Wall clock time and date at job start Sat Apr 11 2020 06:08:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.58212 * 2 1 4 4 C 1.53187 * 109.58953 * 120.43223 * 2 1 3 5 5 C 1.53040 * 109.31105 * 174.42352 * 4 2 1 6 6 C 1.53045 * 109.53935 * 298.63061 * 5 4 2 7 7 H 1.09000 * 109.50027 * 181.31789 * 6 5 4 8 8 N 1.46497 * 109.52438 * 301.40004 * 6 5 4 9 9 C 1.34771 * 120.00202 * 204.84913 * 8 6 5 10 10 O 1.21550 * 119.99840 * 0.02562 * 9 8 6 11 11 C 1.47860 * 120.00266 * 179.97438 * 9 8 6 12 12 C 1.38951 * 121.42347 * 354.16748 * 11 9 8 13 13 N 1.32580 * 120.34397 * 179.97438 * 12 11 9 14 14 N 1.28378 * 123.43087 * 0.02562 * 13 12 11 15 15 C 1.33469 * 121.85504 * 0.02562 * 14 13 12 16 16 C 1.40578 * 121.73782 * 179.97438 * 15 14 13 17 17 C 1.36123 * 119.61222 * 180.02562 * 16 15 14 18 18 C 1.39372 * 121.12549 * 359.97438 * 17 16 15 19 19 C 1.36347 * 120.88729 * 0.02562 * 18 17 16 20 20 C 1.39851 * 119.49961 * 359.72510 * 19 18 17 21 21 C 1.53195 * 109.31045 * 61.36706 * 6 5 4 22 22 N 1.46926 * 109.58444 * 239.72307 * 2 1 3 23 23 C 1.36938 * 120.63162 * 6.61789 * 22 2 1 24 24 H 1.07994 * 120.00429 * 329.55576 * 23 22 2 25 25 C 1.38821 * 119.99740 * 149.55282 * 23 22 2 26 26 N 1.31619 * 120.00169 * 342.98423 * 25 23 22 27 27 Si 1.86796 * 119.99602 * 162.98855 * 25 23 22 28 28 H 1.48498 * 109.47334 * 94.95991 * 27 25 23 29 29 H 1.48504 * 109.46715 * 214.95478 * 27 25 23 30 30 H 1.48500 * 109.47407 * 334.95082 * 27 25 23 31 31 H 1.09005 * 109.46736 * 180.28312 * 1 2 3 32 32 H 1.08997 * 109.46842 * 300.27727 * 1 2 3 33 33 H 1.09002 * 109.47562 * 60.28068 * 1 2 3 34 34 H 1.09003 * 109.49703 * 294.36707 * 4 2 1 35 35 H 1.08995 * 109.49589 * 54.46983 * 4 2 1 36 36 H 1.09002 * 109.45901 * 178.61075 * 5 4 2 37 37 H 1.09002 * 109.45102 * 58.64702 * 5 4 2 38 38 H 0.97004 * 119.99700 * 24.85420 * 8 6 5 39 39 H 1.07995 * 119.83083 * 0.02562 * 12 11 9 40 40 H 1.08005 * 120.19783 * 359.97438 * 16 15 14 41 41 H 1.07994 * 119.43316 * 179.97438 * 17 16 15 42 42 H 1.07998 * 119.55122 * 180.02562 * 18 17 16 43 43 H 1.07998 * 120.24788 * 180.02562 * 19 18 17 44 44 H 1.08996 * 109.58746 * 185.57691 * 21 6 5 45 45 H 1.09004 * 109.58806 * 65.14999 * 21 6 5 46 46 H 0.97000 * 120.00188 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8953 1.0270 0.0000 4 6 2.0436 -0.7310 1.2444 5 6 3.5676 -0.8494 1.1688 6 6 3.9570 -1.6656 -0.0659 7 1 5.0413 -1.7694 -0.1063 8 7 3.3413 -2.9927 0.0103 9 6 3.8966 -4.0318 -0.6442 10 8 4.9085 -3.8679 -1.2972 11 6 3.2754 -5.3714 -0.5668 12 6 2.1906 -5.6200 0.2651 13 7 1.6499 -6.8294 0.3173 14 7 2.0752 -7.8246 -0.3731 15 6 3.1108 -7.7119 -1.2075 16 6 3.5748 -8.8036 -1.9619 17 6 4.6352 -8.6402 -2.7996 18 6 5.2715 -7.4064 -2.9241 19 6 4.8490 -6.3256 -2.2083 20 6 3.7589 -6.4567 -1.3420 21 6 3.4650 -0.9452 -1.3252 22 7 2.0225 -0.6979 -1.1954 23 6 1.1536 -1.1099 -2.1704 24 1 0.1425 -1.3866 -1.9109 25 6 1.5726 -1.1717 -3.4925 26 7 2.6615 -0.5350 -3.8682 27 14 0.5908 -2.1586 -4.7380 28 1 -0.3529 -1.2592 -5.4491 29 1 1.5172 -2.7791 -5.7189 30 1 -0.1722 -3.2220 -4.0365 31 1 -0.3633 -1.0277 0.0051 32 1 -0.3633 0.5181 0.8875 33 1 -0.3634 0.5095 -0.8925 34 1 1.7662 -0.1696 2.1366 35 1 1.6031 -1.7270 1.2889 36 1 3.9379 -1.3474 2.0649 37 1 4.0060 0.1461 1.0992 38 1 2.5338 -3.1235 0.5317 39 1 1.7853 -4.8237 0.8717 40 1 3.0933 -9.7666 -1.8768 41 1 4.9896 -9.4808 -3.3775 42 1 6.1103 -7.3052 -3.5967 43 1 5.3493 -5.3743 -2.3131 44 1 3.6518 -1.5688 -2.1994 45 1 3.9902 0.0040 -1.4319 46 1 2.9540 -0.5779 -4.7921 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071852069.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:09 Heat of formation + Delta-G solvation = 71.866545 kcal Electronic energy + Delta-G solvation = -30484.877965 eV Core-core repulsion = 26568.800650 eV Total energy + Delta-G solvation = -3916.077315 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.50568 -39.56641 -37.92962 -37.68981 -34.37187 -33.72055 -32.83158 -31.67972 -31.16376 -30.11050 -29.87729 -26.56766 -25.71833 -24.94698 -24.39917 -22.98527 -22.27592 -21.11306 -20.57268 -18.98927 -18.67859 -18.19126 -17.68603 -16.40001 -15.76239 -15.45093 -15.42079 -15.19428 -15.12760 -14.66156 -14.25207 -14.02384 -13.92382 -13.68489 -13.43733 -13.23425 -12.93590 -12.59588 -12.53227 -12.44399 -12.04478 -11.92244 -11.36684 -11.21749 -11.07891 -10.95642 -10.92348 -10.76439 -10.69890 -10.46051 -10.40539 -10.34056 -10.03525 -9.62772 -9.55971 -9.46187 -9.27386 -8.67714 -8.51356 -8.39763 -6.66288 -5.82896 -3.26240 -0.32745 0.54913 1.54693 2.62501 3.12576 3.31704 3.34306 3.41898 3.42803 3.88068 3.93076 4.21978 4.36318 4.44773 4.50990 4.68902 4.84746 5.00339 5.13435 5.21907 5.25664 5.30726 5.40937 5.41508 5.50063 5.50412 5.68170 5.88343 5.90964 6.01901 6.03157 6.07146 6.20293 6.25031 6.28224 6.29937 6.36651 6.40864 6.51678 6.53848 6.65468 6.75833 6.99316 7.05199 7.23913 7.53197 7.76900 7.80027 8.40612 8.43349 8.51485 9.16422 9.80769 10.37342 11.25368 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.010911 B = 0.004530 C = 0.003983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2565.632545 B = 6179.757531 C = 7027.557369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.165 3.835 3 H 0.026 0.974 4 C -0.131 4.131 5 C -0.119 4.119 6 C 0.117 3.883 7 H 0.081 0.919 8 N -0.683 5.683 9 C 0.562 3.438 10 O -0.529 6.529 11 C -0.093 4.093 12 C 0.044 3.956 13 N -0.223 5.223 14 N -0.195 5.195 15 C 0.060 3.940 16 C -0.086 4.086 17 C -0.095 4.095 18 C -0.101 4.101 19 C -0.099 4.099 20 C -0.027 4.027 21 C 0.163 3.837 22 N -0.582 5.582 23 C -0.253 4.253 24 H 0.068 0.932 25 C 0.010 3.990 26 N -0.896 5.896 27 Si 0.890 3.110 28 H -0.286 1.286 29 H -0.290 1.290 30 H -0.280 1.280 31 H 0.051 0.949 32 H 0.037 0.963 33 H 0.061 0.939 34 H 0.055 0.945 35 H 0.053 0.947 36 H 0.053 0.947 37 H 0.074 0.926 38 H 0.397 0.603 39 H 0.174 0.826 40 H 0.143 0.857 41 H 0.135 0.865 42 H 0.135 0.865 43 H 0.175 0.825 44 H 0.092 0.908 45 H 0.030 0.970 46 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.243 -9.924 8.157 13.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.058 3.942 3 H 0.044 0.956 4 C -0.171 4.171 5 C -0.157 4.157 6 C 0.012 3.988 7 H 0.099 0.901 8 N -0.333 5.333 9 C 0.347 3.653 10 O -0.407 6.407 11 C -0.109 4.109 12 C -0.108 4.108 13 N -0.075 5.075 14 N -0.050 5.050 15 C -0.069 4.069 16 C -0.107 4.107 17 C -0.116 4.116 18 C -0.120 4.120 19 C -0.117 4.117 20 C -0.036 4.036 21 C 0.036 3.964 22 N -0.305 5.305 23 C -0.383 4.383 24 H 0.085 0.915 25 C -0.190 4.190 26 N -0.539 5.539 27 Si 0.720 3.280 28 H -0.213 1.213 29 H -0.216 1.216 30 H -0.205 1.205 31 H 0.070 0.930 32 H 0.056 0.944 33 H 0.080 0.920 34 H 0.074 0.926 35 H 0.072 0.928 36 H 0.072 0.928 37 H 0.092 0.908 38 H 0.233 0.767 39 H 0.191 0.809 40 H 0.161 0.839 41 H 0.153 0.847 42 H 0.153 0.847 43 H 0.192 0.808 44 H 0.110 0.890 45 H 0.048 0.952 46 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 3.884 -10.615 8.191 13.960 hybrid contribution 0.076 0.433 -1.187 1.265 sum 3.960 -10.183 7.005 12.978 Atomic orbital electron populations 1.21798 0.96024 1.01245 1.00290 1.20477 0.92999 0.93671 0.87045 0.95627 1.22079 0.95013 1.00677 0.99315 1.21704 0.97153 1.00293 0.96565 1.21919 0.97111 0.81040 0.98762 0.90140 1.45792 1.29096 1.08691 1.49722 1.17616 0.84269 0.83173 0.80229 1.90601 1.25118 1.84142 1.40885 1.21299 0.96968 0.95418 0.97204 1.24237 0.92689 0.96866 0.97014 1.72977 1.22510 0.97167 1.14888 1.73560 1.07825 1.22007 1.01571 1.20356 0.95045 0.93698 0.97840 1.20733 0.96807 0.97652 0.95488 1.21097 0.95074 0.97991 0.97431 1.21275 0.99795 0.92469 0.98500 1.22018 0.94468 1.01963 0.93238 1.18713 0.96434 0.92318 0.96161 1.21148 0.84071 0.97086 0.94069 1.44049 1.02571 1.64900 1.19014 1.19049 0.95364 1.37997 0.85847 0.91482 1.25049 0.97847 0.99100 0.96974 1.70000 1.25223 1.42120 1.16569 0.86477 0.79483 0.80316 0.81740 1.21332 1.21568 1.20532 0.92970 0.94365 0.91981 0.92584 0.92795 0.92822 0.90764 0.76737 0.80934 0.83915 0.84702 0.84735 0.80813 0.88974 0.95249 0.93642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 23. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.37 7.95 37.16 0.30 -2.07 16 2 C 0.16 3.07 3.50 -67.60 -0.24 2.83 16 3 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 4 C -0.13 -1.93 5.21 -26.61 -0.14 -2.07 16 5 C -0.12 -1.70 5.59 -26.69 -0.15 -1.85 16 6 C 0.12 2.03 2.81 -67.81 -0.19 1.84 16 7 H 0.08 1.41 7.58 -51.93 -0.39 1.02 16 8 N -0.68 -11.25 4.88 -54.63 -0.27 -11.52 16 9 C 0.56 10.00 7.73 -12.32 -0.10 9.91 16 10 O -0.53 -10.57 13.32 5.32 0.07 -10.50 16 11 C -0.09 -1.53 5.95 -104.31 -0.62 -2.15 16 12 C 0.04 0.66 10.80 -16.96 -0.18 0.48 16 13 N -0.22 -3.57 11.47 30.73 0.35 -3.22 16 14 N -0.19 -3.12 11.52 32.21 0.37 -2.75 16 15 C 0.06 0.90 6.69 -84.87 -0.57 0.33 16 16 C -0.09 -1.00 10.01 -39.46 -0.39 -1.39 16 17 C -0.10 -0.95 9.94 -39.92 -0.40 -1.35 16 18 C -0.10 -1.15 9.96 -39.84 -0.40 -1.55 16 19 C -0.10 -1.47 9.28 -39.66 -0.37 -1.84 16 20 C -0.03 -0.44 5.77 -106.50 -0.61 -1.05 16 21 C 0.16 3.64 4.89 -3.71 -0.02 3.62 16 22 N -0.58 -13.16 2.90 -164.77 -0.48 -13.63 16 23 C -0.25 -6.47 8.54 -15.06 -0.13 -6.60 16 24 H 0.07 1.70 6.27 -52.49 -0.33 1.37 16 25 C 0.01 0.27 4.89 -17.43 -0.09 0.18 16 26 N -0.90 -25.58 11.38 55.49 0.63 -24.95 16 27 Si 0.89 21.85 29.59 -169.99 -5.03 16.83 16 28 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 29 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 30 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 31 H 0.05 0.91 7.44 -51.93 -0.39 0.53 16 32 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.06 1.20 7.63 -51.93 -0.40 0.81 16 34 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.05 0.77 6.41 -51.93 -0.33 0.43 16 36 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 37 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 38 H 0.40 5.78 4.97 -40.82 -0.20 5.57 16 39 H 0.17 2.04 6.56 -52.49 -0.34 1.69 16 40 H 0.14 1.31 8.06 -52.48 -0.42 0.89 16 41 H 0.14 0.87 8.06 -52.49 -0.42 0.45 16 42 H 0.13 1.18 8.06 -52.49 -0.42 0.76 16 43 H 0.17 2.88 5.14 -52.49 -0.27 2.61 16 44 H 0.09 2.44 6.25 -51.93 -0.32 2.12 16 45 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 46 H 0.25 7.12 8.31 -40.82 -0.34 6.79 16 LS Contribution 365.44 15.07 5.51 5.51 Total: -1.00 -31.17 365.44 -9.05 -40.22 By element: Atomic # 1 Polarization: 12.69 SS G_CDS: -5.92 Total: 6.77 kcal Atomic # 6 Polarization: 1.55 SS G_CDS: -4.29 Total: -2.74 kcal Atomic # 7 Polarization: -56.68 SS G_CDS: 0.61 Total: -56.07 kcal Atomic # 8 Polarization: -10.57 SS G_CDS: 0.07 Total: -10.50 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.03 Total: 16.83 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -31.17 -9.05 -40.22 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071852069.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.082 kcal (2) G-P(sol) polarization free energy of solvation -31.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.216 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds