Wall clock time and date at job start Sat Apr 11 2020 06:07:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08999 * 109.58559 * 2 1 4 4 C 1.53189 * 109.58825 * 120.43174 * 2 1 3 5 5 C 1.53037 * 109.31510 * 174.42638 * 4 2 1 6 6 C 1.53046 * 109.53657 * 298.63271 * 5 4 2 7 7 H 1.09001 * 109.49978 * 181.31825 * 6 5 4 8 8 N 1.46505 * 109.52230 * 301.39934 * 6 5 4 9 9 C 1.34777 * 119.99600 * 204.85400 * 8 6 5 10 10 O 1.21546 * 120.00289 * 0.02562 * 9 8 6 11 11 C 1.47924 * 119.99661 * 180.02562 * 9 8 6 12 12 C 1.38931 * 119.84533 * 179.72915 * 11 9 8 13 13 C 1.40647 * 117.38934 * 179.75029 * 12 11 9 14 14 C 1.40254 * 122.03830 * 180.23917 * 13 12 11 15 15 C 1.36265 * 119.47376 * 180.31753 * 14 13 12 16 16 C 1.39318 * 120.87690 * 359.96211 * 15 14 13 17 17 C 1.36235 * 121.15900 * 0.02562 * 16 15 14 18 18 C 1.40337 * 119.67845 * 0.02562 * 17 16 15 19 19 N 1.33810 * 121.62472 * 179.97438 * 18 17 16 20 20 N 1.28444 * 121.68592 * 180.02562 * 19 18 17 21 21 C 1.53193 * 109.31330 * 61.36345 * 6 5 4 22 22 N 1.46925 * 109.58778 * 239.72283 * 2 1 3 23 23 C 1.36935 * 120.63108 * 6.61959 * 22 2 1 24 24 H 1.08003 * 120.00489 * 329.22256 * 23 22 2 25 25 C 1.38822 * 119.99876 * 149.21942 * 23 22 2 26 26 N 1.31620 * 119.99894 * 345.96110 * 25 23 22 27 27 Si 1.86801 * 119.99668 * 165.96050 * 25 23 22 28 28 H 1.48502 * 109.47029 * 60.00488 * 27 25 23 29 29 H 1.48504 * 109.46699 * 180.02562 * 27 25 23 30 30 H 1.48497 * 109.47482 * 300.00186 * 27 25 23 31 31 H 1.09001 * 109.47198 * 180.27684 * 1 2 3 32 32 H 1.09003 * 109.47671 * 300.28004 * 1 2 3 33 33 H 1.09000 * 109.47456 * 60.28285 * 1 2 3 34 34 H 1.09001 * 109.49255 * 294.37195 * 4 2 1 35 35 H 1.08998 * 109.49959 * 54.47238 * 4 2 1 36 36 H 1.09002 * 109.46211 * 178.61392 * 5 4 2 37 37 H 1.09003 * 109.46259 * 58.65080 * 5 4 2 38 38 H 0.96993 * 119.99771 * 24.85073 * 8 6 5 39 39 H 1.08008 * 121.30490 * 359.97438 * 12 11 9 40 40 H 1.08000 * 120.25889 * 0.28015 * 14 13 12 41 41 H 1.08003 * 119.56165 * 179.97438 * 15 14 13 42 42 H 1.08001 * 119.42663 * 180.02562 * 16 15 14 43 43 H 1.07999 * 120.16170 * 179.97438 * 17 16 15 44 44 H 1.08999 * 109.58888 * 185.57780 * 21 6 5 45 45 H 1.09005 * 109.58336 * 65.15108 * 21 6 5 46 46 H 0.96997 * 119.99522 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8953 1.0269 0.0000 4 6 2.0435 -0.7310 1.2444 5 6 3.5674 -0.8494 1.1690 6 6 3.9569 -1.6655 -0.0657 7 1 5.0412 -1.7694 -0.1060 8 7 3.3411 -2.9927 0.0104 9 6 3.8966 -4.0318 -0.6440 10 8 4.9086 -3.8679 -1.2969 11 6 3.2745 -5.3717 -0.5676 12 6 3.8466 -6.4394 -1.2480 13 6 3.2155 -7.6913 -1.1353 14 6 3.7122 -8.8353 -1.7768 15 6 3.0552 -10.0209 -1.6370 16 6 1.8987 -10.1108 -0.8654 17 6 1.3895 -9.0193 -0.2288 18 6 2.0367 -7.7799 -0.3490 19 7 1.5704 -6.6829 0.2589 20 7 2.1615 -5.5479 0.1493 21 6 3.4650 -0.9452 -1.3250 22 7 2.0225 -0.6979 -1.1954 23 6 1.1537 -1.1098 -2.1704 24 1 0.1441 -1.3917 -1.9102 25 6 1.5707 -1.1651 -3.4934 26 7 2.6877 -0.5712 -3.8567 27 14 0.5463 -2.0823 -4.7579 28 1 -0.8069 -1.4752 -4.8333 29 1 1.2040 -1.9933 -6.0864 30 1 0.4278 -3.5078 -4.3593 31 1 -0.3634 -1.0277 0.0050 32 1 -0.3634 0.5182 0.8875 33 1 -0.3634 0.5094 -0.8925 34 1 1.7660 -0.1696 2.1365 35 1 1.6030 -1.7270 1.2890 36 1 3.9378 -1.3475 2.0651 37 1 4.0061 0.1460 1.0995 38 1 2.5338 -3.1235 0.5318 39 1 4.7429 -6.3138 -1.8375 40 1 4.6079 -8.7769 -2.3773 41 1 3.4362 -10.9027 -2.1308 42 1 1.3969 -11.0624 -0.7703 43 1 0.4916 -9.1072 0.3650 44 1 3.6518 -1.5688 -2.1993 45 1 3.9903 0.0040 -1.4317 46 1 2.9791 -0.6101 -4.7810 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071728059.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:07:23 Heat of formation + Delta-G solvation = 66.131839 kcal Electronic energy + Delta-G solvation = -29974.385922 eV Core-core repulsion = 26058.059932 eV Total energy + Delta-G solvation = -3916.325991 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.43953 -39.47387 -38.01093 -37.39722 -34.19331 -33.75849 -32.71614 -31.96209 -30.87521 -30.22616 -29.80483 -26.31516 -25.39825 -25.17605 -24.64826 -22.64948 -22.13812 -21.50152 -20.37184 -18.88887 -18.72600 -18.46767 -17.01377 -16.33928 -16.16368 -15.47444 -15.36535 -14.93488 -14.84735 -14.53968 -14.21699 -14.02387 -13.83248 -13.70841 -13.44859 -13.12694 -12.81532 -12.58945 -12.50592 -12.42726 -12.28062 -11.87685 -11.30578 -11.17587 -11.10003 -10.94382 -10.84199 -10.82486 -10.67995 -10.34356 -10.28864 -9.92970 -9.88591 -9.67369 -9.57769 -9.44976 -9.40433 -8.64236 -8.41063 -8.35585 -6.53135 -5.71018 -3.15727 -0.21959 0.27428 1.51001 2.33712 3.27854 3.40055 3.43676 3.46194 3.47498 3.86307 3.91538 4.10990 4.33702 4.43862 4.53211 4.54013 4.75504 4.86272 5.00951 5.31422 5.36384 5.40500 5.44816 5.45796 5.56391 5.57045 5.60189 5.65264 5.92145 5.97179 6.03368 6.06647 6.17363 6.20282 6.37366 6.39106 6.41894 6.50187 6.55857 6.68371 6.71886 6.91708 7.11456 7.19113 7.39140 7.70376 7.88696 8.02693 8.47210 8.54457 8.66475 9.28490 9.92269 10.49196 11.37099 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.011450 B = 0.003899 C = 0.003489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2444.734452 B = 7180.280113 C = 8024.285584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.166 3.834 3 H 0.025 0.975 4 C -0.133 4.133 5 C -0.118 4.118 6 C 0.115 3.885 7 H 0.078 0.922 8 N -0.674 5.674 9 C 0.574 3.426 10 O -0.538 6.538 11 C 0.007 3.993 12 C -0.032 4.032 13 C -0.075 4.075 14 C -0.093 4.093 15 C -0.102 4.102 16 C -0.096 4.096 17 C -0.079 4.079 18 C 0.068 3.932 19 N -0.203 5.203 20 N -0.185 5.185 21 C 0.163 3.837 22 N -0.582 5.582 23 C -0.247 4.247 24 H 0.067 0.933 25 C 0.007 3.993 26 N -0.900 5.900 27 Si 0.894 3.106 28 H -0.282 1.282 29 H -0.291 1.291 30 H -0.287 1.287 31 H 0.052 0.948 32 H 0.037 0.963 33 H 0.060 0.940 34 H 0.054 0.946 35 H 0.058 0.942 36 H 0.052 0.948 37 H 0.072 0.928 38 H 0.407 0.593 39 H 0.167 0.833 40 H 0.140 0.860 41 H 0.134 0.866 42 H 0.136 0.864 43 H 0.144 0.856 44 H 0.094 0.906 45 H 0.028 0.972 46 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.638 -15.978 9.006 18.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.059 3.941 3 H 0.043 0.957 4 C -0.172 4.172 5 C -0.156 4.156 6 C 0.009 3.991 7 H 0.096 0.904 8 N -0.323 5.323 9 C 0.356 3.644 10 O -0.415 6.415 11 C -0.126 4.126 12 C -0.063 4.063 13 C -0.083 4.083 14 C -0.112 4.112 15 C -0.121 4.121 16 C -0.117 4.117 17 C -0.100 4.100 18 C -0.059 4.059 19 N -0.059 5.059 20 N -0.043 5.043 21 C 0.036 3.964 22 N -0.305 5.305 23 C -0.376 4.376 24 H 0.084 0.916 25 C -0.192 4.192 26 N -0.544 5.544 27 Si 0.725 3.275 28 H -0.208 1.208 29 H -0.217 1.217 30 H -0.214 1.214 31 H 0.071 0.929 32 H 0.056 0.944 33 H 0.079 0.921 34 H 0.072 0.928 35 H 0.076 0.924 36 H 0.071 0.929 37 H 0.091 0.909 38 H 0.244 0.756 39 H 0.184 0.816 40 H 0.158 0.842 41 H 0.152 0.848 42 H 0.154 0.846 43 H 0.162 0.838 44 H 0.113 0.887 45 H 0.046 0.954 46 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 1.354 -15.065 9.283 17.747 hybrid contribution 0.125 -1.185 -1.542 1.949 sum 1.480 -16.250 7.742 18.060 Atomic orbital electron populations 1.21796 0.96098 1.01316 1.00133 1.20465 0.92955 0.93566 0.87080 0.95725 1.22085 0.95051 1.00986 0.99087 1.21687 0.97199 1.00089 0.96628 1.21921 0.97001 0.81438 0.98719 0.90401 1.45736 1.29271 1.08096 1.49212 1.17333 0.83992 0.82735 0.80369 1.90779 1.25023 1.84106 1.41637 1.22745 0.95048 0.96669 0.98184 1.22608 0.99150 0.90336 0.94204 1.18823 0.95893 0.95035 0.98544 1.21051 1.00258 0.91324 0.98522 1.21087 0.95140 0.98025 0.97864 1.21068 0.95815 0.98941 0.95858 1.20798 0.99961 0.89789 0.99406 1.20454 0.93718 0.95836 0.95914 1.73877 1.22634 0.94182 1.15232 1.73227 1.04517 1.15221 1.11345 1.21170 0.83965 0.97038 0.94180 1.44014 1.02610 1.64889 1.19016 1.19039 0.95380 1.37444 0.85784 0.91584 1.25065 0.97692 0.99423 0.97010 1.69965 1.23564 1.44193 1.16717 0.86498 0.79861 0.80040 0.81133 1.20846 1.21653 1.21426 0.92871 0.94425 0.92084 0.92753 0.92350 0.92919 0.90948 0.75620 0.81598 0.84210 0.84781 0.84612 0.83790 0.88736 0.95399 0.93689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.56 7.96 37.15 0.30 -2.26 16 2 C 0.17 3.35 3.50 -67.60 -0.24 3.12 16 3 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 4 C -0.13 -2.21 5.21 -26.61 -0.14 -2.35 16 5 C -0.12 -1.91 5.59 -26.69 -0.15 -2.06 16 6 C 0.11 2.23 2.81 -67.80 -0.19 2.04 16 7 H 0.08 1.51 7.58 -51.93 -0.39 1.12 16 8 N -0.67 -12.97 4.91 -54.60 -0.27 -13.24 16 9 C 0.57 11.45 7.77 -12.29 -0.10 11.36 16 10 O -0.54 -11.90 16.02 5.33 0.09 -11.81 16 11 C 0.01 0.13 6.82 -82.90 -0.57 -0.43 16 12 C -0.03 -0.48 9.51 -38.42 -0.37 -0.85 16 13 C -0.07 -0.97 5.75 -106.80 -0.61 -1.58 16 14 C -0.09 -0.87 9.81 -39.53 -0.39 -1.26 16 15 C -0.10 -0.75 9.96 -39.89 -0.40 -1.15 16 16 C -0.10 -0.72 9.94 -39.90 -0.40 -1.12 16 17 C -0.08 -0.79 10.00 -39.51 -0.40 -1.18 16 18 C 0.07 0.94 6.69 -84.79 -0.57 0.37 16 19 N -0.20 -3.32 11.55 32.24 0.37 -2.94 16 20 N -0.19 -3.29 10.70 33.24 0.36 -2.94 16 21 C 0.16 3.92 4.87 -3.71 -0.02 3.90 16 22 N -0.58 -14.12 2.90 -164.77 -0.48 -14.60 16 23 C -0.25 -6.67 8.54 -15.06 -0.13 -6.80 16 24 H 0.07 1.77 6.27 -52.48 -0.33 1.44 16 25 C 0.01 0.20 4.97 -17.43 -0.09 0.11 16 26 N -0.90 -26.62 11.21 55.49 0.62 -26.00 16 27 Si 0.89 22.59 29.58 -169.99 -5.03 17.56 16 28 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 29 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 30 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 31 H 0.05 1.02 7.44 -51.93 -0.39 0.64 16 32 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 33 H 0.06 1.25 7.63 -51.93 -0.40 0.86 16 34 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.06 1.00 6.41 -51.93 -0.33 0.66 16 36 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 38 H 0.41 7.53 6.11 -40.82 -0.25 7.28 16 39 H 0.17 2.21 7.69 -52.48 -0.40 1.81 16 40 H 0.14 0.98 8.06 -52.49 -0.42 0.56 16 41 H 0.13 0.59 8.06 -52.48 -0.42 0.16 16 42 H 0.14 0.59 8.06 -52.49 -0.42 0.16 16 43 H 0.14 1.19 8.06 -52.49 -0.42 0.76 16 44 H 0.09 2.67 6.17 -51.93 -0.32 2.35 16 45 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 46 H 0.25 7.36 8.31 -40.82 -0.34 7.02 16 LS Contribution 372.53 15.07 5.61 5.61 Total: -1.00 -32.93 372.53 -9.33 -42.27 By element: Atomic # 1 Polarization: 12.41 SS G_CDS: -6.17 Total: 6.24 kcal Atomic # 6 Polarization: 4.29 SS G_CDS: -4.44 Total: -0.15 kcal Atomic # 7 Polarization: -60.33 SS G_CDS: 0.60 Total: -59.72 kcal Atomic # 8 Polarization: -11.90 SS G_CDS: 0.09 Total: -11.81 kcal Atomic # 14 Polarization: 22.59 SS G_CDS: -5.03 Total: 17.56 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -32.93 -9.33 -42.27 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071728059.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.400 kcal (2) G-P(sol) polarization free energy of solvation -32.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.268 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds