Wall clock time and date at job start Sat Apr 11 2020 06:07:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08999 * 109.58559 * 2 1 4 4 C 1.53189 * 109.58825 * 120.43174 * 2 1 3 5 5 C 1.53037 * 109.31510 * 174.42638 * 4 2 1 6 6 C 1.53046 * 109.53657 * 298.63271 * 5 4 2 7 7 H 1.09001 * 109.49978 * 181.31825 * 6 5 4 8 8 N 1.46505 * 109.52230 * 301.39934 * 6 5 4 9 9 C 1.34777 * 119.99600 * 204.85400 * 8 6 5 10 10 O 1.21546 * 120.00289 * 0.02562 * 9 8 6 11 11 C 1.47924 * 119.99661 * 180.02562 * 9 8 6 12 12 C 1.38931 * 119.84533 * 179.72915 * 11 9 8 13 13 C 1.40647 * 117.38934 * 179.75029 * 12 11 9 14 14 C 1.40254 * 122.03830 * 180.23917 * 13 12 11 15 15 C 1.36265 * 119.47376 * 180.31753 * 14 13 12 16 16 C 1.39318 * 120.87690 * 359.96211 * 15 14 13 17 17 C 1.36235 * 121.15900 * 0.02562 * 16 15 14 18 18 C 1.40337 * 119.67845 * 0.02562 * 17 16 15 19 19 N 1.33810 * 121.62472 * 179.97438 * 18 17 16 20 20 N 1.28444 * 121.68592 * 180.02562 * 19 18 17 21 21 C 1.53193 * 109.31330 * 61.36345 * 6 5 4 22 22 N 1.46925 * 109.58778 * 239.72283 * 2 1 3 23 23 C 1.36935 * 120.63108 * 6.61959 * 22 2 1 24 24 H 1.08003 * 120.00489 * 329.22256 * 23 22 2 25 25 C 1.38822 * 119.99876 * 149.21942 * 23 22 2 26 26 N 1.31620 * 119.99894 * 345.96110 * 25 23 22 27 27 Si 1.86801 * 119.99668 * 165.96050 * 25 23 22 28 28 H 1.48502 * 109.47029 * 60.00488 * 27 25 23 29 29 H 1.48504 * 109.46699 * 180.02562 * 27 25 23 30 30 H 1.48497 * 109.47482 * 300.00186 * 27 25 23 31 31 H 1.09001 * 109.47198 * 180.27684 * 1 2 3 32 32 H 1.09003 * 109.47671 * 300.28004 * 1 2 3 33 33 H 1.09000 * 109.47456 * 60.28285 * 1 2 3 34 34 H 1.09001 * 109.49255 * 294.37195 * 4 2 1 35 35 H 1.08998 * 109.49959 * 54.47238 * 4 2 1 36 36 H 1.09002 * 109.46211 * 178.61392 * 5 4 2 37 37 H 1.09003 * 109.46259 * 58.65080 * 5 4 2 38 38 H 0.96993 * 119.99771 * 24.85073 * 8 6 5 39 39 H 1.08008 * 121.30490 * 359.97438 * 12 11 9 40 40 H 1.08000 * 120.25889 * 0.28015 * 14 13 12 41 41 H 1.08003 * 119.56165 * 179.97438 * 15 14 13 42 42 H 1.08001 * 119.42663 * 180.02562 * 16 15 14 43 43 H 1.07999 * 120.16170 * 179.97438 * 17 16 15 44 44 H 1.08999 * 109.58888 * 185.57780 * 21 6 5 45 45 H 1.09005 * 109.58336 * 65.15108 * 21 6 5 46 46 H 0.96997 * 119.99522 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8953 1.0269 0.0000 4 6 2.0435 -0.7310 1.2444 5 6 3.5674 -0.8494 1.1690 6 6 3.9569 -1.6655 -0.0657 7 1 5.0412 -1.7694 -0.1060 8 7 3.3411 -2.9927 0.0104 9 6 3.8966 -4.0318 -0.6440 10 8 4.9086 -3.8679 -1.2969 11 6 3.2745 -5.3717 -0.5676 12 6 3.8466 -6.4394 -1.2480 13 6 3.2155 -7.6913 -1.1353 14 6 3.7122 -8.8353 -1.7768 15 6 3.0552 -10.0209 -1.6370 16 6 1.8987 -10.1108 -0.8654 17 6 1.3895 -9.0193 -0.2288 18 6 2.0367 -7.7799 -0.3490 19 7 1.5704 -6.6829 0.2589 20 7 2.1615 -5.5479 0.1493 21 6 3.4650 -0.9452 -1.3250 22 7 2.0225 -0.6979 -1.1954 23 6 1.1537 -1.1098 -2.1704 24 1 0.1441 -1.3917 -1.9102 25 6 1.5707 -1.1651 -3.4934 26 7 2.6877 -0.5712 -3.8567 27 14 0.5463 -2.0823 -4.7579 28 1 -0.8069 -1.4752 -4.8333 29 1 1.2040 -1.9933 -6.0864 30 1 0.4278 -3.5078 -4.3593 31 1 -0.3634 -1.0277 0.0050 32 1 -0.3634 0.5182 0.8875 33 1 -0.3634 0.5094 -0.8925 34 1 1.7660 -0.1696 2.1365 35 1 1.6030 -1.7270 1.2890 36 1 3.9378 -1.3475 2.0651 37 1 4.0061 0.1460 1.0995 38 1 2.5338 -3.1235 0.5318 39 1 4.7429 -6.3138 -1.8375 40 1 4.6079 -8.7769 -2.3773 41 1 3.4362 -10.9027 -2.1308 42 1 1.3969 -11.0624 -0.7703 43 1 0.4916 -9.1072 0.3650 44 1 3.6518 -1.5688 -2.1993 45 1 3.9903 0.0040 -1.4317 46 1 2.9791 -0.6101 -4.7810 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071728059.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:07:22 Heat of formation + Delta-G solvation = 44.283837 kcal Electronic energy + Delta-G solvation = -29975.333323 eV Core-core repulsion = 26058.059932 eV Total energy + Delta-G solvation = -3917.273391 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -42.49819 -40.96716 -39.30244 -38.67478 -35.87589 -34.83533 -34.54638 -33.06415 -32.06094 -31.76807 -31.29769 -27.94402 -26.94524 -26.35780 -25.95306 -23.91859 -23.54505 -22.77940 -22.01786 -20.41906 -19.81883 -19.74695 -18.26002 -18.04037 -17.29182 -16.99033 -16.78325 -16.47842 -15.92088 -15.73262 -15.67696 -15.48088 -15.40343 -15.06033 -14.74811 -14.49895 -14.45819 -14.04106 -13.69433 -13.52958 -13.39035 -13.02239 -13.01389 -12.89124 -12.65210 -12.60083 -12.44143 -12.21121 -12.16177 -12.11214 -11.91549 -11.58764 -11.29500 -11.13167 -11.07204 -10.97042 -10.54942 -10.48075 -10.03918 -9.47342 -8.55735 -7.84088 -5.29890 -1.18218 -0.75111 0.62549 1.26406 1.34764 1.37383 1.42625 1.97673 2.18495 2.46411 2.72731 2.81702 3.17876 3.30678 3.32288 3.45411 3.63028 3.72065 3.83185 4.00436 4.09323 4.10771 4.17104 4.19054 4.41763 4.47711 4.51735 4.62692 4.68335 4.74039 4.80942 4.89689 4.95389 5.02382 5.05814 5.06698 5.10533 5.23107 5.25689 5.29963 5.31970 5.55196 5.59269 5.63081 5.69538 5.71537 5.72726 6.43907 6.48876 7.10913 7.17976 7.35077 7.91658 8.42569 9.20831 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.011450 B = 0.003899 C = 0.003489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2444.734452 B = 7180.280113 C = 8024.285584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.155 3.845 3 H 0.020 0.980 4 C -0.122 4.122 5 C -0.110 4.110 6 C 0.122 3.878 7 H 0.075 0.925 8 N -0.671 5.671 9 C 0.569 3.431 10 O -0.572 6.572 11 C -0.025 4.025 12 C -0.036 4.036 13 C -0.084 4.084 14 C -0.104 4.104 15 C -0.081 4.081 16 C -0.070 4.070 17 C -0.098 4.098 18 C 0.050 3.950 19 N -0.224 5.224 20 N -0.211 5.211 21 C 0.173 3.827 22 N -0.595 5.595 23 C -0.237 4.237 24 H 0.068 0.932 25 C -0.049 4.049 26 N -0.933 5.933 27 Si 0.946 3.054 28 H -0.269 1.269 29 H -0.295 1.295 30 H -0.294 1.294 31 H 0.045 0.955 32 H 0.076 0.924 33 H 0.036 0.964 34 H 0.092 0.908 35 H 0.055 0.945 36 H 0.084 0.916 37 H 0.081 0.919 38 H 0.411 0.589 39 H 0.172 0.828 40 H 0.163 0.837 41 H 0.179 0.821 42 H 0.181 0.819 43 H 0.159 0.841 44 H 0.046 0.954 45 H 0.006 0.994 46 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.610 -19.442 10.547 22.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.050 3.950 3 H 0.038 0.962 4 C -0.161 4.161 5 C -0.148 4.148 6 C 0.017 3.983 7 H 0.093 0.907 8 N -0.320 5.320 9 C 0.353 3.647 10 O -0.452 6.452 11 C -0.159 4.159 12 C -0.066 4.066 13 C -0.092 4.092 14 C -0.123 4.123 15 C -0.100 4.100 16 C -0.090 4.090 17 C -0.119 4.119 18 C -0.078 4.078 19 N -0.080 5.080 20 N -0.069 5.069 21 C 0.046 3.954 22 N -0.319 5.319 23 C -0.368 4.368 24 H 0.085 0.915 25 C -0.245 4.245 26 N -0.579 5.579 27 Si 0.776 3.224 28 H -0.195 1.195 29 H -0.221 1.221 30 H -0.221 1.221 31 H 0.064 0.936 32 H 0.095 0.905 33 H 0.055 0.945 34 H 0.111 0.889 35 H 0.073 0.927 36 H 0.103 0.897 37 H 0.100 0.900 38 H 0.248 0.752 39 H 0.190 0.810 40 H 0.180 0.820 41 H 0.196 0.804 42 H 0.198 0.802 43 H 0.176 0.824 44 H 0.065 0.935 45 H 0.024 0.976 46 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 0.291 -18.518 10.872 21.476 hybrid contribution 0.403 -0.382 -2.017 2.092 sum 0.694 -18.900 8.855 20.883 Atomic orbital electron populations 1.21719 0.94948 1.01027 1.00858 1.20764 0.94043 0.93371 0.86826 0.96182 1.21976 0.94971 1.00786 0.98375 1.21673 0.97136 1.00162 0.95794 1.21704 0.96707 0.81722 0.98195 0.90716 1.45702 1.29356 1.07832 1.49116 1.17761 0.83604 0.83844 0.79465 1.90734 1.26509 1.84944 1.42977 1.22430 0.96417 0.96080 1.00979 1.22777 0.99318 0.90810 0.93674 1.19095 0.95751 0.95396 0.98960 1.21407 1.01470 0.90778 0.98642 1.21686 0.93927 0.98446 0.95928 1.21661 0.94936 0.99613 0.92836 1.21116 1.00856 0.89038 1.00864 1.20946 0.94459 0.96379 0.95971 1.73724 1.23159 0.94699 1.16368 1.73099 1.04925 1.16399 1.12487 1.20851 0.84202 0.95516 0.94802 1.44218 1.02281 1.65594 1.19800 1.19303 0.95604 1.35573 0.86329 0.91452 1.25690 0.98910 1.01024 0.98829 1.70125 1.25259 1.46316 1.16248 0.85657 0.79173 0.78555 0.79035 1.19477 1.22139 1.22124 0.93624 0.90493 0.94515 0.88937 0.92666 0.89749 0.90020 0.75153 0.81008 0.81983 0.80390 0.80195 0.82365 0.93520 0.97627 0.94670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.69 7.96 71.98 0.57 -4.12 16 2 C 0.16 6.19 3.50 44.97 0.16 6.35 16 3 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 4 C -0.12 -3.82 5.21 30.67 0.16 -3.66 16 5 C -0.11 -3.39 5.59 30.62 0.17 -3.22 16 6 C 0.12 4.91 2.81 45.07 0.13 5.03 16 7 H 0.07 3.03 7.58 -2.39 -0.02 3.01 16 8 N -0.67 -26.90 4.91 -444.93 -2.18 -29.08 16 9 C 0.57 24.19 7.77 86.81 0.67 24.87 16 10 O -0.57 -27.09 16.02 -3.86 -0.06 -27.15 16 11 C -0.03 -0.96 6.82 41.62 0.28 -0.67 16 12 C -0.04 -1.11 9.51 23.02 0.22 -0.90 16 13 C -0.08 -2.12 5.75 -21.28 -0.12 -2.24 16 14 C -0.10 -1.64 9.81 22.30 0.22 -1.42 16 15 C -0.08 -0.75 9.96 22.07 0.22 -0.53 16 16 C -0.07 -0.68 9.94 22.06 0.22 -0.46 16 17 C -0.10 -1.69 10.00 22.31 0.22 -1.47 16 18 C 0.05 1.35 6.69 40.28 0.27 1.61 16 19 N -0.22 -7.47 11.55 -51.93 -0.60 -8.07 16 20 N -0.21 -7.87 10.70 -48.75 -0.52 -8.39 16 21 C 0.17 8.79 4.87 86.36 0.42 9.21 16 22 N -0.60 -29.79 2.90 -675.22 -1.96 -31.75 16 23 C -0.24 -13.26 8.54 84.04 0.72 -12.55 16 24 H 0.07 3.69 6.27 -2.91 -0.02 3.68 16 25 C -0.05 -2.90 4.97 84.86 0.42 -2.48 16 26 N -0.93 -58.25 11.21 21.65 0.24 -58.01 16 27 Si 0.95 48.18 29.58 68.60 2.03 50.21 16 28 H -0.27 -12.99 7.11 99.48 0.71 -12.29 16 29 H -0.30 -15.11 7.11 99.48 0.71 -14.40 16 30 H -0.29 -15.11 7.11 99.48 0.71 -14.40 16 31 H 0.04 1.72 7.44 -2.39 -0.02 1.70 16 32 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 33 H 0.04 1.49 7.63 -2.39 -0.02 1.47 16 34 H 0.09 2.27 8.14 -2.39 -0.02 2.25 16 35 H 0.05 1.79 6.41 -2.39 -0.02 1.78 16 36 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 37 H 0.08 2.41 8.14 -2.39 -0.02 2.39 16 38 H 0.41 15.64 6.11 -92.71 -0.57 15.08 16 39 H 0.17 4.86 7.69 -2.91 -0.02 4.84 16 40 H 0.16 1.77 8.06 -2.91 -0.02 1.75 16 41 H 0.18 0.24 8.06 -2.91 -0.02 0.22 16 42 H 0.18 0.26 8.06 -2.91 -0.02 0.23 16 43 H 0.16 2.20 8.06 -2.91 -0.02 2.17 16 44 H 0.05 2.82 6.17 -2.39 -0.01 2.80 16 45 H 0.01 0.31 8.14 -2.38 -0.02 0.29 16 46 H 0.24 15.05 8.31 -92.71 -0.77 14.28 16 Total: -1.00 -79.25 372.53 2.35 -76.90 By element: Atomic # 1 Polarization: 21.53 SS G_CDS: 0.45 Total: 21.97 kcal Atomic # 6 Polarization: 8.41 SS G_CDS: 4.95 Total: 13.36 kcal Atomic # 7 Polarization: -130.28 SS G_CDS: -5.02 Total: -135.30 kcal Atomic # 8 Polarization: -27.09 SS G_CDS: -0.06 Total: -27.15 kcal Atomic # 14 Polarization: 48.18 SS G_CDS: 2.03 Total: 50.21 kcal Total: -79.25 2.35 -76.90 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071728059.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.187 kcal (2) G-P(sol) polarization free energy of solvation -79.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.903 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds