Wall clock time and date at job start Sat Apr 11 2020 06:05:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09001 * 110.91443 * 2 1 4 4 C 1.54911 * 111.00856 * 236.10154 * 2 1 3 5 5 N 1.47420 * 104.83050 * 204.91473 * 4 2 1 6 6 C 1.36938 * 125.64717 * 204.09079 * 5 4 2 7 7 H 1.08000 * 120.00218 * 354.83006 * 6 5 4 8 8 C 1.38807 * 120.00351 * 174.83316 * 6 5 4 9 9 N 1.31623 * 119.99863 * 7.05252 * 8 6 5 10 10 Si 1.86801 * 120.00594 * 187.05334 * 8 6 5 11 11 H 1.48495 * 109.47052 * 94.98212 * 10 8 6 12 12 H 1.48495 * 109.47586 * 214.99037 * 10 8 6 13 13 H 1.48501 * 109.46812 * 334.98826 * 10 8 6 14 14 C 1.47016 * 108.70893 * 24.12932 * 5 4 2 15 15 C 1.54331 * 107.26844 * 358.93708 * 14 5 4 16 16 H 1.09002 * 110.72011 * 96.34748 * 15 14 5 17 17 N 1.46505 * 110.72224 * 219.44534 * 15 14 5 18 18 C 1.34773 * 119.99799 * 273.82606 * 17 15 14 19 19 O 1.21580 * 120.00485 * 359.71864 * 18 17 15 20 20 C 1.47658 * 119.99574 * 179.72734 * 18 17 15 21 21 C 1.39707 * 120.08242 * 359.71681 * 20 18 17 22 22 C 1.37722 * 119.91926 * 179.74510 * 21 20 18 23 23 C 1.39043 * 120.08187 * 0.53509 * 22 21 20 24 24 N 1.39862 * 119.92177 * 179.74382 * 23 22 21 25 25 C 1.37155 * 126.48324 * 359.97438 * 24 23 22 26 26 C 1.34632 * 106.83032 * 179.97438 * 25 24 23 27 27 N 1.34148 * 108.21056 * 359.97438 * 26 25 24 28 28 C 1.30492 * 109.37133 * 359.76583 * 27 26 25 29 29 C 1.39039 * 120.15707 * 359.72177 * 23 22 21 30 30 C 1.37726 * 120.08119 * 0.02562 * 29 23 22 31 31 H 1.08993 * 109.47539 * 296.09509 * 1 2 3 32 32 H 1.09004 * 109.47581 * 56.10287 * 1 2 3 33 33 H 1.09002 * 109.46870 * 176.09096 * 1 2 3 34 34 H 1.08999 * 110.36934 * 86.07536 * 4 2 1 35 35 H 1.08997 * 110.45728 * 323.79965 * 4 2 1 36 36 H 0.97001 * 120.00129 * 179.97438 * 9 8 6 37 37 H 1.08999 * 109.88255 * 239.52320 * 14 5 4 38 38 H 1.09001 * 110.01903 * 118.42801 * 14 5 4 39 39 H 0.97002 * 119.99478 * 93.54467 * 17 15 14 40 40 H 1.07997 * 120.03761 * 359.97438 * 21 20 18 41 41 H 1.08007 * 119.95906 * 180.23453 * 22 21 20 42 42 H 1.07999 * 126.58891 * 359.97438 * 25 24 23 43 43 H 1.07998 * 125.89326 * 179.97438 * 26 25 24 44 44 H 1.07996 * 125.72143 * 180.24026 * 28 27 26 45 45 H 1.08002 * 119.96126 * 179.97438 * 29 23 22 46 46 H 1.08005 * 120.04088 * 180.02562 * 30 29 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9190 1.0182 0.0000 4 6 2.0853 -0.8065 -1.2003 5 7 3.4271 -1.2429 -0.7733 6 6 4.4641 -1.5664 -1.6071 7 1 4.3097 -1.5928 -2.6757 8 6 5.7136 -1.8606 -1.0790 9 7 5.8694 -1.9649 0.2238 10 14 7.1741 -2.1083 -2.2170 11 1 7.9217 -0.8320 -2.3478 12 1 8.0691 -3.1509 -1.6541 13 1 6.6922 -2.5388 -3.5541 14 6 3.4675 -1.2741 0.6960 15 6 2.0861 -0.8079 1.2022 16 1 1.4478 -1.6632 1.4238 17 7 2.2285 0.0496 2.3816 18 6 2.3077 -0.5008 3.6092 19 8 2.2558 -1.7086 3.7385 20 6 2.4572 0.3631 4.7973 21 6 2.5228 1.7509 4.6502 22 6 2.6571 2.5538 5.7611 23 6 2.7385 1.9844 7.0269 24 7 2.8802 2.8027 8.1522 25 6 2.9531 4.1722 8.1607 26 6 3.0849 4.5477 9.4469 27 7 3.0924 3.4427 10.2075 28 6 2.9652 2.3914 9.4449 29 6 2.6790 0.6033 7.1767 30 6 2.5396 -0.2056 6.0707 31 1 -0.3634 0.4520 0.9228 32 1 -0.3634 0.5731 -0.8530 33 1 -0.3633 -1.0253 -0.0701 34 1 2.1560 -0.1719 -2.0837 35 1 1.4526 -1.6703 -1.4043 36 1 6.7425 -2.1708 0.5929 37 1 4.2426 -0.5997 1.0599 38 1 3.6663 -2.2883 1.0424 39 1 2.2699 1.0132 2.2783 40 1 2.4646 2.1937 3.6669 41 1 2.7040 3.6270 5.6484 42 1 2.9125 4.8244 7.3008 43 1 3.1700 5.5632 9.8045 44 1 2.9353 1.3665 9.7838 45 1 2.7430 0.1643 8.1614 46 1 2.4930 -1.2783 6.1879 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001080209746.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:55 Heat of formation + Delta-G solvation = 89.485578 kcal Electronic energy + Delta-G solvation = -28440.215551 eV Core-core repulsion = 24524.902255 eV Total energy + Delta-G solvation = -3915.313297 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.68284 -40.24668 -38.78915 -37.43524 -34.46065 -34.01959 -32.74956 -31.65950 -30.42392 -30.19795 -29.66454 -27.69382 -25.69280 -24.69459 -23.75429 -23.33872 -21.77797 -20.94617 -20.66112 -20.11911 -19.68223 -19.03958 -17.61323 -16.91114 -16.16279 -15.86753 -15.60294 -15.28980 -15.00536 -14.82769 -14.50175 -14.32977 -14.05842 -13.92175 -13.78890 -13.70741 -13.24958 -13.03107 -12.88695 -12.84141 -12.61529 -12.04900 -11.74799 -11.51524 -11.39402 -11.06178 -10.96556 -10.82024 -10.66673 -10.48147 -10.42895 -10.04021 -9.96481 -9.78052 -9.67875 -9.51902 -9.10786 -8.73208 -8.62103 -8.49900 -6.86303 -5.73023 -3.07352 0.19930 0.89597 1.76505 2.25409 2.73228 2.89045 3.31554 3.38807 3.43912 3.46448 3.68193 4.14187 4.22778 4.30073 4.47415 4.48572 4.62350 4.78491 4.87556 5.00356 5.02353 5.16361 5.24583 5.25401 5.38605 5.48654 5.50653 5.51850 5.69569 5.75007 5.91171 5.92506 5.98155 6.02771 6.09127 6.14234 6.22957 6.29762 6.33841 6.43353 6.58321 6.68024 6.83604 6.87359 7.48959 7.57199 7.59744 7.77873 7.82944 8.22550 8.43191 9.18584 9.79564 10.44472 11.37920 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.014728 B = 0.002367 C = 0.002200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1900.716120 B =11824.520775 C =12724.380071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.113 4.113 3 H 0.077 0.923 4 C 0.141 3.859 5 N -0.606 5.606 6 C -0.232 4.232 7 H 0.079 0.921 8 C -0.007 4.007 9 N -0.916 5.916 10 Si 0.910 3.090 11 H -0.289 1.289 12 H -0.291 1.291 13 H -0.280 1.280 14 C 0.172 3.828 15 C 0.120 3.880 16 H 0.089 0.911 17 N -0.706 5.706 18 C 0.555 3.445 19 O -0.530 6.530 20 C -0.128 4.128 21 C -0.059 4.059 22 C -0.139 4.139 23 C 0.149 3.851 24 N -0.411 5.411 25 C -0.052 4.052 26 C -0.023 4.023 27 N -0.486 5.486 28 C 0.191 3.809 29 C -0.141 4.141 30 C -0.032 4.032 31 H 0.050 0.950 32 H 0.054 0.946 33 H 0.056 0.944 34 H 0.043 0.957 35 H 0.022 0.978 36 H 0.252 0.748 37 H 0.052 0.948 38 H 0.047 0.953 39 H 0.394 0.606 40 H 0.138 0.862 41 H 0.136 0.864 42 H 0.179 0.821 43 H 0.175 0.825 44 H 0.210 0.790 45 H 0.138 0.862 46 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.482 12.313 13.353 20.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.133 4.133 3 H 0.096 0.904 4 C 0.014 3.986 5 N -0.333 5.333 6 C -0.360 4.360 7 H 0.097 0.903 8 C -0.203 4.203 9 N -0.563 5.563 10 Si 0.741 3.259 11 H -0.217 1.217 12 H -0.218 1.218 13 H -0.206 1.206 14 C 0.047 3.953 15 C 0.016 3.984 16 H 0.107 0.893 17 N -0.356 5.356 18 C 0.341 3.659 19 O -0.407 6.407 20 C -0.132 4.132 21 C -0.078 4.078 22 C -0.159 4.159 23 C 0.056 3.944 24 N -0.090 5.090 25 C -0.182 4.182 26 C -0.169 4.169 27 N -0.203 5.203 28 C -0.090 4.090 29 C -0.161 4.161 30 C -0.052 4.052 31 H 0.069 0.931 32 H 0.073 0.927 33 H 0.075 0.925 34 H 0.061 0.939 35 H 0.040 0.960 36 H 0.063 0.937 37 H 0.070 0.930 38 H 0.065 0.935 39 H 0.229 0.771 40 H 0.156 0.844 41 H 0.154 0.846 42 H 0.196 0.804 43 H 0.192 0.808 44 H 0.227 0.773 45 H 0.156 0.844 46 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -10.216 11.330 14.245 20.872 hybrid contribution 0.923 0.451 -1.480 1.802 sum -9.293 11.781 12.765 19.700 Atomic orbital electron populations 1.21707 0.94977 1.01890 1.00996 1.22610 0.94845 0.99492 0.96367 0.90444 1.21591 0.87644 0.95021 0.94316 1.44412 1.08100 1.79010 1.01740 1.19045 0.87340 1.40487 0.89122 0.90285 1.24850 0.97656 1.01808 0.96009 1.69988 1.22556 1.54266 1.09520 0.86123 0.82780 0.77378 0.79642 1.21655 1.21754 1.20594 1.21483 0.89964 1.00455 0.83436 1.22544 1.00475 0.92706 0.82690 0.89333 1.45856 1.73589 1.10151 1.05987 1.18027 0.77167 0.87738 0.82989 1.90808 1.49594 1.14178 1.86122 1.20219 1.04788 0.93562 0.94584 1.21217 0.95464 0.92345 0.98768 1.20749 1.04272 1.00682 0.90184 1.17991 1.00503 0.90220 0.85682 1.43237 1.52581 1.06504 1.06686 1.22832 1.11333 0.82959 1.01087 1.22392 1.06799 0.98370 0.89354 1.70341 1.18741 0.97972 1.33232 1.25357 1.04638 1.00652 0.78355 1.20790 1.04469 0.90503 1.00306 1.21186 0.92799 1.01182 0.89983 0.93115 0.92713 0.92518 0.93889 0.96021 0.93719 0.93020 0.93503 0.77111 0.84414 0.84616 0.80360 0.80780 0.77321 0.84427 0.83294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.71 9.31 37.15 0.35 -1.36 16 2 C -0.11 -1.78 3.25 -88.47 -0.29 -2.07 16 3 H 0.08 1.15 8.00 -51.93 -0.42 0.74 16 4 C 0.14 2.77 6.70 -2.53 -0.02 2.75 16 5 N -0.61 -15.22 3.39 -170.08 -0.58 -15.80 16 6 C -0.23 -6.41 10.27 -15.06 -0.15 -6.56 16 7 H 0.08 2.10 7.84 -52.49 -0.41 1.69 16 8 C -0.01 -0.18 5.48 -17.43 -0.10 -0.28 16 9 N -0.92 -27.18 10.36 55.49 0.57 -26.61 16 10 Si 0.91 22.07 29.56 -169.99 -5.02 17.05 16 11 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 12 H -0.29 -7.17 7.11 56.52 0.40 -6.76 16 13 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 14 C 0.17 4.18 5.13 -3.06 -0.02 4.16 16 15 C 0.12 2.20 2.70 -66.09 -0.18 2.02 16 16 H 0.09 1.72 7.60 -51.93 -0.39 1.32 16 17 N -0.71 -10.64 5.08 -53.02 -0.27 -10.91 16 18 C 0.55 8.88 7.76 -12.42 -0.10 8.78 16 19 O -0.53 -10.62 16.07 5.30 0.09 -10.54 16 20 C -0.13 -1.56 5.88 -104.95 -0.62 -2.18 16 21 C -0.06 -0.55 9.53 -39.22 -0.37 -0.93 16 22 C -0.14 -1.17 9.45 -39.47 -0.37 -1.54 16 23 C 0.15 1.36 6.64 -83.60 -0.55 0.81 16 24 N -0.41 -3.74 2.98 -62.06 -0.19 -3.93 16 25 C -0.05 -0.43 10.85 -16.45 -0.18 -0.61 16 26 C -0.02 -0.21 11.85 -17.82 -0.21 -0.42 16 27 N -0.49 -5.36 11.24 -14.46 -0.16 -5.52 16 28 C 0.19 1.76 11.91 -89.58 -1.07 0.69 16 29 C -0.14 -1.25 9.45 -39.47 -0.37 -1.62 16 30 C -0.03 -0.35 9.58 -39.22 -0.38 -0.73 16 31 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.06 0.72 8.08 -51.93 -0.42 0.30 16 34 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.02 0.43 7.99 -51.93 -0.41 0.01 16 36 H 0.25 7.32 8.31 -40.82 -0.34 6.98 16 37 H 0.05 1.38 7.18 -51.93 -0.37 1.01 16 38 H 0.05 1.33 7.61 -51.93 -0.40 0.94 16 39 H 0.39 4.66 6.54 -40.82 -0.27 4.40 16 40 H 0.14 1.01 6.39 -52.49 -0.34 0.68 16 41 H 0.14 0.82 6.79 -52.48 -0.36 0.46 16 42 H 0.18 0.92 7.13 -52.49 -0.37 0.54 16 43 H 0.18 1.12 8.06 -52.49 -0.42 0.70 16 44 H 0.21 1.23 7.05 -52.49 -0.37 0.86 16 45 H 0.14 0.86 6.75 -52.49 -0.35 0.51 16 46 H 0.15 1.64 7.64 -52.48 -0.40 1.24 16 LS Contribution 379.11 15.07 5.71 5.71 Total: -1.00 -35.50 379.11 -10.58 -46.07 By element: Atomic # 1 Polarization: 9.66 SS G_CDS: -6.11 Total: 3.55 kcal Atomic # 6 Polarization: 5.54 SS G_CDS: -4.62 Total: 0.92 kcal Atomic # 7 Polarization: -62.14 SS G_CDS: -0.62 Total: -62.76 kcal Atomic # 8 Polarization: -10.62 SS G_CDS: 0.09 Total: -10.54 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -35.50 -10.58 -46.07 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001080209746.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.559 kcal (2) G-P(sol) polarization free energy of solvation -35.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.074 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds