Wall clock time and date at job start Sat Apr 11 2020 06:07:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08999 * 109.70113 * 2 1 4 4 C 1.53193 * 109.58828 * 239.64284 * 2 1 3 5 5 C 1.53037 * 109.31371 * 185.58229 * 4 2 1 6 6 C 1.53033 * 109.53121 * 61.37045 * 5 4 2 7 7 H 1.08995 * 109.49979 * 178.67811 * 6 5 4 8 8 N 1.46509 * 109.49539 * 58.57908 * 6 5 4 9 9 C 1.34776 * 119.99397 * 155.00009 * 8 6 5 10 10 O 1.21487 * 120.00664 * 0.02562 * 9 8 6 11 11 C 1.48380 * 119.99439 * 179.97438 * 9 8 6 12 12 C 1.40216 * 119.21810 * 179.73179 * 11 9 8 13 13 C 1.36640 * 119.90528 * 179.72288 * 12 11 9 14 14 C 1.40559 * 118.10776 * 0.53178 * 13 12 11 15 15 C 1.40403 * 122.05896 * 179.75154 * 14 13 12 16 16 N 1.31248 * 119.87404 * 179.97438 * 15 14 13 17 17 C 1.32598 * 122.68424 * 359.97438 * 16 15 14 18 18 C 1.36102 * 121.99136 * 0.02562 * 17 16 15 19 19 C 1.40946 * 118.77110 * 359.97438 * 18 17 16 20 20 N 1.31980 * 119.21991 * 0.02562 * 11 9 8 21 21 C 1.53194 * 109.31239 * 298.61690 * 6 5 4 22 22 N 1.46929 * 108.76440 * 54.65609 * 21 6 5 23 23 C 1.36932 * 120.63078 * 126.40768 * 22 21 6 24 24 H 1.08007 * 119.99929 * 209.02648 * 23 22 21 25 25 C 1.38809 * 120.00147 * 29.02525 * 23 22 21 26 26 N 1.31618 * 120.00290 * 15.06515 * 25 23 22 27 27 Si 1.86802 * 120.00128 * 195.06001 * 25 23 22 28 28 H 1.48502 * 109.46833 * 0.02562 * 27 25 23 29 29 H 1.48499 * 109.47183 * 119.99971 * 27 25 23 30 30 H 1.48500 * 109.47259 * 240.00056 * 27 25 23 31 31 H 1.08998 * 109.46950 * 180.35600 * 1 2 3 32 32 H 1.08994 * 109.46869 * 300.35360 * 1 2 3 33 33 H 1.08997 * 109.46601 * 60.35921 * 1 2 3 34 34 H 1.08999 * 109.49736 * 65.62754 * 4 2 1 35 35 H 1.09006 * 109.52222 * 305.54839 * 4 2 1 36 36 H 1.09003 * 109.45877 * 181.39070 * 5 4 2 37 37 H 1.09006 * 109.45625 * 301.35525 * 5 4 2 38 38 H 0.96996 * 120.00035 * 335.00144 * 8 6 5 39 39 H 1.07996 * 120.04150 * 359.97438 * 12 11 9 40 40 H 1.08001 * 120.94514 * 180.26310 * 13 12 11 41 41 H 1.08000 * 120.06216 * 359.95724 * 15 14 13 42 42 H 1.07991 * 119.00634 * 180.02562 * 17 16 15 43 43 H 1.08003 * 120.61560 * 180.02562 * 18 17 16 44 44 H 1.08993 * 109.59507 * 294.86394 * 21 6 5 45 45 H 1.09003 * 109.70236 * 174.50344 * 21 6 5 46 46 H 0.96998 * 120.00359 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0436 -0.7294 -1.2454 5 6 3.5675 -0.8481 -1.1700 6 6 3.9566 -1.6659 0.0635 7 1 5.0408 -1.7700 0.1038 8 7 3.3399 -2.9926 -0.0149 9 6 3.8962 -4.0337 0.6354 10 8 4.9087 -3.8721 1.2871 11 6 3.2713 -5.3772 0.5564 12 6 3.8670 -6.4501 1.2348 13 6 3.3002 -7.6920 1.1763 14 6 2.1286 -7.8501 0.4161 15 6 1.4805 -9.0897 0.2949 16 7 0.3880 -9.1885 -0.4258 17 6 -0.1477 -8.1543 -1.0595 18 6 0.4035 -6.9111 -1.0054 19 6 1.5791 -6.7225 -0.2510 20 7 2.1713 -5.5352 -0.1554 21 6 3.4650 -0.9470 1.3238 22 7 2.0225 -0.6996 1.1945 23 6 1.1537 -1.1127 2.1690 24 1 0.1360 -1.3675 1.9125 25 6 1.5810 -1.2041 3.4865 26 7 2.7037 -0.6249 3.8560 27 14 0.5627 -2.1490 4.7353 28 1 -0.6452 -2.7024 4.0720 29 1 1.3726 -3.2608 5.2950 30 1 0.1514 -1.2356 5.8315 31 1 -0.3633 -1.0276 0.0064 32 1 -0.3633 0.5193 0.8868 33 1 -0.3632 0.5082 -0.8932 34 1 1.7661 -0.1669 -2.1368 35 1 1.6030 -1.7254 -1.2919 36 1 3.9378 -1.3449 -2.0668 37 1 4.0062 0.1473 -1.0990 38 1 2.5313 -3.1215 -0.5349 39 1 4.7701 -6.2941 1.8061 40 1 3.7424 -8.5293 1.6958 41 1 1.8803 -9.9603 0.7935 42 1 -1.0487 -8.3029 -1.6361 43 1 -0.0519 -6.0841 -1.5300 44 1 3.9903 0.0019 1.4317 45 1 3.6520 -1.5697 2.1987 46 1 3.0021 -0.6884 4.7767 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071841529.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:07:51 Heat of formation + Delta-G solvation = 55.599032 kcal Electronic energy + Delta-G solvation = -30176.647795 eV Core-core repulsion = 26259.865067 eV Total energy + Delta-G solvation = -3916.782727 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -41.38223 -39.61850 -38.18486 -37.26330 -34.29609 -33.76799 -32.73797 -31.93772 -30.67285 -30.41189 -29.85479 -26.49980 -25.62523 -24.89404 -24.29313 -22.85834 -22.17701 -21.39706 -20.38348 -18.83598 -18.66018 -18.15950 -17.37931 -16.31252 -16.14974 -15.39636 -15.30065 -15.11324 -14.82581 -14.49599 -14.27494 -14.17778 -13.91640 -13.72206 -13.40153 -13.23994 -13.04886 -12.93271 -12.61720 -12.47986 -12.40091 -11.89646 -11.24780 -11.15881 -10.96972 -10.90409 -10.86556 -10.72191 -10.37136 -10.31168 -10.17929 -9.95808 -9.90986 -9.57273 -9.45495 -9.42099 -9.37602 -8.71717 -8.44945 -8.40112 -6.59388 -5.74172 -3.17492 -0.09437 0.40844 1.65307 2.47628 3.34046 3.37016 3.45322 3.46191 3.48621 3.94277 4.01610 4.10727 4.28931 4.47604 4.50636 4.55524 4.78134 5.04766 5.14422 5.31656 5.36420 5.37896 5.42137 5.48934 5.51870 5.55833 5.60949 5.72468 5.87925 6.01586 6.12252 6.14261 6.16109 6.33813 6.35918 6.39809 6.45123 6.51365 6.62492 6.67624 6.87720 7.05397 7.13296 7.34707 7.47011 7.65289 7.69805 7.85253 8.06003 8.49835 8.63642 9.24646 9.88965 10.44714 11.33827 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.010365 B = 0.004171 C = 0.003900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2700.778683 B = 6711.794097 C = 7177.996134 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.166 3.834 3 H 0.025 0.975 4 C -0.132 4.132 5 C -0.118 4.118 6 C 0.114 3.886 7 H 0.078 0.922 8 N -0.672 5.672 9 C 0.561 3.439 10 O -0.533 6.533 11 C 0.154 3.846 12 C -0.129 4.129 13 C -0.042 4.042 14 C -0.158 4.158 15 C 0.158 3.842 16 N -0.487 5.487 17 C 0.083 3.917 18 C -0.132 4.132 19 C 0.154 3.846 20 N -0.445 5.445 21 C 0.161 3.839 22 N -0.583 5.583 23 C -0.245 4.245 24 H 0.068 0.932 25 C 0.005 3.995 26 N -0.899 5.899 27 Si 0.892 3.108 28 H -0.279 1.279 29 H -0.290 1.290 30 H -0.290 1.290 31 H 0.052 0.948 32 H 0.060 0.940 33 H 0.037 0.963 34 H 0.053 0.947 35 H 0.056 0.944 36 H 0.052 0.948 37 H 0.072 0.928 38 H 0.407 0.593 39 H 0.156 0.844 40 H 0.152 0.848 41 H 0.167 0.833 42 H 0.160 0.840 43 H 0.149 0.851 44 H 0.028 0.972 45 H 0.098 0.902 46 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.188 -12.332 -11.221 16.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.059 3.941 3 H 0.043 0.957 4 C -0.171 4.171 5 C -0.156 4.156 6 C 0.009 3.991 7 H 0.096 0.904 8 N -0.322 5.322 9 C 0.344 3.656 10 O -0.410 6.410 11 C -0.001 4.001 12 C -0.150 4.150 13 C -0.070 4.070 14 C -0.162 4.162 15 C -0.016 4.016 16 N -0.195 5.195 17 C -0.060 4.060 18 C -0.152 4.152 19 C 0.025 3.975 20 N -0.157 5.157 21 C 0.034 3.966 22 N -0.306 5.306 23 C -0.375 4.375 24 H 0.086 0.914 25 C -0.193 4.193 26 N -0.544 5.544 27 Si 0.723 3.277 28 H -0.204 1.204 29 H -0.217 1.217 30 H -0.217 1.217 31 H 0.071 0.929 32 H 0.079 0.921 33 H 0.056 0.944 34 H 0.072 0.928 35 H 0.075 0.925 36 H 0.070 0.930 37 H 0.091 0.909 38 H 0.243 0.757 39 H 0.174 0.826 40 H 0.169 0.831 41 H 0.184 0.816 42 H 0.177 0.823 43 H 0.167 0.833 44 H 0.045 0.955 45 H 0.116 0.884 46 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -0.395 -12.197 -11.252 16.599 hybrid contribution -0.159 -0.350 1.110 1.175 sum -0.554 -12.547 -10.142 16.143 Atomic orbital electron populations 1.21793 0.96121 1.01301 1.00105 1.20462 0.92907 0.93594 0.87111 0.95713 1.22081 0.95100 1.00861 0.99096 1.21688 0.97140 1.00126 0.96666 1.21915 0.97043 0.81508 0.98657 0.90367 1.45749 1.29103 1.08010 1.49309 1.17748 0.84181 0.83162 0.80513 1.90772 1.24850 1.84136 1.41233 1.21827 0.90732 0.95380 0.92179 1.21884 1.01833 0.92027 0.99214 1.21423 0.92787 0.97916 0.94882 1.19936 0.98480 0.96561 1.01231 1.23206 0.90043 0.95167 0.93144 1.67472 1.10920 1.33578 1.07540 1.22231 0.99268 0.87864 0.96656 1.21813 0.94571 0.99481 0.99342 1.18913 0.94975 0.88324 0.95246 1.67929 1.07947 1.23371 1.16451 1.21204 0.83835 0.97171 0.94340 1.44052 1.02687 1.64775 1.19062 1.19124 0.94619 1.37647 0.86123 0.91434 1.25021 0.97681 0.99718 0.96908 1.69981 1.23188 1.44484 1.16737 0.86375 0.79721 0.79773 0.81868 1.20411 1.21728 1.21674 0.92906 0.92104 0.94414 0.92798 0.92499 0.92959 0.90939 0.75650 0.82642 0.83080 0.81574 0.82291 0.83349 0.95451 0.88395 0.93744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.48 7.95 37.16 0.30 -2.18 16 2 C 0.17 3.27 3.50 -67.59 -0.24 3.03 16 3 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 4 C -0.13 -2.13 5.20 -26.61 -0.14 -2.27 16 5 C -0.12 -1.86 5.59 -26.70 -0.15 -2.01 16 6 C 0.11 2.17 2.81 -67.81 -0.19 1.98 16 7 H 0.08 1.49 7.58 -51.93 -0.39 1.10 16 8 N -0.67 -12.50 4.90 -54.46 -0.27 -12.76 16 9 C 0.56 10.83 7.78 -12.08 -0.09 10.74 16 10 O -0.53 -11.57 15.94 5.38 0.09 -11.48 16 11 C 0.15 2.57 6.75 -82.89 -0.56 2.01 16 12 C -0.13 -1.77 9.54 -39.42 -0.38 -2.14 16 13 C -0.04 -0.45 9.92 -39.28 -0.39 -0.84 16 14 C -0.16 -1.89 5.75 -106.74 -0.61 -2.50 16 15 C 0.16 1.59 11.05 -16.99 -0.19 1.41 16 16 N -0.49 -5.52 10.30 -13.18 -0.14 -5.65 16 17 C 0.08 0.87 11.06 -17.99 -0.20 0.67 16 18 C -0.13 -1.54 10.08 -39.32 -0.40 -1.94 16 19 C 0.15 2.15 6.63 -84.86 -0.56 1.59 16 20 N -0.45 -7.12 9.50 -7.49 -0.07 -7.19 16 21 C 0.16 3.81 4.89 -3.71 -0.02 3.79 16 22 N -0.58 -13.85 2.91 -164.77 -0.48 -14.33 16 23 C -0.25 -6.51 8.61 -15.06 -0.13 -6.64 16 24 H 0.07 1.78 6.20 -52.48 -0.33 1.45 16 25 C 0.01 0.15 4.96 -17.43 -0.09 0.06 16 26 N -0.90 -26.32 11.14 55.49 0.62 -25.70 16 27 Si 0.89 22.26 29.58 -169.99 -5.03 17.23 16 28 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 29 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 30 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 31 H 0.05 0.98 7.40 -51.93 -0.38 0.60 16 32 H 0.06 1.21 7.66 -51.93 -0.40 0.82 16 33 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.06 0.93 6.40 -51.93 -0.33 0.60 16 36 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 38 H 0.41 7.21 6.07 -40.82 -0.25 6.97 16 39 H 0.16 2.01 7.60 -52.49 -0.40 1.61 16 40 H 0.15 0.99 8.06 -52.49 -0.42 0.56 16 41 H 0.17 1.07 8.06 -52.49 -0.42 0.64 16 42 H 0.16 1.18 8.06 -52.49 -0.42 0.76 16 43 H 0.15 1.51 8.06 -52.48 -0.42 1.09 16 44 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 45 H 0.10 2.73 6.06 -51.93 -0.31 2.41 16 46 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 LS Contribution 372.01 15.07 5.61 5.61 Total: -1.00 -32.60 372.01 -9.86 -42.46 By element: Atomic # 1 Polarization: 13.22 SS G_CDS: -6.16 Total: 7.06 kcal Atomic # 6 Polarization: 8.79 SS G_CDS: -4.03 Total: 4.75 kcal Atomic # 7 Polarization: -65.29 SS G_CDS: -0.34 Total: -65.63 kcal Atomic # 8 Polarization: -11.57 SS G_CDS: 0.09 Total: -11.48 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -5.03 Total: 17.23 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -32.60 -9.86 -42.46 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071841529.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.060 kcal (2) G-P(sol) polarization free energy of solvation -32.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.461 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds