Wall clock time and date at job start Sat Apr 11 2020 06:07:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08996 * 109.58652 * 2 1 4 4 C 1.53194 * 109.59069 * 239.71102 * 2 1 3 5 5 C 1.53035 * 109.31511 * 185.57832 * 4 2 1 6 6 C 1.53051 * 109.53731 * 61.36860 * 5 4 2 7 7 H 1.08995 * 109.49601 * 58.61485 * 6 5 4 8 8 N 1.46495 * 109.49789 * 178.68570 * 6 5 4 9 9 C 1.34776 * 119.99935 * 205.00377 * 8 6 5 10 10 O 1.21544 * 120.00008 * 359.97438 * 9 8 6 11 11 C 1.47920 * 120.00113 * 179.97438 * 9 8 6 12 12 C 1.38937 * 119.84601 * 180.02562 * 11 9 8 13 13 C 1.40644 * 117.39135 * 179.74834 * 12 11 9 14 14 C 1.40254 * 122.04390 * 179.64671 * 13 12 11 15 15 C 1.36274 * 119.47613 * 180.30047 * 14 13 12 16 16 C 1.39316 * 120.87322 * 0.27066 * 15 14 13 17 17 C 1.36228 * 121.15966 * 0.02562 * 16 15 14 18 18 C 1.40336 * 119.67713 * 359.97438 * 17 16 15 19 19 N 1.33817 * 121.61395 * 179.97438 * 18 17 16 20 20 N 1.28443 * 121.68902 * 180.02562 * 19 18 17 21 21 C 1.53197 * 109.31078 * 298.63490 * 6 5 4 22 22 N 1.46923 * 108.77471 * 54.63261 * 21 6 5 23 23 C 1.36945 * 120.62986 * 126.37061 * 22 21 6 24 24 H 1.08000 * 120.00065 * 209.03314 * 23 22 21 25 25 C 1.38806 * 119.99735 * 29.03254 * 23 22 21 26 26 N 1.31621 * 120.00386 * 15.01506 * 25 23 22 27 27 Si 1.86801 * 119.99984 * 195.01427 * 25 23 22 28 28 H 1.48506 * 109.46843 * 90.00246 * 27 25 23 29 29 H 1.48500 * 109.47178 * 210.00028 * 27 25 23 30 30 H 1.48494 * 109.47354 * 330.00312 * 27 25 23 31 31 H 1.09001 * 109.47268 * 180.28240 * 1 2 3 32 32 H 1.08992 * 109.47409 * 300.28906 * 1 2 3 33 33 H 1.09002 * 109.46590 * 60.28767 * 1 2 3 34 34 H 1.08999 * 109.49130 * 65.62937 * 4 2 1 35 35 H 1.09000 * 109.49472 * 305.53359 * 4 2 1 36 36 H 1.09003 * 109.46246 * 301.34846 * 5 4 2 37 37 H 1.08994 * 109.45064 * 181.38084 * 5 4 2 38 38 H 0.97006 * 120.00381 * 24.99364 * 8 6 5 39 39 H 1.08005 * 121.30178 * 0.02562 * 12 11 9 40 40 H 1.08002 * 120.26174 * 0.56605 * 14 13 12 41 41 H 1.08003 * 119.56023 * 180.30100 * 15 14 13 42 42 H 1.08002 * 119.42518 * 179.97438 * 16 15 14 43 43 H 1.07998 * 120.16404 * 179.97438 * 17 16 15 44 44 H 1.08992 * 109.58243 * 174.42349 * 21 6 5 45 45 H 1.09002 * 109.58578 * 294.84980 * 21 6 5 46 46 H 0.97000 * 120.00252 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0437 -0.7279 -1.2462 5 6 3.5675 -0.8466 -1.1711 6 6 3.9569 -1.6659 0.0617 7 1 3.4988 -2.6531 0.0019 8 7 5.4142 -1.8055 0.1156 9 6 5.9676 -2.8492 0.7644 10 8 5.2576 -3.6743 1.3052 11 6 7.4391 -2.9905 0.8185 12 6 8.0061 -4.0679 1.4878 13 6 9.4098 -4.1546 1.5023 14 6 10.0843 -5.1969 2.1548 15 6 11.4467 -5.2262 2.1409 16 6 12.1766 -4.2323 1.4925 17 6 11.5532 -3.2028 0.8543 18 6 10.1514 -3.1373 0.8461 19 7 9.4992 -2.1433 0.2318 20 7 8.2163 -2.0816 0.2238 21 6 3.4650 -0.9486 1.3228 22 7 2.0225 -0.7010 1.1937 23 6 1.1535 -1.1161 2.1672 24 1 0.1359 -1.3705 1.9100 25 6 1.5806 -1.2100 3.4846 26 7 2.7036 -0.6321 3.8552 27 14 0.5614 -2.1563 4.7317 28 1 0.9958 -3.5763 4.7506 29 1 0.7519 -1.5625 6.0794 30 1 -0.8735 -2.0826 4.3566 31 1 -0.3634 -1.0277 0.0051 32 1 -0.3634 0.5183 0.8873 33 1 -0.3632 0.5094 -0.8926 34 1 1.7661 -0.1642 -2.1369 35 1 1.6030 -1.7238 -1.2933 36 1 4.0062 0.1487 -1.0990 37 1 3.9377 -1.3424 -2.0683 38 1 5.9809 -1.1469 -0.3158 39 1 7.3928 -4.8123 1.9740 40 1 9.5283 -5.9724 2.6605 41 1 11.9674 -6.0308 2.6388 42 1 13.2556 -4.2784 1.4965 43 1 12.1349 -2.4407 0.3571 44 1 3.6517 -1.5745 2.1953 45 1 3.9902 0.0003 1.4319 46 1 3.0018 -0.6974 4.7759 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071728062.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:07:35 Heat of formation + Delta-G solvation = 41.685371 kcal Electronic energy + Delta-G solvation = -29051.346205 eV Core-core repulsion = 25133.960136 eV Total energy + Delta-G solvation = -3917.386069 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -42.52679 -40.93871 -39.34741 -38.71471 -36.13708 -34.85991 -34.69036 -33.07495 -32.11360 -31.76651 -31.32716 -27.88152 -27.03306 -26.36495 -25.78434 -24.04624 -23.53543 -22.70223 -21.81392 -21.07429 -19.79730 -19.58001 -18.36428 -18.11378 -17.31817 -17.09454 -16.82791 -16.61135 -15.87470 -15.70472 -15.68163 -15.46079 -15.37635 -15.08557 -14.98187 -14.55539 -14.44328 -14.14011 -13.55865 -13.53281 -13.41838 -13.09510 -13.02958 -12.75296 -12.74387 -12.58556 -12.30888 -12.22896 -12.11905 -11.98184 -11.93576 -11.68514 -11.49502 -11.19017 -11.10589 -10.99841 -10.55593 -10.49286 -10.18261 -9.48775 -8.64056 -7.85063 -5.32006 -1.20275 -0.78437 0.61442 1.21844 1.41120 1.45527 1.51797 1.87751 2.08332 2.49881 2.66747 2.79659 3.14833 3.26591 3.31884 3.41752 3.66412 3.71129 3.80684 3.93283 4.07477 4.10557 4.17008 4.24238 4.37045 4.41151 4.50466 4.57778 4.67406 4.70289 4.79817 4.87829 4.89664 5.00349 5.04429 5.06253 5.16846 5.22925 5.26036 5.29579 5.30426 5.39091 5.54789 5.60362 5.68868 5.70046 5.76530 6.35461 6.44300 7.02452 7.15592 7.31113 7.88624 8.38764 9.20273 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.014750 B = 0.002868 C = 0.002516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1897.855803 B = 9761.176755 C =11126.175715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.152 3.848 3 H 0.021 0.979 4 C -0.116 4.116 5 C -0.109 4.109 6 C 0.129 3.871 7 H 0.060 0.940 8 N -0.689 5.689 9 C 0.571 3.429 10 O -0.566 6.566 11 C -0.025 4.025 12 C -0.033 4.033 13 C -0.082 4.082 14 C -0.105 4.105 15 C -0.080 4.080 16 C -0.070 4.070 17 C -0.096 4.096 18 C 0.052 3.948 19 N -0.220 5.220 20 N -0.210 5.210 21 C 0.180 3.820 22 N -0.602 5.602 23 C -0.249 4.249 24 H 0.078 0.922 25 C -0.057 4.057 26 N -0.936 5.936 27 Si 0.960 3.040 28 H -0.294 1.294 29 H -0.295 1.295 30 H -0.261 1.261 31 H 0.047 0.953 32 H 0.038 0.962 33 H 0.079 0.921 34 H 0.097 0.903 35 H 0.056 0.944 36 H 0.070 0.930 37 H 0.085 0.915 38 H 0.415 0.585 39 H 0.170 0.830 40 H 0.161 0.839 41 H 0.177 0.823 42 H 0.180 0.820 43 H 0.160 0.840 44 H 0.046 0.954 45 H -0.005 1.005 46 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.010 -8.288 -9.241 23.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.047 3.953 3 H 0.038 0.962 4 C -0.155 4.155 5 C -0.147 4.147 6 C 0.023 3.977 7 H 0.078 0.922 8 N -0.339 5.339 9 C 0.355 3.645 10 O -0.445 6.445 11 C -0.158 4.158 12 C -0.063 4.063 13 C -0.091 4.091 14 C -0.123 4.123 15 C -0.099 4.099 16 C -0.090 4.090 17 C -0.117 4.117 18 C -0.075 4.075 19 N -0.076 5.076 20 N -0.068 5.068 21 C 0.053 3.947 22 N -0.326 5.326 23 C -0.379 4.379 24 H 0.096 0.904 25 C -0.251 4.251 26 N -0.583 5.583 27 Si 0.788 3.212 28 H -0.222 1.222 29 H -0.222 1.222 30 H -0.185 1.185 31 H 0.066 0.934 32 H 0.057 0.943 33 H 0.098 0.902 34 H 0.115 0.885 35 H 0.075 0.925 36 H 0.089 0.911 37 H 0.103 0.897 38 H 0.252 0.748 39 H 0.188 0.812 40 H 0.179 0.821 41 H 0.195 0.805 42 H 0.198 0.802 43 H 0.178 0.822 44 H 0.064 0.936 45 H 0.013 0.987 46 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 19.494 -7.493 -9.573 22.974 hybrid contribution -0.544 -1.087 1.860 2.222 sum 18.950 -8.580 -7.713 22.186 Atomic orbital electron populations 1.21728 0.94503 1.01263 1.01096 1.20827 0.94461 0.93347 0.86698 0.96153 1.21948 0.94058 1.01111 0.98409 1.21671 0.97462 0.99885 0.95728 1.21690 0.78118 0.99706 0.98138 0.92157 1.45823 1.08262 1.26045 1.53771 1.17860 0.86122 0.81944 0.78618 1.90804 1.62710 1.43998 1.46965 1.22288 0.94965 0.96404 1.02159 1.22772 0.95025 0.96089 0.92366 1.19073 0.92711 0.97816 0.99493 1.21408 0.96227 0.96632 0.98063 1.21691 0.93089 0.99075 0.96078 1.21666 1.03085 0.91481 0.92739 1.21120 0.89528 1.00810 1.00272 1.20917 0.97762 0.92413 0.96443 1.73729 1.00620 1.19432 1.13846 1.73092 0.99953 1.21130 1.12662 1.20748 0.83940 0.95231 0.94777 1.44324 1.02360 1.65489 1.20434 1.19526 0.95209 1.36487 0.86689 0.90437 1.25849 0.99090 1.01127 0.99071 1.70183 1.25226 1.46455 1.16430 0.85365 0.79296 0.78018 0.78474 1.22153 1.22194 1.18486 0.93363 0.94307 0.90222 0.88455 0.92548 0.91090 0.89690 0.74751 0.81209 0.82126 0.80517 0.80221 0.82201 0.93556 0.98747 0.94724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.70 7.94 71.98 0.57 -4.12 16 2 C 0.15 6.21 3.50 44.97 0.16 6.37 16 3 H 0.02 0.87 8.14 -2.39 -0.02 0.85 16 4 C -0.12 -3.75 5.37 30.67 0.16 -3.59 16 5 C -0.11 -3.53 5.35 30.62 0.16 -3.37 16 6 C 0.13 5.39 2.61 45.08 0.12 5.50 16 7 H 0.06 2.81 7.58 -2.39 -0.02 2.80 16 8 N -0.69 -26.15 5.07 -444.96 -2.26 -28.40 16 9 C 0.57 23.12 7.77 86.81 0.67 23.79 16 10 O -0.57 -27.08 16.02 -3.85 -0.06 -27.14 16 11 C -0.02 -0.84 6.82 41.62 0.28 -0.56 16 12 C -0.03 -0.93 9.51 23.03 0.22 -0.71 16 13 C -0.08 -1.87 5.75 -21.28 -0.12 -1.99 16 14 C -0.10 -1.43 9.81 22.30 0.22 -1.21 16 15 C -0.08 -0.60 9.96 22.07 0.22 -0.38 16 16 C -0.07 -0.52 9.94 22.06 0.22 -0.30 16 17 C -0.10 -1.39 10.00 22.31 0.22 -1.17 16 18 C 0.05 1.23 6.69 40.27 0.27 1.50 16 19 N -0.22 -6.51 11.55 -51.93 -0.60 -7.11 16 20 N -0.21 -6.94 10.70 -48.75 -0.52 -7.46 16 21 C 0.18 9.45 4.86 86.36 0.42 9.87 16 22 N -0.60 -31.31 2.99 -675.22 -2.02 -33.33 16 23 C -0.25 -14.13 8.61 84.03 0.72 -13.41 16 24 H 0.08 4.21 6.20 -2.91 -0.02 4.19 16 25 C -0.06 -3.36 4.96 84.86 0.42 -2.94 16 26 N -0.94 -59.38 11.14 21.65 0.24 -59.14 16 27 Si 0.96 47.97 29.58 68.60 2.03 50.00 16 28 H -0.29 -14.90 7.11 99.48 0.71 -14.19 16 29 H -0.30 -14.76 7.11 99.48 0.71 -14.06 16 30 H -0.26 -12.09 7.11 99.48 0.71 -11.38 16 31 H 0.05 1.80 7.40 -2.39 -0.02 1.78 16 32 H 0.04 1.56 7.66 -2.39 -0.02 1.54 16 33 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 34 H 0.10 2.42 8.14 -2.39 -0.02 2.40 16 35 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 36 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 37 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 38 H 0.42 13.70 7.93 -92.70 -0.74 12.96 16 39 H 0.17 4.50 7.69 -2.91 -0.02 4.48 16 40 H 0.16 1.51 8.06 -2.91 -0.02 1.49 16 41 H 0.18 -0.03 8.06 -2.91 -0.02 -0.05 16 42 H 0.18 -0.10 8.06 -2.91 -0.02 -0.13 16 43 H 0.16 1.75 8.06 -2.91 -0.02 1.73 16 44 H 0.05 2.88 6.06 -2.39 -0.01 2.87 16 45 H -0.01 -0.31 8.14 -2.39 -0.02 -0.33 16 46 H 0.24 15.16 8.31 -92.71 -0.77 14.39 16 Total: -1.00 -81.44 375.85 2.03 -79.41 By element: Atomic # 1 Polarization: 19.59 SS G_CDS: 0.28 Total: 19.87 kcal Atomic # 6 Polarization: 8.35 SS G_CDS: 4.94 Total: 13.30 kcal Atomic # 7 Polarization: -130.28 SS G_CDS: -5.16 Total: -135.44 kcal Atomic # 8 Polarization: -27.08 SS G_CDS: -0.06 Total: -27.14 kcal Atomic # 14 Polarization: 47.97 SS G_CDS: 2.03 Total: 50.00 kcal Total: -81.44 2.03 -79.41 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071728062.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.095 kcal (2) G-P(sol) polarization free energy of solvation -81.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.409 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds