Wall clock time and date at job start Sat Apr 11 2020 06:05:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09001 * 110.91443 * 2 1 4 4 C 1.54911 * 111.00856 * 236.10154 * 2 1 3 5 5 N 1.47420 * 104.83050 * 204.91473 * 4 2 1 6 6 C 1.36938 * 125.64717 * 204.09079 * 5 4 2 7 7 H 1.08000 * 120.00218 * 354.83006 * 6 5 4 8 8 C 1.38807 * 120.00351 * 174.83316 * 6 5 4 9 9 N 1.31623 * 119.99863 * 7.05252 * 8 6 5 10 10 Si 1.86801 * 120.00594 * 187.05334 * 8 6 5 11 11 H 1.48495 * 109.47052 * 94.98212 * 10 8 6 12 12 H 1.48495 * 109.47586 * 214.99037 * 10 8 6 13 13 H 1.48501 * 109.46812 * 334.98826 * 10 8 6 14 14 C 1.47016 * 108.70893 * 24.12932 * 5 4 2 15 15 C 1.54331 * 107.26844 * 358.93708 * 14 5 4 16 16 H 1.09002 * 110.72011 * 96.34748 * 15 14 5 17 17 N 1.46505 * 110.72224 * 219.44534 * 15 14 5 18 18 C 1.34773 * 119.99799 * 273.82606 * 17 15 14 19 19 O 1.21580 * 120.00485 * 359.71864 * 18 17 15 20 20 C 1.47658 * 119.99574 * 179.72734 * 18 17 15 21 21 C 1.39707 * 120.08242 * 359.71681 * 20 18 17 22 22 C 1.37722 * 119.91926 * 179.74510 * 21 20 18 23 23 C 1.39043 * 120.08187 * 0.53509 * 22 21 20 24 24 N 1.39862 * 119.92177 * 179.74382 * 23 22 21 25 25 C 1.37155 * 126.48324 * 359.97438 * 24 23 22 26 26 C 1.34632 * 106.83032 * 179.97438 * 25 24 23 27 27 N 1.34148 * 108.21056 * 359.97438 * 26 25 24 28 28 C 1.30492 * 109.37133 * 359.76583 * 27 26 25 29 29 C 1.39039 * 120.15707 * 359.72177 * 23 22 21 30 30 C 1.37726 * 120.08119 * 0.02562 * 29 23 22 31 31 H 1.08993 * 109.47539 * 296.09509 * 1 2 3 32 32 H 1.09004 * 109.47581 * 56.10287 * 1 2 3 33 33 H 1.09002 * 109.46870 * 176.09096 * 1 2 3 34 34 H 1.08999 * 110.36934 * 86.07536 * 4 2 1 35 35 H 1.08997 * 110.45728 * 323.79965 * 4 2 1 36 36 H 0.97001 * 120.00129 * 179.97438 * 9 8 6 37 37 H 1.08999 * 109.88255 * 239.52320 * 14 5 4 38 38 H 1.09001 * 110.01903 * 118.42801 * 14 5 4 39 39 H 0.97002 * 119.99478 * 93.54467 * 17 15 14 40 40 H 1.07997 * 120.03761 * 359.97438 * 21 20 18 41 41 H 1.08007 * 119.95906 * 180.23453 * 22 21 20 42 42 H 1.07999 * 126.58891 * 359.97438 * 25 24 23 43 43 H 1.07998 * 125.89326 * 179.97438 * 26 25 24 44 44 H 1.07996 * 125.72143 * 180.24026 * 28 27 26 45 45 H 1.08002 * 119.96126 * 179.97438 * 29 23 22 46 46 H 1.08005 * 120.04088 * 180.02562 * 30 29 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9190 1.0182 0.0000 4 6 2.0853 -0.8065 -1.2003 5 7 3.4271 -1.2429 -0.7733 6 6 4.4641 -1.5664 -1.6071 7 1 4.3097 -1.5928 -2.6757 8 6 5.7136 -1.8606 -1.0790 9 7 5.8694 -1.9649 0.2238 10 14 7.1741 -2.1083 -2.2170 11 1 7.9217 -0.8320 -2.3478 12 1 8.0691 -3.1509 -1.6541 13 1 6.6922 -2.5388 -3.5541 14 6 3.4675 -1.2741 0.6960 15 6 2.0861 -0.8079 1.2022 16 1 1.4478 -1.6632 1.4238 17 7 2.2285 0.0496 2.3816 18 6 2.3077 -0.5008 3.6092 19 8 2.2558 -1.7086 3.7385 20 6 2.4572 0.3631 4.7973 21 6 2.5228 1.7509 4.6502 22 6 2.6571 2.5538 5.7611 23 6 2.7385 1.9844 7.0269 24 7 2.8802 2.8027 8.1522 25 6 2.9531 4.1722 8.1607 26 6 3.0849 4.5477 9.4469 27 7 3.0924 3.4427 10.2075 28 6 2.9652 2.3914 9.4449 29 6 2.6790 0.6033 7.1767 30 6 2.5396 -0.2056 6.0707 31 1 -0.3634 0.4520 0.9228 32 1 -0.3634 0.5731 -0.8530 33 1 -0.3633 -1.0253 -0.0701 34 1 2.1560 -0.1719 -2.0837 35 1 1.4526 -1.6703 -1.4043 36 1 6.7425 -2.1708 0.5929 37 1 4.2426 -0.5997 1.0599 38 1 3.6663 -2.2883 1.0424 39 1 2.2699 1.0132 2.2783 40 1 2.4646 2.1937 3.6669 41 1 2.7040 3.6270 5.6484 42 1 2.9125 4.8244 7.3008 43 1 3.1700 5.5632 9.8045 44 1 2.9353 1.3665 9.7838 45 1 2.7430 0.1643 8.1614 46 1 2.4930 -1.2783 6.1879 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001080209746.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:54 Heat of formation + Delta-G solvation = 67.779429 kcal Electronic energy + Delta-G solvation = -28441.156801 eV Core-core repulsion = 24524.902255 eV Total energy + Delta-G solvation = -3916.254546 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.33764 -41.37474 -39.89978 -38.87403 -35.72485 -35.20588 -34.30690 -32.44542 -32.16637 -31.04504 -30.40121 -29.24738 -27.37703 -25.83709 -24.93856 -24.25578 -22.84216 -21.96669 -21.70526 -21.44716 -20.98442 -19.73847 -18.90574 -18.67462 -17.52267 -16.92694 -16.54578 -16.44362 -16.02096 -15.92833 -15.84402 -15.54602 -15.04019 -14.96710 -14.70481 -14.66438 -14.41278 -14.32384 -14.06830 -13.93254 -13.66527 -13.57545 -13.34337 -13.04393 -12.86815 -12.60725 -12.23245 -12.18880 -12.05211 -11.88013 -11.73910 -11.65868 -11.45411 -11.19290 -11.03621 -10.74107 -10.23102 -10.09791 -9.75774 -9.35424 -8.93012 -7.86806 -5.23611 -0.60114 0.18413 1.03370 1.44024 1.45908 1.55237 1.59569 1.85984 2.08818 2.11495 2.48486 2.74749 3.31233 3.46815 3.50386 3.62001 3.68704 3.73343 3.79615 3.88734 4.04668 4.08121 4.09980 4.14544 4.44596 4.48838 4.49803 4.59457 4.61803 4.72600 4.81992 4.84232 4.89315 4.99929 5.06979 5.08576 5.18273 5.21819 5.29700 5.34532 5.43762 5.48252 5.50788 5.61735 5.71994 5.77720 6.15853 6.18414 6.53839 6.95293 7.05212 7.21497 7.74870 8.38755 9.22658 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.014728 B = 0.002367 C = 0.002200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1900.716120 B =11824.520775 C =12724.380071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.092 4.092 3 H 0.095 0.905 4 C 0.131 3.869 5 N -0.628 5.628 6 C -0.241 4.241 7 H 0.088 0.912 8 C -0.069 4.069 9 N -0.951 5.951 10 Si 0.979 3.021 11 H -0.284 1.284 12 H -0.300 1.300 13 H -0.265 1.265 14 C 0.187 3.813 15 C 0.136 3.864 16 H 0.074 0.926 17 N -0.694 5.694 18 C 0.551 3.449 19 O -0.582 6.582 20 C -0.151 4.151 21 C -0.050 4.050 22 C -0.133 4.133 23 C 0.152 3.848 24 N -0.416 5.416 25 C -0.050 4.050 26 C -0.043 4.043 27 N -0.521 5.521 28 C 0.182 3.818 29 C -0.137 4.137 30 C -0.043 4.043 31 H 0.070 0.930 32 H 0.079 0.921 33 H 0.050 0.950 34 H 0.057 0.943 35 H 0.024 0.976 36 H 0.244 0.756 37 H 0.019 0.981 38 H -0.014 1.014 39 H 0.413 0.587 40 H 0.161 0.839 41 H 0.168 0.832 42 H 0.210 0.790 43 H 0.193 0.807 44 H 0.233 0.767 45 H 0.162 0.838 46 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.731 15.381 12.878 23.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.112 4.112 3 H 0.114 0.886 4 C 0.006 3.994 5 N -0.355 5.355 6 C -0.370 4.370 7 H 0.106 0.894 8 C -0.262 4.262 9 N -0.600 5.600 10 Si 0.807 3.193 11 H -0.211 1.211 12 H -0.227 1.227 13 H -0.189 1.189 14 C 0.061 3.939 15 C 0.030 3.970 16 H 0.092 0.908 17 N -0.345 5.345 18 C 0.340 3.660 19 O -0.463 6.463 20 C -0.155 4.155 21 C -0.069 4.069 22 C -0.152 4.152 23 C 0.058 3.942 24 N -0.095 5.095 25 C -0.179 4.179 26 C -0.188 4.188 27 N -0.238 5.238 28 C -0.099 4.099 29 C -0.157 4.157 30 C -0.063 4.063 31 H 0.089 0.911 32 H 0.097 0.903 33 H 0.069 0.931 34 H 0.075 0.925 35 H 0.042 0.958 36 H 0.053 0.947 37 H 0.038 0.962 38 H 0.004 0.996 39 H 0.251 0.749 40 H 0.178 0.822 41 H 0.185 0.815 42 H 0.227 0.773 43 H 0.210 0.790 44 H 0.249 0.751 45 H 0.179 0.821 46 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -11.509 14.466 13.749 23.038 hybrid contribution 1.295 -0.490 -1.272 1.880 sum -10.213 13.976 12.477 21.338 Atomic orbital electron populations 1.21664 0.91595 1.02304 1.03165 1.22535 0.97332 0.98976 0.92321 0.88639 1.21877 0.85148 0.95817 0.96545 1.44743 1.09761 1.79002 1.01949 1.19502 0.88243 1.39293 0.89978 0.89413 1.25736 1.00563 1.02476 0.97426 1.70253 1.22376 1.55917 1.11433 0.85048 0.79047 0.76977 0.78222 1.21087 1.22684 1.18904 1.21118 0.92784 0.96456 0.83556 1.22087 0.96468 0.93638 0.84805 0.90794 1.45646 1.73213 1.10776 1.04910 1.18698 0.75637 0.87589 0.84100 1.90776 1.51965 1.16666 1.86918 1.19982 1.08003 0.94415 0.93082 1.21402 0.94305 0.90890 1.00352 1.21061 1.02807 1.02123 0.89249 1.18156 0.99568 0.90291 0.86154 1.43334 1.52715 1.06947 1.06527 1.23366 1.09921 0.82787 1.01829 1.22835 1.07176 0.98892 0.89877 1.70327 1.19903 0.99116 1.34499 1.25890 1.04082 1.01467 0.78426 1.20952 1.03508 0.90568 1.00630 1.21177 0.93579 1.01063 0.90447 0.91144 0.90256 0.93123 0.92489 0.95770 0.94686 0.96232 0.99565 0.74877 0.82178 0.81501 0.77290 0.79038 0.75062 0.82072 0.84487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.77 9.31 71.98 0.67 -2.10 16 2 C -0.09 -2.72 3.25 -9.40 -0.03 -2.75 16 3 H 0.10 2.52 8.00 -2.39 -0.02 2.50 16 4 C 0.13 5.03 6.70 86.86 0.58 5.61 16 5 N -0.63 -32.29 3.39 -692.01 -2.35 -34.64 16 6 C -0.24 -13.57 10.27 84.03 0.86 -12.71 16 7 H 0.09 4.65 7.84 -2.91 -0.02 4.63 16 8 C -0.07 -4.01 5.48 84.86 0.46 -3.55 16 9 N -0.95 -59.33 10.36 21.65 0.22 -59.10 16 10 Si 0.98 46.31 29.56 68.60 2.03 48.34 16 11 H -0.28 -13.09 7.11 99.48 0.71 -12.39 16 12 H -0.30 -14.49 7.11 99.48 0.71 -13.78 16 13 H -0.26 -11.69 7.11 99.48 0.71 -10.98 16 14 C 0.19 9.59 5.13 86.73 0.44 10.04 16 15 C 0.14 5.05 2.70 46.18 0.12 5.18 16 16 H 0.07 2.99 7.60 -2.39 -0.02 2.97 16 17 N -0.69 -20.84 5.08 -439.94 -2.24 -23.07 16 18 C 0.55 18.21 7.76 86.73 0.67 18.88 16 19 O -0.58 -24.99 16.07 -3.97 -0.06 -25.05 16 20 C -0.15 -3.64 5.88 -20.08 -0.12 -3.76 16 21 C -0.05 -0.82 9.53 22.50 0.21 -0.61 16 22 C -0.13 -1.77 9.45 22.34 0.21 -1.56 16 23 C 0.15 2.37 6.64 38.25 0.25 2.62 16 24 N -0.42 -6.46 2.98 -350.26 -1.04 -7.50 16 25 C -0.05 -0.66 10.85 83.03 0.90 0.24 16 26 C -0.04 -0.70 11.85 83.51 0.99 0.29 16 27 N -0.52 -10.78 11.24 -199.67 -2.24 -13.03 16 28 C 0.18 3.02 11.91 179.99 2.14 5.16 16 29 C -0.14 -2.23 9.45 22.34 0.21 -2.02 16 30 C -0.04 -0.95 9.58 22.50 0.22 -0.73 16 31 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 32 H 0.08 1.37 8.14 -2.38 -0.02 1.35 16 33 H 0.05 1.16 8.08 -2.39 -0.02 1.14 16 34 H 0.06 2.03 8.14 -2.39 -0.02 2.02 16 35 H 0.02 0.93 7.99 -2.39 -0.02 0.91 16 36 H 0.24 14.91 8.31 -92.71 -0.77 14.14 16 37 H 0.02 1.11 7.18 -2.39 -0.02 1.09 16 38 H -0.01 -0.87 7.61 -2.39 -0.02 -0.88 16 39 H 0.41 9.00 6.54 -92.71 -0.61 8.40 16 40 H 0.16 1.80 6.39 -2.91 -0.02 1.78 16 41 H 0.17 1.17 6.79 -2.91 -0.02 1.15 16 42 H 0.21 1.22 7.13 -2.91 -0.02 1.20 16 43 H 0.19 2.10 8.06 -2.91 -0.02 2.08 16 44 H 0.23 2.28 7.05 -2.91 -0.02 2.26 16 45 H 0.16 1.73 6.75 -2.91 -0.02 1.71 16 46 H 0.14 3.27 7.64 -2.91 -0.02 3.24 16 Total: -1.00 -83.55 379.11 3.53 -80.02 By element: Atomic # 1 Polarization: 15.39 SS G_CDS: 0.41 Total: 15.80 kcal Atomic # 6 Polarization: 9.43 SS G_CDS: 8.81 Total: 18.24 kcal Atomic # 7 Polarization: -129.70 SS G_CDS: -7.65 Total: -137.35 kcal Atomic # 8 Polarization: -24.99 SS G_CDS: -0.06 Total: -25.05 kcal Atomic # 14 Polarization: 46.31 SS G_CDS: 2.03 Total: 48.34 kcal Total: -83.55 3.53 -80.02 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001080209746.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.799 kcal (2) G-P(sol) polarization free energy of solvation -83.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.020 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds