Wall clock time and date at job start Sat Apr 11 2020 06:07:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08996 * 109.58652 * 2 1 4 4 C 1.53194 * 109.59069 * 239.71102 * 2 1 3 5 5 C 1.53035 * 109.31511 * 185.57832 * 4 2 1 6 6 C 1.53051 * 109.53731 * 61.36860 * 5 4 2 7 7 H 1.08995 * 109.49601 * 58.61485 * 6 5 4 8 8 N 1.46495 * 109.49789 * 178.68570 * 6 5 4 9 9 C 1.34776 * 119.99935 * 205.00377 * 8 6 5 10 10 O 1.21544 * 120.00008 * 359.97438 * 9 8 6 11 11 C 1.47920 * 120.00113 * 179.97438 * 9 8 6 12 12 C 1.38937 * 119.84601 * 180.02562 * 11 9 8 13 13 C 1.40644 * 117.39135 * 179.74834 * 12 11 9 14 14 C 1.40254 * 122.04390 * 179.64671 * 13 12 11 15 15 C 1.36274 * 119.47613 * 180.30047 * 14 13 12 16 16 C 1.39316 * 120.87322 * 0.27066 * 15 14 13 17 17 C 1.36228 * 121.15966 * 0.02562 * 16 15 14 18 18 C 1.40336 * 119.67713 * 359.97438 * 17 16 15 19 19 N 1.33817 * 121.61395 * 179.97438 * 18 17 16 20 20 N 1.28443 * 121.68902 * 180.02562 * 19 18 17 21 21 C 1.53197 * 109.31078 * 298.63490 * 6 5 4 22 22 N 1.46923 * 108.77471 * 54.63261 * 21 6 5 23 23 C 1.36945 * 120.62986 * 126.37061 * 22 21 6 24 24 H 1.08000 * 120.00065 * 209.03314 * 23 22 21 25 25 C 1.38806 * 119.99735 * 29.03254 * 23 22 21 26 26 N 1.31621 * 120.00386 * 15.01506 * 25 23 22 27 27 Si 1.86801 * 119.99984 * 195.01427 * 25 23 22 28 28 H 1.48506 * 109.46843 * 90.00246 * 27 25 23 29 29 H 1.48500 * 109.47178 * 210.00028 * 27 25 23 30 30 H 1.48494 * 109.47354 * 330.00312 * 27 25 23 31 31 H 1.09001 * 109.47268 * 180.28240 * 1 2 3 32 32 H 1.08992 * 109.47409 * 300.28906 * 1 2 3 33 33 H 1.09002 * 109.46590 * 60.28767 * 1 2 3 34 34 H 1.08999 * 109.49130 * 65.62937 * 4 2 1 35 35 H 1.09000 * 109.49472 * 305.53359 * 4 2 1 36 36 H 1.09003 * 109.46246 * 301.34846 * 5 4 2 37 37 H 1.08994 * 109.45064 * 181.38084 * 5 4 2 38 38 H 0.97006 * 120.00381 * 24.99364 * 8 6 5 39 39 H 1.08005 * 121.30178 * 0.02562 * 12 11 9 40 40 H 1.08002 * 120.26174 * 0.56605 * 14 13 12 41 41 H 1.08003 * 119.56023 * 180.30100 * 15 14 13 42 42 H 1.08002 * 119.42518 * 179.97438 * 16 15 14 43 43 H 1.07998 * 120.16404 * 179.97438 * 17 16 15 44 44 H 1.08992 * 109.58243 * 174.42349 * 21 6 5 45 45 H 1.09002 * 109.58578 * 294.84980 * 21 6 5 46 46 H 0.97000 * 120.00252 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0437 -0.7279 -1.2462 5 6 3.5675 -0.8466 -1.1711 6 6 3.9569 -1.6659 0.0617 7 1 3.4988 -2.6531 0.0019 8 7 5.4142 -1.8055 0.1156 9 6 5.9676 -2.8492 0.7644 10 8 5.2576 -3.6743 1.3052 11 6 7.4391 -2.9905 0.8185 12 6 8.0061 -4.0679 1.4878 13 6 9.4098 -4.1546 1.5023 14 6 10.0843 -5.1969 2.1548 15 6 11.4467 -5.2262 2.1409 16 6 12.1766 -4.2323 1.4925 17 6 11.5532 -3.2028 0.8543 18 6 10.1514 -3.1373 0.8461 19 7 9.4992 -2.1433 0.2318 20 7 8.2163 -2.0816 0.2238 21 6 3.4650 -0.9486 1.3228 22 7 2.0225 -0.7010 1.1937 23 6 1.1535 -1.1161 2.1672 24 1 0.1359 -1.3705 1.9100 25 6 1.5806 -1.2100 3.4846 26 7 2.7036 -0.6321 3.8552 27 14 0.5614 -2.1563 4.7317 28 1 0.9958 -3.5763 4.7506 29 1 0.7519 -1.5625 6.0794 30 1 -0.8735 -2.0826 4.3566 31 1 -0.3634 -1.0277 0.0051 32 1 -0.3634 0.5183 0.8873 33 1 -0.3632 0.5094 -0.8926 34 1 1.7661 -0.1642 -2.1369 35 1 1.6030 -1.7238 -1.2933 36 1 4.0062 0.1487 -1.0990 37 1 3.9377 -1.3424 -2.0683 38 1 5.9809 -1.1469 -0.3158 39 1 7.3928 -4.8123 1.9740 40 1 9.5283 -5.9724 2.6605 41 1 11.9674 -6.0308 2.6388 42 1 13.2556 -4.2784 1.4965 43 1 12.1349 -2.4407 0.3571 44 1 3.6517 -1.5745 2.1953 45 1 3.9902 0.0003 1.4319 46 1 3.0018 -0.6974 4.7759 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071728062.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:07:37 Heat of formation + Delta-G solvation = 64.526522 kcal Electronic energy + Delta-G solvation = -29050.355739 eV Core-core repulsion = 25133.960136 eV Total energy + Delta-G solvation = -3916.395602 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.56891 -39.49254 -38.06565 -37.48638 -34.50236 -33.88730 -32.81458 -32.06552 -30.95872 -30.31984 -29.77074 -26.30831 -25.49011 -25.25944 -24.52236 -22.75549 -22.26255 -21.37917 -20.24228 -19.39093 -18.93934 -18.34292 -17.12833 -16.39542 -16.28420 -15.62129 -15.50672 -15.05131 -14.96965 -14.63524 -14.20276 -14.05703 -13.79394 -13.75192 -13.52798 -13.32888 -12.78097 -12.70625 -12.58399 -12.38855 -12.34880 -11.84786 -11.44708 -11.40249 -11.09807 -10.98292 -10.85101 -10.70561 -10.49266 -10.36998 -10.22608 -10.06026 -9.93616 -9.84766 -9.69660 -9.48806 -9.43188 -8.75348 -8.52053 -8.38945 -6.58477 -5.70705 -3.15428 -0.33944 0.14154 1.39632 2.20926 3.15987 3.24715 3.44497 3.50732 3.51232 3.71977 3.75984 3.98766 4.21961 4.30607 4.41812 4.56261 4.66267 4.75290 4.87533 5.20294 5.33813 5.38254 5.39808 5.41069 5.48978 5.54122 5.61242 5.73344 5.81969 5.87037 5.92669 6.00035 6.16164 6.26887 6.30922 6.33470 6.42701 6.48001 6.52566 6.66934 6.77192 6.92082 7.07814 7.16172 7.34920 7.77640 7.83577 7.90081 8.31855 8.49242 8.54219 9.27515 9.91906 10.47184 11.37161 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.014750 B = 0.002868 C = 0.002516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1897.855803 B = 9761.176755 C =11126.175715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.164 3.836 3 H 0.026 0.974 4 C -0.125 4.125 5 C -0.117 4.117 6 C 0.115 3.885 7 H 0.084 0.916 8 N -0.696 5.696 9 C 0.571 3.429 10 O -0.523 6.523 11 C 0.003 3.997 12 C -0.029 4.029 13 C -0.074 4.074 14 C -0.092 4.092 15 C -0.100 4.100 16 C -0.094 4.094 17 C -0.080 4.080 18 C 0.069 3.931 19 N -0.203 5.203 20 N -0.190 5.190 21 C 0.167 3.833 22 N -0.583 5.583 23 C -0.251 4.251 24 H 0.071 0.929 25 C 0.005 3.995 26 N -0.901 5.901 27 Si 0.901 3.099 28 H -0.287 1.287 29 H -0.292 1.292 30 H -0.279 1.279 31 H 0.053 0.947 32 H 0.061 0.939 33 H 0.038 0.962 34 H 0.055 0.945 35 H 0.061 0.939 36 H 0.061 0.939 37 H 0.052 0.948 38 H 0.404 0.596 39 H 0.168 0.832 40 H 0.141 0.859 41 H 0.135 0.865 42 H 0.137 0.863 43 H 0.145 0.855 44 H 0.096 0.904 45 H 0.019 0.981 46 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.648 -6.982 -7.810 20.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.058 3.942 3 H 0.043 0.957 4 C -0.165 4.165 5 C -0.155 4.155 6 C 0.010 3.990 7 H 0.102 0.898 8 N -0.345 5.345 9 C 0.353 3.647 10 O -0.398 6.398 11 C -0.131 4.131 12 C -0.060 4.060 13 C -0.083 4.083 14 C -0.111 4.111 15 C -0.120 4.120 16 C -0.115 4.115 17 C -0.101 4.101 18 C -0.058 4.058 19 N -0.059 5.059 20 N -0.048 5.048 21 C 0.040 3.960 22 N -0.306 5.306 23 C -0.381 4.381 24 H 0.089 0.911 25 C -0.194 4.194 26 N -0.545 5.545 27 Si 0.731 3.269 28 H -0.214 1.214 29 H -0.219 1.219 30 H -0.204 1.204 31 H 0.072 0.928 32 H 0.080 0.920 33 H 0.057 0.943 34 H 0.074 0.926 35 H 0.079 0.921 36 H 0.080 0.920 37 H 0.071 0.929 38 H 0.239 0.761 39 H 0.185 0.815 40 H 0.159 0.841 41 H 0.153 0.847 42 H 0.155 0.845 43 H 0.163 0.837 44 H 0.114 0.886 45 H 0.037 0.963 46 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 17.140 -6.214 -8.088 19.945 hybrid contribution -0.091 -1.417 1.394 1.990 sum 17.049 -7.631 -6.693 19.842 Atomic orbital electron populations 1.21801 0.95995 1.01416 1.00162 1.20500 0.93061 0.93620 0.87044 0.95659 1.22044 0.94232 1.01318 0.98936 1.21685 0.97397 0.99826 0.96605 1.22114 0.77119 1.01116 0.98686 0.89785 1.45943 1.08952 1.25772 1.53828 1.17406 0.84759 0.82647 0.79863 1.90851 1.61215 1.42489 1.45212 1.22743 0.96794 0.94395 0.99153 1.22643 0.93619 0.96825 0.92901 1.18830 0.93709 0.96719 0.99013 1.21077 0.94932 0.97072 0.98024 1.21115 0.93981 0.98755 0.98144 1.21091 1.00924 0.93528 0.95924 1.20798 0.91191 0.99057 0.99021 1.20444 0.96123 0.92789 0.96480 1.73863 1.01204 1.18046 1.12833 1.73204 0.99231 1.20749 1.11598 1.21103 0.83594 0.97080 0.94185 1.44028 1.02597 1.64609 1.19412 1.19162 0.94705 1.38070 0.86148 0.91128 1.25082 0.97754 0.99520 0.97028 1.70003 1.23336 1.44351 1.16790 0.86316 0.79752 0.80023 0.80835 1.21374 1.21860 1.20441 0.92784 0.92037 0.94334 0.92594 0.92064 0.92036 0.92929 0.76107 0.81466 0.84102 0.84681 0.84527 0.83738 0.88635 0.96312 0.93767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.58 7.94 37.16 0.30 -2.28 16 2 C 0.16 3.40 3.50 -67.60 -0.24 3.16 16 3 H 0.03 0.55 8.14 -51.93 -0.42 0.12 16 4 C -0.13 -2.16 5.37 -26.61 -0.14 -2.31 16 5 C -0.12 -1.96 5.35 -26.69 -0.14 -2.10 16 6 C 0.11 2.29 2.61 -67.81 -0.18 2.11 16 7 H 0.08 1.86 7.58 -51.93 -0.39 1.47 16 8 N -0.70 -12.42 5.07 -54.61 -0.28 -12.70 16 9 C 0.57 10.69 7.77 -12.30 -0.10 10.60 16 10 O -0.52 -11.49 16.02 5.33 0.09 -11.40 16 11 C 0.00 0.05 6.82 -82.89 -0.57 -0.52 16 12 C -0.03 -0.39 9.51 -38.42 -0.37 -0.76 16 13 C -0.07 -0.86 5.75 -106.81 -0.61 -1.47 16 14 C -0.09 -0.75 9.81 -39.53 -0.39 -1.14 16 15 C -0.10 -0.63 9.96 -39.89 -0.40 -1.02 16 16 C -0.09 -0.59 9.94 -39.90 -0.40 -0.98 16 17 C -0.08 -0.68 10.00 -39.52 -0.40 -1.08 16 18 C 0.07 0.84 6.69 -84.79 -0.57 0.27 16 19 N -0.20 -2.92 11.55 32.24 0.37 -2.55 16 20 N -0.19 -2.96 10.70 33.24 0.36 -2.61 16 21 C 0.17 4.12 4.86 -3.71 -0.02 4.10 16 22 N -0.58 -14.64 2.99 -164.77 -0.49 -15.13 16 23 C -0.25 -6.91 8.61 -15.06 -0.13 -7.04 16 24 H 0.07 1.89 6.20 -52.49 -0.33 1.56 16 25 C 0.00 0.14 4.96 -17.43 -0.09 0.05 16 26 N -0.90 -26.90 11.14 55.49 0.62 -26.28 16 27 Si 0.90 22.44 29.58 -169.99 -5.03 17.42 16 28 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 29 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 30 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 31 H 0.05 1.04 7.40 -51.93 -0.38 0.65 16 32 H 0.06 1.25 7.66 -51.93 -0.40 0.86 16 33 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 35 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 36 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 37 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.40 6.34 7.93 -40.82 -0.32 6.01 16 39 H 0.17 2.04 7.69 -52.48 -0.40 1.63 16 40 H 0.14 0.85 8.06 -52.49 -0.42 0.43 16 41 H 0.14 0.45 8.06 -52.48 -0.42 0.03 16 42 H 0.14 0.43 8.06 -52.49 -0.42 0.01 16 43 H 0.14 0.98 8.06 -52.49 -0.42 0.56 16 44 H 0.10 2.75 6.06 -51.93 -0.31 2.44 16 45 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 46 H 0.25 7.36 8.31 -40.82 -0.34 7.02 16 LS Contribution 375.85 15.07 5.66 5.66 Total: -1.00 -33.60 375.85 -9.45 -43.06 By element: Atomic # 1 Polarization: 11.26 SS G_CDS: -6.33 Total: 4.93 kcal Atomic # 6 Polarization: 4.03 SS G_CDS: -4.42 Total: -0.39 kcal Atomic # 7 Polarization: -59.85 SS G_CDS: 0.58 Total: -59.28 kcal Atomic # 8 Polarization: -11.49 SS G_CDS: 0.09 Total: -11.40 kcal Atomic # 14 Polarization: 22.44 SS G_CDS: -5.03 Total: 17.42 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -33.60 -9.45 -43.06 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071728062.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.583 kcal (2) G-P(sol) polarization free energy of solvation -33.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.056 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds