Wall clock time and date at job start Sat Apr 11 2020 06:08:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.58113 * 2 1 4 4 C 1.53191 * 109.58494 * 120.28119 * 2 1 3 5 5 C 1.53046 * 109.31188 * 174.42613 * 4 2 1 6 6 C 1.53041 * 109.53487 * 298.63347 * 5 4 2 7 7 H 1.09003 * 109.49505 * 181.34451 * 6 5 4 8 8 N 1.46492 * 109.50104 * 301.41498 * 6 5 4 9 9 C 1.34773 * 120.00347 * 205.00617 * 8 6 5 10 10 O 1.21598 * 119.99609 * 359.97438 * 9 8 6 11 11 C 1.47507 * 120.00507 * 179.97438 * 9 8 6 12 12 C 1.38679 * 120.33553 * 0.02562 * 11 9 8 13 13 C 1.38983 * 120.62858 * 180.02562 * 12 11 9 14 14 C 1.36222 * 121.14888 * 359.97348 * 13 12 11 15 15 C 1.40692 * 120.16401 * 0.02562 * 14 13 12 16 16 N 1.33764 * 120.98207 * 179.97438 * 15 14 13 17 17 C 1.31329 * 119.73506 * 179.97438 * 16 15 14 18 18 C 1.39642 * 120.68358 * 0.02562 * 17 16 15 19 19 N 1.31455 * 120.64215 * 0.02562 * 18 17 16 20 20 C 1.33490 * 119.71842 * 359.97338 * 19 18 17 21 21 C 1.53194 * 109.31000 * 61.36774 * 6 5 4 22 22 N 1.46923 * 108.77736 * 305.35946 * 21 6 5 23 23 C 1.36942 * 120.63354 * 233.59402 * 22 21 6 24 24 H 1.07999 * 120.00095 * 150.20896 * 23 22 21 25 25 C 1.38806 * 119.99676 * 330.20251 * 23 22 21 26 26 N 1.31617 * 120.00310 * 344.47427 * 25 23 22 27 27 Si 1.86801 * 119.99705 * 164.47336 * 25 23 22 28 28 H 1.48494 * 109.47311 * 0.02562 * 27 25 23 29 29 H 1.48512 * 109.46811 * 120.00272 * 27 25 23 30 30 H 1.48493 * 109.47213 * 240.00007 * 27 25 23 31 31 H 1.08998 * 109.47203 * 299.71616 * 1 2 3 32 32 H 1.08996 * 109.47379 * 59.71723 * 1 2 3 33 33 H 1.09000 * 109.46793 * 179.72018 * 1 2 3 34 34 H 1.08998 * 109.49815 * 54.47140 * 4 2 1 35 35 H 1.09005 * 109.49859 * 294.37358 * 4 2 1 36 36 H 1.09000 * 109.45977 * 178.61623 * 5 4 2 37 37 H 1.09001 * 109.44718 * 58.64387 * 5 4 2 38 38 H 0.97000 * 120.00165 * 24.99791 * 8 6 5 39 39 H 1.07998 * 119.68613 * 359.97438 * 12 11 9 40 40 H 1.08003 * 119.43019 * 179.97438 * 13 12 11 41 41 H 1.07997 * 119.91988 * 179.97438 * 14 13 12 42 42 H 1.08002 * 119.65970 * 179.97438 * 17 16 15 43 43 H 1.07996 * 119.68297 * 179.97438 * 18 17 16 44 44 H 1.08999 * 109.59311 * 65.15221 * 21 6 5 45 45 H 1.09001 * 109.58288 * 185.57414 * 21 6 5 46 46 H 0.97002 * 120.00487 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8953 1.0270 0.0000 4 6 2.0435 -0.7278 1.2464 5 6 3.5675 -0.8464 1.1713 6 6 3.9569 -1.6657 -0.0613 7 1 5.0412 -1.7700 -0.1010 8 7 3.3406 -2.9923 0.0186 9 6 3.8972 -4.0342 -0.6303 10 8 4.9108 -3.8729 -1.2825 11 6 3.2770 -5.3701 -0.5494 12 6 2.1208 -5.5617 0.1919 13 6 1.5315 -6.8179 0.2728 14 6 2.0695 -7.8912 -0.3708 15 6 3.2419 -7.7430 -1.1344 16 7 3.7843 -8.7859 -1.7726 17 6 4.8789 -8.6197 -2.4790 18 6 5.4840 -7.3646 -2.5709 19 7 4.9692 -6.3257 -1.9514 20 6 3.8570 -6.4710 -1.2277 21 6 3.4651 -0.9485 -1.3224 22 7 2.0226 -0.7010 -1.1936 23 6 1.1538 -1.1155 -2.1676 24 1 0.1396 -1.3817 -1.9088 25 6 1.5766 -1.1933 -3.4874 26 7 2.6874 -0.5931 -3.8590 27 14 0.5691 -2.1500 -4.7360 28 1 -0.6266 -2.7263 -4.0702 29 1 0.1371 -1.2387 -5.8261 30 1 1.3955 -3.2449 -5.3045 31 1 -0.3633 0.5094 0.8925 32 1 -0.3634 0.5182 -0.8874 33 1 -0.3633 -1.0277 -0.0050 34 1 1.6029 -1.7236 1.2936 35 1 1.7660 -0.1640 2.1371 36 1 3.9378 -1.3421 2.0687 37 1 4.0059 0.1490 1.0990 38 1 2.5320 -3.1209 0.5387 39 1 1.6744 -4.7271 0.7121 40 1 0.6315 -6.9454 0.8560 41 1 1.5954 -8.8585 -0.2941 42 1 5.3161 -9.4627 -2.9935 43 1 6.3840 -7.2463 -3.1560 44 1 3.9903 0.0003 -1.4316 45 1 3.6519 -1.5744 -2.1950 46 1 2.9832 -0.6478 -4.7813 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071933961.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:30 Heat of formation + Delta-G solvation = 67.210405 kcal Electronic energy + Delta-G solvation = -30473.315884 eV Core-core repulsion = 26557.036663 eV Total energy + Delta-G solvation = -3916.279221 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.45190 -39.42598 -37.74760 -37.01235 -34.66777 -34.04809 -32.72576 -31.46493 -30.86177 -30.03819 -29.70768 -26.24619 -25.49179 -24.98429 -24.15083 -23.47225 -22.15724 -20.68078 -20.27820 -19.04906 -18.56581 -18.27261 -16.94913 -16.46102 -16.18157 -15.32101 -15.23710 -15.10420 -14.86196 -14.37692 -14.13492 -14.02266 -13.83636 -13.80393 -13.39199 -13.08925 -12.80876 -12.49022 -12.26121 -12.01411 -11.86967 -11.82856 -11.56020 -11.52530 -11.19328 -11.15681 -10.94009 -10.86378 -10.70587 -10.36748 -10.30799 -9.95162 -9.59586 -9.47451 -9.41216 -9.06980 -8.81685 -8.63737 -8.42515 -8.26321 -6.56959 -5.72769 -3.17098 -0.00931 0.49715 1.71110 2.61197 3.38866 3.45527 3.48265 3.51503 3.65524 3.93856 4.12323 4.17209 4.30347 4.51860 4.61857 4.75408 4.92080 5.00169 5.15423 5.28176 5.32324 5.37323 5.45110 5.51844 5.61024 5.66144 5.72650 5.85578 6.01943 6.05633 6.09918 6.12629 6.17757 6.33237 6.35463 6.44949 6.51348 6.54148 6.61226 6.71088 6.92803 7.05815 7.13278 7.24573 7.43002 7.72708 7.76608 7.86418 8.14487 8.51888 8.86941 9.25995 9.90648 10.46831 11.35120 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.011029 B = 0.004465 C = 0.003977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2538.063934 B = 6268.814949 C = 7037.990045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.165 3.835 3 H 0.025 0.975 4 C -0.130 4.130 5 C -0.119 4.119 6 C 0.121 3.879 7 H 0.076 0.924 8 N -0.697 5.697 9 C 0.549 3.451 10 O -0.504 6.504 11 C -0.081 4.081 12 C -0.065 4.065 13 C -0.103 4.103 14 C -0.069 4.069 15 C 0.071 3.929 16 N -0.430 5.430 17 C 0.073 3.927 18 C 0.070 3.930 19 N -0.380 5.380 20 C 0.111 3.889 21 C 0.162 3.838 22 N -0.582 5.582 23 C -0.250 4.250 24 H 0.068 0.932 25 C 0.008 3.992 26 N -0.896 5.896 27 Si 0.892 3.108 28 H -0.278 1.278 29 H -0.290 1.290 30 H -0.291 1.291 31 H 0.036 0.964 32 H 0.060 0.940 33 H 0.051 0.949 34 H 0.053 0.947 35 H 0.053 0.947 36 H 0.051 0.949 37 H 0.071 0.929 38 H 0.391 0.609 39 H 0.140 0.860 40 H 0.141 0.859 41 H 0.141 0.859 42 H 0.174 0.826 43 H 0.174 0.826 44 H 0.025 0.975 45 H 0.095 0.905 46 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.540 -12.173 10.859 16.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.058 3.942 3 H 0.042 0.958 4 C -0.169 4.169 5 C -0.157 4.157 6 C 0.015 3.985 7 H 0.094 0.906 8 N -0.349 5.349 9 C 0.334 3.666 10 O -0.379 6.379 11 C -0.086 4.086 12 C -0.086 4.086 13 C -0.122 4.122 14 C -0.089 4.089 15 C -0.054 4.054 16 N -0.144 5.144 17 C -0.102 4.102 18 C -0.105 4.105 19 N -0.093 5.093 20 C -0.014 4.014 21 C 0.036 3.964 22 N -0.305 5.305 23 C -0.380 4.380 24 H 0.085 0.915 25 C -0.191 4.191 26 N -0.540 5.540 27 Si 0.722 3.278 28 H -0.203 1.203 29 H -0.217 1.217 30 H -0.218 1.218 31 H 0.055 0.945 32 H 0.079 0.921 33 H 0.070 0.930 34 H 0.072 0.928 35 H 0.071 0.929 36 H 0.070 0.930 37 H 0.089 0.911 38 H 0.227 0.773 39 H 0.158 0.842 40 H 0.159 0.841 41 H 0.159 0.841 42 H 0.191 0.809 43 H 0.191 0.809 44 H 0.043 0.957 45 H 0.113 0.887 46 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 1.186 -11.898 10.343 15.810 hybrid contribution -0.871 -0.586 -0.712 1.268 sum 0.316 -12.484 9.631 15.771 Atomic orbital electron populations 1.21791 0.96158 1.01193 1.00129 1.20458 0.92849 0.93646 0.87216 0.95789 1.22069 0.95190 1.00545 0.99130 1.21696 0.96973 1.00184 0.96818 1.21772 0.97010 0.81545 0.98183 0.90552 1.45771 1.29291 1.08502 1.51383 1.17732 0.84809 0.83388 0.80662 1.90832 1.23890 1.84225 1.38950 1.20135 0.96205 0.93769 0.98510 1.21577 0.93231 0.97948 0.95844 1.20922 1.00193 0.91922 0.99211 1.20908 0.93183 1.00052 0.94754 1.19520 0.97129 0.89983 0.98728 1.68667 1.09390 1.30876 1.05458 1.24064 0.92068 0.98603 0.95508 1.24271 1.00314 0.89162 0.96757 1.69061 1.07217 1.30446 1.02556 1.19340 0.93121 0.92548 0.96413 1.21171 0.83727 0.97024 0.94500 1.44042 1.02712 1.64657 1.19125 1.19080 0.94967 1.37933 0.86006 0.91477 1.25045 0.97692 0.99389 0.96981 1.69988 1.23864 1.43553 1.16626 0.86394 0.79628 0.79856 0.81929 1.20326 1.21719 1.21759 0.94462 0.92079 0.92993 0.92847 0.92852 0.93028 0.91062 0.77313 0.84226 0.84078 0.84120 0.80942 0.80871 0.95675 0.88652 0.93735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.39 7.95 37.16 0.30 -2.10 16 2 C 0.17 3.19 3.50 -67.60 -0.24 2.95 16 3 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 4 C -0.13 -2.00 5.21 -26.61 -0.14 -2.14 16 5 C -0.12 -1.84 5.59 -26.69 -0.15 -1.99 16 6 C 0.12 2.30 2.81 -67.81 -0.19 2.11 16 7 H 0.08 1.51 7.58 -51.93 -0.39 1.12 16 8 N -0.70 -12.58 4.86 -54.74 -0.27 -12.85 16 9 C 0.55 11.01 7.73 -12.48 -0.10 10.92 16 10 O -0.50 -11.96 14.85 5.28 0.08 -11.88 16 11 C -0.08 -1.40 5.90 -104.63 -0.62 -2.02 16 12 C -0.07 -0.85 9.52 -39.14 -0.37 -1.22 16 13 C -0.10 -1.08 9.93 -40.03 -0.40 -1.48 16 14 C -0.07 -0.82 9.97 -39.38 -0.39 -1.21 16 15 C 0.07 1.05 6.59 -84.81 -0.56 0.49 16 16 N -0.43 -5.89 10.46 -10.82 -0.11 -6.01 16 17 C 0.07 0.83 11.21 -17.24 -0.19 0.63 16 18 C 0.07 0.93 11.22 -17.19 -0.19 0.73 16 19 N -0.38 -6.88 8.56 -10.59 -0.09 -6.97 16 20 C 0.11 1.94 6.60 -84.53 -0.56 1.39 16 21 C 0.16 3.88 4.88 -3.71 -0.02 3.86 16 22 N -0.58 -13.71 2.90 -164.78 -0.48 -14.19 16 23 C -0.25 -6.58 8.58 -15.06 -0.13 -6.71 16 24 H 0.07 1.72 6.23 -52.49 -0.33 1.40 16 25 C 0.01 0.23 4.94 -17.43 -0.09 0.14 16 26 N -0.90 -26.63 11.23 55.49 0.62 -26.01 16 27 Si 0.89 22.40 29.58 -169.99 -5.03 17.37 16 28 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 29 H -0.29 -7.31 7.11 56.52 0.40 -6.90 16 30 H -0.29 -7.59 7.11 56.52 0.40 -7.19 16 31 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.06 1.20 7.67 -51.93 -0.40 0.80 16 33 H 0.05 0.91 7.40 -51.93 -0.38 0.53 16 34 H 0.05 0.79 6.40 -51.93 -0.33 0.46 16 35 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 36 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 38 H 0.39 6.10 4.80 -40.82 -0.20 5.91 16 39 H 0.14 1.50 6.37 -52.49 -0.33 1.17 16 40 H 0.14 0.97 8.06 -52.48 -0.42 0.55 16 41 H 0.14 1.29 8.06 -52.49 -0.42 0.87 16 42 H 0.17 1.16 8.06 -52.49 -0.42 0.74 16 43 H 0.17 1.65 8.06 -52.49 -0.42 1.23 16 44 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 45 H 0.10 2.72 6.15 -51.93 -0.32 2.40 16 46 H 0.25 7.38 8.31 -40.82 -0.34 7.04 16 LS Contribution 367.87 15.07 5.54 5.54 Total: -1.00 -35.37 367.87 -9.81 -45.18 By element: Atomic # 1 Polarization: 11.48 SS G_CDS: -6.05 Total: 5.43 kcal Atomic # 6 Polarization: 8.41 SS G_CDS: -4.03 Total: 4.38 kcal Atomic # 7 Polarization: -65.70 SS G_CDS: -0.33 Total: -66.02 kcal Atomic # 8 Polarization: -11.96 SS G_CDS: 0.08 Total: -11.88 kcal Atomic # 14 Polarization: 22.40 SS G_CDS: -5.03 Total: 17.37 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -35.37 -9.81 -45.18 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071933961.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.388 kcal (2) G-P(sol) polarization free energy of solvation -35.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.177 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds