Wall clock time and date at job start Sat Apr 11 2020 06:08:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.58212 * 2 1 4 4 C 1.53187 * 109.58953 * 120.43223 * 2 1 3 5 5 C 1.53040 * 109.31105 * 174.42352 * 4 2 1 6 6 C 1.53045 * 109.53935 * 298.63061 * 5 4 2 7 7 H 1.09000 * 109.50027 * 181.31789 * 6 5 4 8 8 N 1.46497 * 109.52438 * 301.40004 * 6 5 4 9 9 C 1.34771 * 120.00202 * 204.84913 * 8 6 5 10 10 O 1.21550 * 119.99840 * 0.02562 * 9 8 6 11 11 C 1.47860 * 120.00266 * 179.97438 * 9 8 6 12 12 C 1.38951 * 121.42347 * 354.16748 * 11 9 8 13 13 N 1.32580 * 120.34397 * 179.97438 * 12 11 9 14 14 N 1.28378 * 123.43087 * 0.02562 * 13 12 11 15 15 C 1.33469 * 121.85504 * 0.02562 * 14 13 12 16 16 C 1.40578 * 121.73782 * 179.97438 * 15 14 13 17 17 C 1.36123 * 119.61222 * 180.02562 * 16 15 14 18 18 C 1.39372 * 121.12549 * 359.97438 * 17 16 15 19 19 C 1.36347 * 120.88729 * 0.02562 * 18 17 16 20 20 C 1.39851 * 119.49961 * 359.72510 * 19 18 17 21 21 C 1.53195 * 109.31045 * 61.36706 * 6 5 4 22 22 N 1.46926 * 109.58444 * 239.72307 * 2 1 3 23 23 C 1.36938 * 120.63162 * 6.61789 * 22 2 1 24 24 H 1.07994 * 120.00429 * 329.55576 * 23 22 2 25 25 C 1.38821 * 119.99740 * 149.55282 * 23 22 2 26 26 N 1.31619 * 120.00169 * 342.98423 * 25 23 22 27 27 Si 1.86796 * 119.99602 * 162.98855 * 25 23 22 28 28 H 1.48498 * 109.47334 * 94.95991 * 27 25 23 29 29 H 1.48504 * 109.46715 * 214.95478 * 27 25 23 30 30 H 1.48500 * 109.47407 * 334.95082 * 27 25 23 31 31 H 1.09005 * 109.46736 * 180.28312 * 1 2 3 32 32 H 1.08997 * 109.46842 * 300.27727 * 1 2 3 33 33 H 1.09002 * 109.47562 * 60.28068 * 1 2 3 34 34 H 1.09003 * 109.49703 * 294.36707 * 4 2 1 35 35 H 1.08995 * 109.49589 * 54.46983 * 4 2 1 36 36 H 1.09002 * 109.45901 * 178.61075 * 5 4 2 37 37 H 1.09002 * 109.45102 * 58.64702 * 5 4 2 38 38 H 0.97004 * 119.99700 * 24.85420 * 8 6 5 39 39 H 1.07995 * 119.83083 * 0.02562 * 12 11 9 40 40 H 1.08005 * 120.19783 * 359.97438 * 16 15 14 41 41 H 1.07994 * 119.43316 * 179.97438 * 17 16 15 42 42 H 1.07998 * 119.55122 * 180.02562 * 18 17 16 43 43 H 1.07998 * 120.24788 * 180.02562 * 19 18 17 44 44 H 1.08996 * 109.58746 * 185.57691 * 21 6 5 45 45 H 1.09004 * 109.58806 * 65.14999 * 21 6 5 46 46 H 0.97000 * 120.00188 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8953 1.0270 0.0000 4 6 2.0436 -0.7310 1.2444 5 6 3.5676 -0.8494 1.1688 6 6 3.9570 -1.6656 -0.0659 7 1 5.0413 -1.7694 -0.1063 8 7 3.3413 -2.9927 0.0103 9 6 3.8966 -4.0318 -0.6442 10 8 4.9085 -3.8679 -1.2972 11 6 3.2754 -5.3714 -0.5668 12 6 2.1906 -5.6200 0.2651 13 7 1.6499 -6.8294 0.3173 14 7 2.0752 -7.8246 -0.3731 15 6 3.1108 -7.7119 -1.2075 16 6 3.5748 -8.8036 -1.9619 17 6 4.6352 -8.6402 -2.7996 18 6 5.2715 -7.4064 -2.9241 19 6 4.8490 -6.3256 -2.2083 20 6 3.7589 -6.4567 -1.3420 21 6 3.4650 -0.9452 -1.3252 22 7 2.0225 -0.6979 -1.1954 23 6 1.1536 -1.1099 -2.1704 24 1 0.1425 -1.3866 -1.9109 25 6 1.5726 -1.1717 -3.4925 26 7 2.6615 -0.5350 -3.8682 27 14 0.5908 -2.1586 -4.7380 28 1 -0.3529 -1.2592 -5.4491 29 1 1.5172 -2.7791 -5.7189 30 1 -0.1722 -3.2220 -4.0365 31 1 -0.3633 -1.0277 0.0051 32 1 -0.3633 0.5181 0.8875 33 1 -0.3634 0.5095 -0.8925 34 1 1.7662 -0.1696 2.1366 35 1 1.6031 -1.7270 1.2889 36 1 3.9379 -1.3474 2.0649 37 1 4.0060 0.1461 1.0992 38 1 2.5338 -3.1235 0.5317 39 1 1.7853 -4.8237 0.8717 40 1 3.0933 -9.7666 -1.8768 41 1 4.9896 -9.4808 -3.3775 42 1 6.1103 -7.3052 -3.5967 43 1 5.3493 -5.3743 -2.3131 44 1 3.6518 -1.5688 -2.1994 45 1 3.9902 0.0040 -1.4319 46 1 2.9540 -0.5779 -4.7921 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071852069.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:08 Heat of formation + Delta-G solvation = 52.022769 kcal Electronic energy + Delta-G solvation = -30485.738456 eV Core-core repulsion = 26568.800650 eV Total energy + Delta-G solvation = -3916.937806 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.64391 -40.95234 -39.24515 -38.89315 -35.92708 -34.92405 -34.52767 -32.74527 -32.46066 -31.78743 -31.11587 -28.01314 -27.20852 -26.48139 -25.47624 -24.14969 -23.85404 -22.38013 -22.07269 -20.49861 -19.73086 -19.41545 -18.83975 -18.20025 -17.22779 -16.73622 -16.70638 -16.55312 -16.22645 -15.93368 -15.90325 -15.54545 -15.33787 -14.93378 -14.74057 -14.54079 -14.47376 -14.03839 -13.67521 -13.54243 -13.46764 -13.01489 -12.93840 -12.89439 -12.66035 -12.57610 -12.44428 -12.18808 -12.11808 -12.04784 -11.86842 -11.59407 -11.55772 -11.21675 -11.07304 -10.60821 -10.52723 -10.48313 -10.11898 -9.48047 -8.58079 -7.86692 -5.30244 -1.46190 -0.51587 0.48824 1.33732 1.37940 1.43403 1.48037 1.86698 2.07819 2.45276 2.79873 2.82871 3.10010 3.27118 3.29165 3.34543 3.62025 3.66238 3.88308 3.98163 4.08315 4.10748 4.16180 4.19207 4.36222 4.45697 4.47176 4.63714 4.71073 4.73448 4.79936 4.91472 4.96438 4.99784 5.04549 5.09892 5.13229 5.23406 5.26606 5.31462 5.33043 5.56289 5.58572 5.61024 5.69740 5.71264 5.72611 6.42022 6.43240 7.08873 7.16736 7.34890 7.90911 8.41433 9.18568 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.010911 B = 0.004530 C = 0.003983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2565.632545 B = 6179.757531 C = 7027.557369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.154 3.846 3 H 0.015 0.985 4 C -0.121 4.121 5 C -0.111 4.111 6 C 0.128 3.872 7 H 0.076 0.924 8 N -0.676 5.676 9 C 0.560 3.440 10 O -0.560 6.560 11 C -0.119 4.119 12 C 0.053 3.947 13 N -0.243 5.243 14 N -0.202 5.202 15 C 0.043 3.957 16 C -0.084 4.084 17 C -0.082 4.082 18 C -0.077 4.077 19 C -0.140 4.140 20 C -0.042 4.042 21 C 0.172 3.828 22 N -0.594 5.594 23 C -0.236 4.236 24 H 0.072 0.928 25 C -0.047 4.047 26 N -0.931 5.931 27 Si 0.938 3.062 28 H -0.283 1.283 29 H -0.303 1.303 30 H -0.275 1.275 31 H 0.050 0.950 32 H 0.075 0.925 33 H 0.033 0.967 34 H 0.092 0.908 35 H 0.063 0.937 36 H 0.089 0.911 37 H 0.077 0.923 38 H 0.407 0.593 39 H 0.200 0.800 40 H 0.172 0.828 41 H 0.184 0.816 42 H 0.164 0.836 43 H 0.149 0.851 44 H 0.044 0.956 45 H 0.003 0.997 46 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.680 -12.063 9.999 16.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.049 3.951 3 H 0.033 0.967 4 C -0.160 4.160 5 C -0.149 4.149 6 C 0.022 3.978 7 H 0.094 0.906 8 N -0.326 5.326 9 C 0.346 3.654 10 O -0.440 6.440 11 C -0.135 4.135 12 C -0.100 4.100 13 N -0.095 5.095 14 N -0.057 5.057 15 C -0.087 4.087 16 C -0.105 4.105 17 C -0.102 4.102 18 C -0.096 4.096 19 C -0.158 4.158 20 C -0.051 4.051 21 C 0.045 3.955 22 N -0.318 5.318 23 C -0.366 4.366 24 H 0.090 0.910 25 C -0.242 4.242 26 N -0.578 5.578 27 Si 0.768 3.232 28 H -0.210 1.210 29 H -0.230 1.230 30 H -0.200 1.200 31 H 0.069 0.931 32 H 0.094 0.906 33 H 0.052 0.948 34 H 0.110 0.890 35 H 0.082 0.918 36 H 0.107 0.893 37 H 0.096 0.904 38 H 0.245 0.755 39 H 0.216 0.784 40 H 0.189 0.811 41 H 0.201 0.799 42 H 0.182 0.818 43 H 0.167 0.833 44 H 0.063 0.937 45 H 0.021 0.979 46 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 3.271 -12.758 10.093 16.593 hybrid contribution 0.312 1.035 -1.799 2.099 sum 3.583 -11.723 8.294 14.800 Atomic orbital electron populations 1.21734 0.94920 1.01295 1.00750 1.20778 0.94029 0.93315 0.87008 0.96694 1.21978 0.94819 1.01088 0.98132 1.21688 0.97209 1.00113 0.95855 1.21633 0.96767 0.81442 0.97941 0.90627 1.45680 1.29406 1.07971 1.49565 1.17930 0.83934 0.84017 0.79558 1.90594 1.26543 1.84802 1.42053 1.21230 0.98310 0.94848 0.99074 1.24540 0.91806 0.97139 0.96475 1.72933 1.23237 0.97539 1.15760 1.73456 1.08159 1.22349 1.01701 1.20746 0.95041 0.94363 0.98525 1.21196 0.97033 0.97703 0.94573 1.21593 0.93636 0.98476 0.96540 1.21733 0.99460 0.91935 0.96514 1.21898 0.95676 1.02493 0.95762 1.18977 0.96913 0.92866 0.96378 1.20840 0.84225 0.95463 0.94940 1.44256 1.02219 1.65605 1.19713 1.19335 0.95632 1.35450 0.86220 0.91014 1.25623 0.98999 1.00901 0.98719 1.70143 1.27078 1.44511 1.16025 0.85697 0.78178 0.79317 0.80019 1.21028 1.22990 1.19994 0.93069 0.90613 0.94820 0.88980 0.91840 0.89274 0.90444 0.75459 0.78358 0.81104 0.79891 0.81812 0.83321 0.93746 0.97945 0.94739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.25 7.95 71.98 0.57 -3.68 16 2 C 0.15 5.52 3.50 44.97 0.16 5.68 16 3 H 0.02 0.59 8.14 -2.39 -0.02 0.57 16 4 C -0.12 -3.13 5.21 30.67 0.16 -2.97 16 5 C -0.11 -2.88 5.59 30.62 0.17 -2.71 16 6 C 0.13 4.46 2.81 45.07 0.13 4.58 16 7 H 0.08 2.72 7.58 -2.39 -0.02 2.70 16 8 N -0.68 -22.16 4.88 -445.02 -2.17 -24.33 16 9 C 0.56 20.60 7.73 86.79 0.67 21.27 16 10 O -0.56 -23.81 13.32 -3.87 -0.05 -23.86 16 11 C -0.12 -3.99 5.95 -19.66 -0.12 -4.10 16 12 C 0.05 1.54 10.80 84.75 0.92 2.46 16 13 N -0.24 -7.62 11.47 -56.69 -0.65 -8.27 16 14 N -0.20 -6.32 11.52 -51.99 -0.60 -6.92 16 15 C 0.04 1.26 6.69 40.37 0.27 1.53 16 16 C -0.08 -1.72 10.01 22.35 0.22 -1.49 16 17 C -0.08 -1.32 9.94 22.05 0.22 -1.11 16 18 C -0.08 -1.60 9.96 22.10 0.22 -1.38 16 19 C -0.14 -4.25 9.28 22.22 0.21 -4.04 16 20 C -0.04 -1.37 5.77 -21.08 -0.12 -1.49 16 21 C 0.17 8.04 4.89 86.36 0.42 8.46 16 22 N -0.59 -27.24 2.90 -675.21 -1.96 -29.20 16 23 C -0.24 -12.28 8.54 84.04 0.72 -11.57 16 24 H 0.07 3.63 6.27 -2.91 -0.02 3.62 16 25 C -0.05 -2.64 4.89 84.86 0.42 -2.23 16 26 N -0.93 -56.14 11.38 21.65 0.25 -55.89 16 27 Si 0.94 46.42 29.59 68.60 2.03 48.44 16 28 H -0.28 -13.72 7.11 99.48 0.71 -13.01 16 29 H -0.30 -15.48 7.11 99.48 0.71 -14.77 16 30 H -0.27 -13.17 7.11 99.48 0.71 -12.47 16 31 H 0.05 1.68 7.44 -2.38 -0.02 1.66 16 32 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 33 H 0.03 1.27 7.63 -2.39 -0.02 1.25 16 34 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 35 H 0.06 1.55 6.41 -2.39 -0.02 1.54 16 36 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 37 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 38 H 0.41 11.25 4.97 -92.71 -0.46 10.79 16 39 H 0.20 4.39 6.56 -2.91 -0.02 4.37 16 40 H 0.17 2.47 8.06 -2.91 -0.02 2.45 16 41 H 0.18 1.25 8.06 -2.91 -0.02 1.23 16 42 H 0.16 2.39 8.06 -2.91 -0.02 2.37 16 43 H 0.15 5.29 5.14 -2.91 -0.01 5.28 16 44 H 0.04 2.50 6.25 -2.39 -0.01 2.49 16 45 H 0.00 0.13 8.14 -2.38 -0.02 0.11 16 46 H 0.24 14.56 8.31 -92.71 -0.77 13.78 16 Total: -1.00 -74.06 365.44 2.64 -71.41 By element: Atomic # 1 Polarization: 20.85 SS G_CDS: 0.57 Total: 21.42 kcal Atomic # 6 Polarization: 1.97 SS G_CDS: 5.23 Total: 7.20 kcal Atomic # 7 Polarization: -119.48 SS G_CDS: -5.13 Total: -124.61 kcal Atomic # 8 Polarization: -23.81 SS G_CDS: -0.05 Total: -23.86 kcal Atomic # 14 Polarization: 46.42 SS G_CDS: 2.03 Total: 48.44 kcal Total: -74.06 2.64 -71.41 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071852069.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.438 kcal (2) G-P(sol) polarization free energy of solvation -74.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.415 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds