3.27 16 2 C 0.15 4.71 3.50 44.98 0.16 4.87 16 3 H 0.03 0.99 8.14 -2.39 -0.02 0.97 16 4 C -0.12 -2.59 5.21 30.67 0.16 -2.43 16 5 C -0.11 -2.33 5.58 30.62 0.17 -2.16 16 6 C 0.13 3.92 2.81 45.07 0.13 4.05 16 7 H 0.08 2.56 7.58 -2.39 -0.02 2.54 16 8 N -0.67 -19.98 4.87 -444.91 -2.17 -22.15 16 9 C 0.55 19.46 7.73 86.83 0.67 20.13 16 10 O -0.57 -23.62 13.28 -3.79 -0.05 -23.68 16 11 C -0.06 -1.98 5.94 -19.70 -0.12 -2.10 16 12 C -0.12 -2.85 9.60 22.70 0.22 -2.63 16 13 C 0.16 3.22 11.14 85.07 0.95 4.17 16 14 N -0.48 -12.44 10.33 -188.56 -1.95 -14.39 16 15 C 0.13 3.94 6.63 40.45 0.27 4.21 16 16 C -0.14 -3.56 10.08 22.42 0.23 -3.33 16 17 C 0.08 2.09 11.06 84.10 0.93 3.02 16 18 N -0.51 -16.69 10.31 -195.80 -2.02 -18.71 16 19 C 0.14 4.98 10.52 85.22 0.90 5.87 16 20 C -0.15 -5.05 5.77 -21.11 -0.12 -5.17 16 21 C 0.13 5.34 4.10 86.36 0.35 5.69 16 22 N -0.60 -24.56 2.46 -675.23 -1.66 -26.22 16 23 C -0.23 -11.90 8.56 84.03 0.72 -11.18 16 24 H 0.06 3.28 6.70 -2.91 -0.02 3.26 16 25 C -0.01 -0.41 4.81 84.86 0.41 -0.01 16 26 N -0.93 -57.64 13.97 21.65 0.30 -57.34 16 27 Si 0.88 45.23 27.14 68.60 1.86 47.09 16 28 H -0.30 -15.16 7.11 99.48 0.71 -14.45 16 29 H -0.32 -17.25 7.11 99.48 0.71 -16.54 16 30 H -0.24 -11.33 5.04 99.48 0.50 -10.83 16 31 H 0.03 1.16 7.68 -2.39 -0.02 1.15 16 32 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 33 H 0.05 1.49 7.42 -2.38 -0.02 1.47 16 34 H 0.06 1.30 6.40 -2.39 -0.02 1.29 16 35 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 36 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 37 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 38 H 0.41 9.86 4.95 -92.70 -0.46 9.40 16 39 H 0.18 2.90 6.56 -2.91 -0.02 2.88 16 40 H 0.22 2.29 8.06 -2.91 -0.02 2.26 16 41 H 0.17 3.13 8.06 -2.91 -0.02 3.11 16 42 H 0.19 3.22 8.06 -2.91 -0.02 3.20 16 43 H 0.18 7.01 5.09 -2.91 -0.01 7.00 16 44 H 0.03 1.36 6.67 -2.39 -0.02 1.34 16 45 H 0.03 1.37 6.61 -2.39 -0.02 1.35 16 46 H 0.25 15.51 8.31 -92.70 -0.77 14.73 16 Total: -1.00 -76.58 361.49 1.27 -75.31 By element: Atomic # 1 Polarization: 19.99 SS G_CDS: 0.36 Total: 20.36 kcal Atomic # 6 Polarization: 13.14 SS G_CDS: 6.59 Total: 19.73 kcal Atomic # 7 Polarization: -131.32 SS G_CDS: -7.49 Total: -138.81 kcal Atomic # 8 Polarization: -23.62 SS G_CDS: -0.05 Total: -23.68 kcal Atomic # 14 Polarization: 45.23 SS G_CDS: 1.86 Total: 47.09 kcal Total: -76.58 1.27 -75.31 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071705260.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.558 kcal (2) G-P(sol) polarization free energy of solvation -76.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.308 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds