Wall clock time and date at job start Sat Apr 11 2020 06:07:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08999 * 109.70113 * 2 1 4 4 C 1.53193 * 109.58828 * 239.64284 * 2 1 3 5 5 C 1.53037 * 109.31371 * 185.58229 * 4 2 1 6 6 C 1.53033 * 109.53121 * 61.37045 * 5 4 2 7 7 H 1.08995 * 109.49979 * 178.67811 * 6 5 4 8 8 N 1.46509 * 109.49539 * 58.57908 * 6 5 4 9 9 C 1.34776 * 119.99397 * 155.00009 * 8 6 5 10 10 O 1.21487 * 120.00664 * 0.02562 * 9 8 6 11 11 C 1.48380 * 119.99439 * 179.97438 * 9 8 6 12 12 C 1.40216 * 119.21810 * 179.73179 * 11 9 8 13 13 C 1.36640 * 119.90528 * 179.72288 * 12 11 9 14 14 C 1.40559 * 118.10776 * 0.53178 * 13 12 11 15 15 C 1.40403 * 122.05896 * 179.75154 * 14 13 12 16 16 N 1.31248 * 119.87404 * 179.97438 * 15 14 13 17 17 C 1.32598 * 122.68424 * 359.97438 * 16 15 14 18 18 C 1.36102 * 121.99136 * 0.02562 * 17 16 15 19 19 C 1.40946 * 118.77110 * 359.97438 * 18 17 16 20 20 N 1.31980 * 119.21991 * 0.02562 * 11 9 8 21 21 C 1.53194 * 109.31239 * 298.61690 * 6 5 4 22 22 N 1.46929 * 108.76440 * 54.65609 * 21 6 5 23 23 C 1.36932 * 120.63078 * 126.40768 * 22 21 6 24 24 H 1.08007 * 119.99929 * 209.02648 * 23 22 21 25 25 C 1.38809 * 120.00147 * 29.02525 * 23 22 21 26 26 N 1.31618 * 120.00290 * 15.06515 * 25 23 22 27 27 Si 1.86802 * 120.00128 * 195.06001 * 25 23 22 28 28 H 1.48502 * 109.46833 * 0.02562 * 27 25 23 29 29 H 1.48499 * 109.47183 * 119.99971 * 27 25 23 30 30 H 1.48500 * 109.47259 * 240.00056 * 27 25 23 31 31 H 1.08998 * 109.46950 * 180.35600 * 1 2 3 32 32 H 1.08994 * 109.46869 * 300.35360 * 1 2 3 33 33 H 1.08997 * 109.46601 * 60.35921 * 1 2 3 34 34 H 1.08999 * 109.49736 * 65.62754 * 4 2 1 35 35 H 1.09006 * 109.52222 * 305.54839 * 4 2 1 36 36 H 1.09003 * 109.45877 * 181.39070 * 5 4 2 37 37 H 1.09006 * 109.45625 * 301.35525 * 5 4 2 38 38 H 0.96996 * 120.00035 * 335.00144 * 8 6 5 39 39 H 1.07996 * 120.04150 * 359.97438 * 12 11 9 40 40 H 1.08001 * 120.94514 * 180.26310 * 13 12 11 41 41 H 1.08000 * 120.06216 * 359.95724 * 15 14 13 42 42 H 1.07991 * 119.00634 * 180.02562 * 17 16 15 43 43 H 1.08003 * 120.61560 * 180.02562 * 18 17 16 44 44 H 1.08993 * 109.59507 * 294.86394 * 21 6 5 45 45 H 1.09003 * 109.70236 * 174.50344 * 21 6 5 46 46 H 0.96998 * 120.00359 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0436 -0.7294 -1.2454 5 6 3.5675 -0.8481 -1.1700 6 6 3.9566 -1.6659 0.0635 7 1 5.0408 -1.7700 0.1038 8 7 3.3399 -2.9926 -0.0149 9 6 3.8962 -4.0337 0.6354 10 8 4.9087 -3.8721 1.2871 11 6 3.2713 -5.3772 0.5564 12 6 3.8670 -6.4501 1.2348 13 6 3.3002 -7.6920 1.1763 14 6 2.1286 -7.8501 0.4161 15 6 1.4805 -9.0897 0.2949 16 7 0.3880 -9.1885 -0.4258 17 6 -0.1477 -8.1543 -1.0595 18 6 0.4035 -6.9111 -1.0054 19 6 1.5791 -6.7225 -0.2510 20 7 2.1713 -5.5352 -0.1554 21 6 3.4650 -0.9470 1.3238 22 7 2.0225 -0.6996 1.1945 23 6 1.1537 -1.1127 2.1690 24 1 0.1360 -1.3675 1.9125 25 6 1.5810 -1.2041 3.4865 26 7 2.7037 -0.6249 3.8560 27 14 0.5627 -2.1490 4.7353 28 1 -0.6452 -2.7024 4.0720 29 1 1.3726 -3.2608 5.2950 30 1 0.1514 -1.2356 5.8315 31 1 -0.3633 -1.0276 0.0064 32 1 -0.3633 0.5193 0.8868 33 1 -0.3632 0.5082 -0.8932 34 1 1.7661 -0.1669 -2.1368 35 1 1.6030 -1.7254 -1.2919 36 1 3.9378 -1.3449 -2.0668 37 1 4.0062 0.1473 -1.0990 38 1 2.5313 -3.1215 -0.5349 39 1 4.7701 -6.2941 1.8061 40 1 3.7424 -8.5293 1.6958 41 1 1.8803 -9.9603 0.7935 42 1 -1.0487 -8.3029 -1.6361 43 1 -0.0519 -6.0841 -1.5300 44 1 3.9903 0.0019 1.4317 45 1 3.6520 -1.5697 2.1987 46 1 3.0021 -0.6884 4.7767 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071841529.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:07:50 Heat of formation + Delta-G solvation = 33.788312 kcal Electronic energy + Delta-G solvation = -30177.593578 eV Core-core repulsion = 26259.865067 eV Total energy + Delta-G solvation = -3917.728511 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.42 seconds Orbital eigenvalues (eV) -42.36412 -41.02763 -39.48248 -38.59186 -35.89568 -34.83451 -34.48863 -33.06115 -31.93932 -31.69580 -31.46277 -28.01598 -27.14513 -26.41383 -25.25574 -23.92503 -23.74871 -22.70776 -21.98493 -20.40494 -19.75438 -19.36216 -18.38463 -18.12337 -17.36889 -16.96844 -16.70680 -16.34077 -15.92168 -15.82836 -15.62417 -15.45495 -15.36658 -15.20193 -14.81399 -14.49913 -14.36564 -14.08215 -14.01784 -13.79271 -13.58351 -13.31326 -13.03290 -12.91048 -12.66408 -12.57089 -12.44016 -12.14555 -12.09439 -11.81281 -11.60202 -11.47266 -11.23725 -11.07347 -10.92636 -10.57458 -10.51871 -10.47277 -9.99442 -9.58687 -8.58766 -7.84109 -5.28350 -1.06434 -0.54291 0.74011 1.34187 1.36173 1.37656 1.45453 2.03479 2.28523 2.46626 2.84151 2.99492 3.31108 3.36524 3.44329 3.59761 3.60119 3.62038 3.78617 3.99008 4.05515 4.08519 4.16943 4.26642 4.46865 4.52668 4.61332 4.65622 4.71747 4.75461 4.79640 4.84466 4.92569 4.94558 5.02345 5.06472 5.09227 5.24284 5.27993 5.30693 5.53342 5.54118 5.59239 5.63784 5.71447 5.73023 6.32925 6.42906 6.64282 6.83687 7.16608 7.17405 7.91475 8.41562 9.21087 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.010365 B = 0.004171 C = 0.003900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2700.778683 B = 6711.794097 C = 7177.996134 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.155 3.845 3 H 0.019 0.981 4 C -0.121 4.121 5 C -0.110 4.110 6 C 0.122 3.878 7 H 0.073 0.927 8 N -0.669 5.669 9 C 0.554 3.446 10 O -0.569 6.569 11 C 0.127 3.873 12 C -0.152 4.152 13 C -0.012 4.012 14 C -0.168 4.168 15 C 0.172 3.828 16 N -0.502 5.502 17 C 0.093 3.907 18 C -0.149 4.149 19 C 0.128 3.872 20 N -0.464 5.464 21 C 0.171 3.829 22 N -0.595 5.595 23 C -0.233 4.233 24 H 0.071 0.929 25 C -0.052 4.052 26 N -0.934 5.934 27 Si 0.944 3.056 28 H -0.267 1.267 29 H -0.302 1.302 30 H -0.290 1.290 31 H 0.046 0.954 32 H 0.035 0.965 33 H 0.076 0.924 34 H 0.091 0.909 35 H 0.056 0.944 36 H 0.084 0.916 37 H 0.079 0.921 38 H 0.411 0.589 39 H 0.155 0.845 40 H 0.202 0.798 41 H 0.210 0.790 42 H 0.189 0.811 43 H 0.156 0.844 44 H 0.003 0.997 45 H 0.050 0.950 46 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.793 -14.889 -13.488 20.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.050 3.950 3 H 0.037 0.963 4 C -0.160 4.160 5 C -0.148 4.148 6 C 0.016 3.984 7 H 0.091 0.909 8 N -0.318 5.318 9 C 0.338 3.662 10 O -0.449 6.449 11 C -0.027 4.027 12 C -0.173 4.173 13 C -0.039 4.039 14 C -0.172 4.172 15 C -0.002 4.002 16 N -0.210 5.210 17 C -0.049 4.049 18 C -0.169 4.169 19 C 0.000 4.000 20 N -0.176 5.176 21 C 0.044 3.956 22 N -0.319 5.319 23 C -0.364 4.364 24 H 0.089 0.911 25 C -0.247 4.247 26 N -0.581 5.581 27 Si 0.774 3.226 28 H -0.191 1.191 29 H -0.229 1.229 30 H -0.217 1.217 31 H 0.065 0.935 32 H 0.055 0.945 33 H 0.095 0.905 34 H 0.110 0.890 35 H 0.074 0.926 36 H 0.102 0.898 37 H 0.098 0.902 38 H 0.249 0.751 39 H 0.173 0.827 40 H 0.219 0.781 41 H 0.226 0.774 42 H 0.206 0.794 43 H 0.174 0.826 44 H 0.021 0.979 45 H 0.068 0.932 46 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -2.040 -14.746 -13.573 20.145 hybrid contribution 0.257 0.355 1.738 1.792 sum -1.783 -14.391 -11.835 18.717 Atomic orbital electron populations 1.21717 0.94861 1.01080 1.00876 1.20764 0.94071 0.93322 0.86870 0.96346 1.21964 0.94881 1.00795 0.98315 1.21671 0.97207 1.00098 0.95829 1.21673 0.96664 0.81941 0.98084 0.90885 1.45708 1.29208 1.07680 1.49236 1.18310 0.83812 0.84499 0.79545 1.90730 1.26461 1.85057 1.42604 1.21532 0.91995 0.94571 0.94559 1.21957 1.02502 0.92719 1.00137 1.21927 0.91340 0.97847 0.92832 1.20238 0.98989 0.96855 1.01152 1.23870 0.88986 0.95456 0.91848 1.67606 1.11510 1.33778 1.08118 1.22705 0.99562 0.87040 0.95642 1.21977 0.94404 1.00550 0.99999 1.19367 0.95877 0.88467 0.96287 1.67797 1.07966 1.24936 1.16932 1.20879 0.84125 0.95575 0.95010 1.44258 1.02314 1.65474 1.19853 1.19387 0.94871 1.35551 0.86548 0.91149 1.25648 0.98870 1.01443 0.98735 1.70140 1.24957 1.46691 1.16314 0.85539 0.78698 0.78298 0.80094 1.19136 1.22944 1.21713 0.93484 0.94550 0.90484 0.89008 0.92551 0.89791 0.90208 0.75079 0.82732 0.78135 0.77398 0.79394 0.82597 0.97880 0.93167 0.94732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.47 7.95 71.98 0.57 -3.90 16 2 C 0.15 5.97 3.50 44.98 0.16 6.12 16 3 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 4 C -0.12 -3.58 5.20 30.67 0.16 -3.42 16 5 C -0.11 -3.28 5.59 30.62 0.17 -3.11 16 6 C 0.12 4.76 2.81 45.07 0.13 4.88 16 7 H 0.07 2.91 7.58 -2.39 -0.02 2.89 16 8 N -0.67 -25.51 4.90 -444.52 -2.18 -27.69 16 9 C 0.55 22.42 7.78 86.95 0.68 23.10 16 10 O -0.57 -26.32 15.94 -3.68 -0.06 -26.38 16 11 C 0.13 4.35 6.75 42.31 0.29 4.64 16 12 C -0.15 -4.15 9.54 22.38 0.21 -3.94 16 13 C -0.01 -0.22 9.92 22.46 0.22 0.00 16 14 C -0.17 -3.58 5.75 -21.24 -0.12 -3.70 16 15 C 0.17 2.78 11.05 85.31 0.94 3.72 16 16 N -0.50 -9.58 10.30 -195.62 -2.02 -11.59 16 17 C 0.09 1.68 11.06 84.08 0.93 2.61 16 18 C -0.15 -3.25 10.08 22.44 0.23 -3.02 16 19 C 0.13 3.46 6.63 40.58 0.27 3.72 16 20 N -0.46 -14.90 9.50 -177.60 -1.69 -16.59 16 21 C 0.17 8.51 4.89 86.36 0.42 8.93 16 22 N -0.60 -28.99 2.91 -675.21 -1.96 -30.95 16 23 C -0.23 -12.67 8.61 84.03 0.72 -11.94 16 24 H 0.07 3.74 6.20 -2.91 -0.02 3.72 16 25 C -0.05 -3.01 4.96 84.86 0.42 -2.59 16 26 N -0.93 -57.69 11.14 21.65 0.24 -57.45 16 27 Si 0.94 47.26 29.58 68.60 2.03 49.29 16 28 H -0.27 -12.65 7.11 99.48 0.71 -11.95 16 29 H -0.30 -15.52 7.11 99.48 0.71 -14.81 16 30 H -0.29 -14.40 7.11 99.48 0.71 -13.69 16 31 H 0.05 1.68 7.40 -2.39 -0.02 1.66 16 32 H 0.04 1.42 7.66 -2.39 -0.02 1.40 16 33 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 34 H 0.09 2.12 8.14 -2.39 -0.02 2.10 16 35 H 0.06 1.71 6.40 -2.38 -0.02 1.69 16 36 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 37 H 0.08 2.29 8.14 -2.38 -0.02 2.27 16 38 H 0.41 14.67 6.07 -92.71 -0.56 14.11 16 39 H 0.15 4.11 7.60 -2.91 -0.02 4.09 16 40 H 0.20 1.64 8.06 -2.91 -0.02 1.61 16 41 H 0.21 1.48 8.06 -2.91 -0.02 1.45 16 42 H 0.19 2.13 8.06 -2.92 -0.02 2.10 16 43 H 0.16 3.00 8.06 -2.91 -0.02 2.97 16 44 H 0.00 0.17 8.14 -2.39 -0.02 0.15 16 45 H 0.05 2.99 6.06 -2.39 -0.01 2.98 16 46 H 0.24 14.83 8.31 -92.71 -0.77 14.06 16 Total: -1.00 -76.83 372.01 1.21 -75.61 By element: Atomic # 1 Polarization: 23.19 SS G_CDS: 0.45 Total: 23.64 kcal Atomic # 6 Polarization: 15.71 SS G_CDS: 6.40 Total: 22.10 kcal Atomic # 7 Polarization: -136.66 SS G_CDS: -7.61 Total: -144.27 kcal Atomic # 8 Polarization: -26.32 SS G_CDS: -0.06 Total: -26.38 kcal Atomic # 14 Polarization: 47.26 SS G_CDS: 2.03 Total: 49.29 kcal Total: -76.83 1.21 -75.61 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071841529.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.402 kcal (2) G-P(sol) polarization free energy of solvation -76.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.614 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.42 seconds