Wall clock time and date at job start Sat Apr 11 2020 06:08:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.58113 * 2 1 4 4 C 1.53191 * 109.58494 * 120.28119 * 2 1 3 5 5 C 1.53046 * 109.31188 * 174.42613 * 4 2 1 6 6 C 1.53041 * 109.53487 * 298.63347 * 5 4 2 7 7 H 1.09003 * 109.49505 * 181.34451 * 6 5 4 8 8 N 1.46492 * 109.50104 * 301.41498 * 6 5 4 9 9 C 1.34773 * 120.00347 * 205.00617 * 8 6 5 10 10 O 1.21598 * 119.99609 * 359.97438 * 9 8 6 11 11 C 1.47507 * 120.00507 * 179.97438 * 9 8 6 12 12 C 1.38679 * 120.33553 * 0.02562 * 11 9 8 13 13 C 1.38983 * 120.62858 * 180.02562 * 12 11 9 14 14 C 1.36222 * 121.14888 * 359.97348 * 13 12 11 15 15 C 1.40692 * 120.16401 * 0.02562 * 14 13 12 16 16 N 1.33764 * 120.98207 * 179.97438 * 15 14 13 17 17 C 1.31329 * 119.73506 * 179.97438 * 16 15 14 18 18 C 1.39642 * 120.68358 * 0.02562 * 17 16 15 19 19 N 1.31455 * 120.64215 * 0.02562 * 18 17 16 20 20 C 1.33490 * 119.71842 * 359.97338 * 19 18 17 21 21 C 1.53194 * 109.31000 * 61.36774 * 6 5 4 22 22 N 1.46923 * 108.77736 * 305.35946 * 21 6 5 23 23 C 1.36942 * 120.63354 * 233.59402 * 22 21 6 24 24 H 1.07999 * 120.00095 * 150.20896 * 23 22 21 25 25 C 1.38806 * 119.99676 * 330.20251 * 23 22 21 26 26 N 1.31617 * 120.00310 * 344.47427 * 25 23 22 27 27 Si 1.86801 * 119.99705 * 164.47336 * 25 23 22 28 28 H 1.48494 * 109.47311 * 0.02562 * 27 25 23 29 29 H 1.48512 * 109.46811 * 120.00272 * 27 25 23 30 30 H 1.48493 * 109.47213 * 240.00007 * 27 25 23 31 31 H 1.08998 * 109.47203 * 299.71616 * 1 2 3 32 32 H 1.08996 * 109.47379 * 59.71723 * 1 2 3 33 33 H 1.09000 * 109.46793 * 179.72018 * 1 2 3 34 34 H 1.08998 * 109.49815 * 54.47140 * 4 2 1 35 35 H 1.09005 * 109.49859 * 294.37358 * 4 2 1 36 36 H 1.09000 * 109.45977 * 178.61623 * 5 4 2 37 37 H 1.09001 * 109.44718 * 58.64387 * 5 4 2 38 38 H 0.97000 * 120.00165 * 24.99791 * 8 6 5 39 39 H 1.07998 * 119.68613 * 359.97438 * 12 11 9 40 40 H 1.08003 * 119.43019 * 179.97438 * 13 12 11 41 41 H 1.07997 * 119.91988 * 179.97438 * 14 13 12 42 42 H 1.08002 * 119.65970 * 179.97438 * 17 16 15 43 43 H 1.07996 * 119.68297 * 179.97438 * 18 17 16 44 44 H 1.08999 * 109.59311 * 65.15221 * 21 6 5 45 45 H 1.09001 * 109.58288 * 185.57414 * 21 6 5 46 46 H 0.97002 * 120.00487 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8953 1.0270 0.0000 4 6 2.0435 -0.7278 1.2464 5 6 3.5675 -0.8464 1.1713 6 6 3.9569 -1.6657 -0.0613 7 1 5.0412 -1.7700 -0.1010 8 7 3.3406 -2.9923 0.0186 9 6 3.8972 -4.0342 -0.6303 10 8 4.9108 -3.8729 -1.2825 11 6 3.2770 -5.3701 -0.5494 12 6 2.1208 -5.5617 0.1919 13 6 1.5315 -6.8179 0.2728 14 6 2.0695 -7.8912 -0.3708 15 6 3.2419 -7.7430 -1.1344 16 7 3.7843 -8.7859 -1.7726 17 6 4.8789 -8.6197 -2.4790 18 6 5.4840 -7.3646 -2.5709 19 7 4.9692 -6.3257 -1.9514 20 6 3.8570 -6.4710 -1.2277 21 6 3.4651 -0.9485 -1.3224 22 7 2.0226 -0.7010 -1.1936 23 6 1.1538 -1.1155 -2.1676 24 1 0.1396 -1.3817 -1.9088 25 6 1.5766 -1.1933 -3.4874 26 7 2.6874 -0.5931 -3.8590 27 14 0.5691 -2.1500 -4.7360 28 1 -0.6266 -2.7263 -4.0702 29 1 0.1371 -1.2387 -5.8261 30 1 1.3955 -3.2449 -5.3045 31 1 -0.3633 0.5094 0.8925 32 1 -0.3634 0.5182 -0.8874 33 1 -0.3633 -1.0277 -0.0050 34 1 1.6029 -1.7236 1.2936 35 1 1.7660 -0.1640 2.1371 36 1 3.9378 -1.3421 2.0687 37 1 4.0059 0.1490 1.0990 38 1 2.5320 -3.1209 0.5387 39 1 1.6744 -4.7271 0.7121 40 1 0.6315 -6.9454 0.8560 41 1 1.5954 -8.8585 -0.2941 42 1 5.3161 -9.4627 -2.9935 43 1 6.3840 -7.2463 -3.1560 44 1 3.9903 0.0003 -1.4316 45 1 3.6519 -1.5744 -2.1950 46 1 2.9832 -0.6478 -4.7813 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071933961.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:28 Heat of formation + Delta-G solvation = 41.959065 kcal Electronic energy + Delta-G solvation = -30474.410864 eV Core-core repulsion = 26557.036663 eV Total energy + Delta-G solvation = -3917.374201 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.83 seconds Orbital eigenvalues (eV) -42.49163 -40.89987 -39.18742 -38.17781 -35.86046 -35.61095 -34.50485 -32.79191 -31.84383 -31.76967 -31.08343 -27.86839 -26.83266 -26.46397 -25.16961 -24.70808 -23.85993 -22.16746 -21.65853 -20.45875 -19.82283 -19.37612 -18.22993 -18.01269 -17.55313 -17.04135 -16.54461 -16.28620 -15.97120 -15.85355 -15.65381 -15.44652 -15.18618 -15.04506 -14.82437 -14.54179 -14.41895 -14.01501 -13.64312 -13.20548 -13.03111 -12.91839 -12.88850 -12.77540 -12.70639 -12.62293 -12.60818 -12.51507 -12.40804 -12.11445 -12.05333 -11.56168 -11.21072 -11.04958 -10.96063 -10.55073 -10.04064 -9.98903 -9.93784 -9.60661 -8.57130 -7.83276 -5.28254 -1.02787 -0.48469 0.61472 1.34403 1.38171 1.45506 1.65647 2.15380 2.33759 2.47371 3.01471 3.06764 3.16133 3.27433 3.33468 3.63690 3.71748 3.71965 3.94784 4.04578 4.10895 4.12694 4.20525 4.26392 4.37129 4.50979 4.58571 4.68527 4.76754 4.79328 4.85042 4.96940 4.98383 5.06876 5.10894 5.12915 5.13986 5.20823 5.29237 5.34338 5.60335 5.61172 5.63162 5.70730 5.74608 5.76886 6.25072 6.43791 6.68563 6.79296 7.17971 7.42727 7.93146 8.43933 9.21942 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.011029 B = 0.004465 C = 0.003977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2538.063934 B = 6268.814949 C = 7037.990045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.153 3.847 3 H 0.012 0.988 4 C -0.118 4.118 5 C -0.110 4.110 6 C 0.130 3.870 7 H 0.060 0.940 8 N -0.686 5.686 9 C 0.543 3.457 10 O -0.558 6.558 11 C -0.131 4.131 12 C -0.045 4.045 13 C -0.094 4.094 14 C -0.061 4.061 15 C 0.051 3.949 16 N -0.439 5.439 17 C 0.083 3.917 18 C 0.068 3.932 19 N -0.444 5.444 20 C 0.081 3.919 21 C 0.174 3.826 22 N -0.593 5.593 23 C -0.229 4.229 24 H 0.081 0.919 25 C -0.056 4.056 26 N -0.937 5.937 27 Si 0.943 3.057 28 H -0.254 1.254 29 H -0.293 1.293 30 H -0.313 1.313 31 H 0.076 0.924 32 H 0.032 0.968 33 H 0.055 0.945 34 H 0.067 0.933 35 H 0.093 0.907 36 H 0.086 0.914 37 H 0.072 0.928 38 H 0.405 0.595 39 H 0.163 0.837 40 H 0.192 0.808 41 H 0.172 0.828 42 H 0.222 0.778 43 H 0.200 0.800 44 H -0.006 1.006 45 H 0.041 0.959 46 H 0.240 0.760 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.385 -14.452 14.245 20.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.048 3.952 3 H 0.030 0.970 4 C -0.157 4.157 5 C -0.148 4.148 6 C 0.024 3.976 7 H 0.078 0.922 8 N -0.339 5.339 9 C 0.330 3.670 10 O -0.437 6.437 11 C -0.136 4.136 12 C -0.065 4.065 13 C -0.113 4.113 14 C -0.080 4.080 15 C -0.073 4.073 16 N -0.153 5.153 17 C -0.093 4.093 18 C -0.107 4.107 19 N -0.158 5.158 20 C -0.044 4.044 21 C 0.047 3.953 22 N -0.317 5.317 23 C -0.360 4.360 24 H 0.098 0.902 25 C -0.251 4.251 26 N -0.585 5.585 27 Si 0.773 3.227 28 H -0.177 1.177 29 H -0.220 1.220 30 H -0.242 1.242 31 H 0.095 0.905 32 H 0.052 0.948 33 H 0.074 0.926 34 H 0.085 0.915 35 H 0.111 0.889 36 H 0.105 0.895 37 H 0.090 0.910 38 H 0.244 0.756 39 H 0.181 0.819 40 H 0.209 0.791 41 H 0.190 0.810 42 H 0.239 0.761 43 H 0.217 0.783 44 H 0.012 0.988 45 H 0.060 0.940 46 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -1.820 -14.173 13.808 19.871 hybrid contribution 0.068 0.082 -1.745 1.748 sum -1.752 -14.092 12.064 18.633 Atomic orbital electron populations 1.21725 0.94462 1.01555 1.00806 1.20793 0.94333 0.93126 0.86968 0.97044 1.21965 0.94385 1.01262 0.98089 1.21669 0.97619 0.99727 0.95765 1.21455 0.96110 0.82315 0.97721 0.92207 1.45614 1.29609 1.07555 1.51108 1.18364 0.84251 0.84900 0.79522 1.90784 1.26374 1.85286 1.41234 1.20051 0.98885 0.92214 1.02453 1.21961 0.91088 0.99959 0.93510 1.21422 1.01094 0.90117 0.98652 1.21393 0.91684 1.01874 0.93037 1.19901 0.98335 0.89267 0.99776 1.68769 1.10200 1.30340 1.05978 1.24766 0.91030 0.99123 0.94338 1.24888 1.00869 0.89222 0.95756 1.68982 1.08944 1.33074 1.04775 1.19633 0.93651 0.93869 0.97217 1.20799 0.84396 0.95032 0.95107 1.44258 1.02041 1.65356 1.20035 1.19458 0.95394 1.35005 0.86147 0.90174 1.25726 0.98910 1.01375 0.99074 1.70164 1.26039 1.46277 1.15973 0.85545 0.78877 0.78054 0.80210 1.17718 1.22006 1.24205 0.90480 0.94828 0.92634 0.91480 0.88885 0.89528 0.90978 0.75639 0.81926 0.79111 0.81049 0.76131 0.78298 0.98766 0.94024 0.95089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.13 7.95 71.98 0.57 -3.56 16 2 C 0.15 5.62 3.50 44.97 0.16 5.78 16 3 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 4 C -0.12 -3.16 5.21 30.67 0.16 -3.00 16 5 C -0.11 -3.15 5.59 30.62 0.17 -2.98 16 6 C 0.13 5.10 2.81 45.07 0.13 5.23 16 7 H 0.06 2.53 7.58 -2.39 -0.02 2.51 16 8 N -0.69 -24.84 4.86 -445.36 -2.17 -27.01 16 9 C 0.54 22.83 7.73 86.69 0.67 23.50 16 10 O -0.56 -28.81 14.85 -4.02 -0.06 -28.87 16 11 C -0.13 -4.59 5.90 -19.87 -0.12 -4.70 16 12 C -0.04 -1.05 9.52 22.55 0.21 -0.84 16 13 C -0.09 -1.58 9.93 21.98 0.22 -1.36 16 14 C -0.06 -1.23 9.97 22.40 0.22 -1.01 16 15 C 0.05 1.45 6.59 40.28 0.27 1.72 16 16 N -0.44 -11.35 10.46 -188.15 -1.97 -13.31 16 17 C 0.08 1.77 11.21 85.11 0.95 2.72 16 18 C 0.07 1.83 11.22 85.09 0.95 2.79 16 19 N -0.44 -17.06 8.56 -187.42 -1.60 -18.67 16 20 C 0.08 2.91 6.60 40.58 0.27 3.18 16 21 C 0.17 8.80 4.88 86.36 0.42 9.22 16 22 N -0.59 -28.29 2.90 -675.24 -1.96 -30.25 16 23 C -0.23 -12.18 8.58 84.03 0.72 -11.46 16 24 H 0.08 4.01 6.23 -2.91 -0.02 3.99 16 25 C -0.06 -3.27 4.94 84.86 0.42 -2.85 16 26 N -0.94 -59.47 11.23 21.65 0.24 -59.23 16 27 Si 0.94 47.59 29.58 68.60 2.03 49.62 16 28 H -0.25 -11.61 7.11 99.48 0.71 -10.90 16 29 H -0.29 -14.72 7.11 99.48 0.71 -14.02 16 30 H -0.31 -16.84 7.11 99.48 0.71 -16.13 16 31 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 32 H 0.03 1.25 7.67 -2.39 -0.02 1.23 16 33 H 0.05 1.74 7.40 -2.39 -0.02 1.73 16 34 H 0.07 1.65 6.40 -2.39 -0.02 1.63 16 35 H 0.09 1.88 8.14 -2.38 -0.02 1.86 16 36 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 37 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 38 H 0.41 11.82 4.80 -92.71 -0.44 11.37 16 39 H 0.16 2.88 6.37 -2.91 -0.02 2.86 16 40 H 0.19 1.34 8.06 -2.91 -0.02 1.32 16 41 H 0.17 2.36 8.06 -2.91 -0.02 2.34 16 42 H 0.22 2.27 8.06 -2.91 -0.02 2.24 16 43 H 0.20 3.85 8.06 -2.91 -0.02 3.83 16 44 H -0.01 -0.31 8.14 -2.39 -0.02 -0.33 16 45 H 0.04 2.57 6.15 -2.39 -0.01 2.55 16 46 H 0.24 15.16 8.31 -92.71 -0.77 14.38 16 Total: -1.00 -88.00 367.87 1.49 -86.51 By element: Atomic # 1 Polarization: 18.25 SS G_CDS: 0.57 Total: 18.82 kcal Atomic # 6 Polarization: 15.98 SS G_CDS: 6.40 Total: 22.38 kcal Atomic # 7 Polarization: -141.01 SS G_CDS: -7.46 Total: -148.47 kcal Atomic # 8 Polarization: -28.81 SS G_CDS: -0.06 Total: -28.87 kcal Atomic # 14 Polarization: 47.59 SS G_CDS: 2.03 Total: 49.62 kcal Total: -88.00 1.49 -86.51 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071933961.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.472 kcal (2) G-P(sol) polarization free energy of solvation -87.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.513 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.84 seconds