Wall clock time and date at job start Sat Apr 11 2020 06:06:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 110.63766 * 2 1 4 4 C 1.54316 * 110.72044 * 236.66216 * 2 1 3 5 5 N 1.47021 * 107.27437 * 219.44052 * 4 2 1 6 6 C 1.36940 * 125.65363 * 178.90638 * 5 4 2 7 7 H 1.07997 * 119.99438 * 0.02562 * 6 5 4 8 8 C 1.38812 * 120.00268 * 180.02562 * 6 5 4 9 9 N 1.31617 * 119.99661 * 0.02562 * 8 6 5 10 10 Si 1.86794 * 119.99963 * 180.02562 * 8 6 5 11 11 H 1.48496 * 109.47261 * 60.00204 * 10 8 6 12 12 H 1.48496 * 109.46897 * 179.97438 * 10 8 6 13 13 H 1.48497 * 109.47113 * 300.00118 * 10 8 6 14 14 C 1.47475 * 108.72058 * 358.98178 * 5 4 2 15 15 C 1.54913 * 104.80796 * 24.06222 * 14 5 4 16 16 H 1.08996 * 110.99865 * 81.14430 * 15 14 5 17 17 N 1.46503 * 111.00014 * 204.94961 * 15 14 5 18 18 C 1.34774 * 120.00007 * 270.42189 * 17 15 14 19 19 O 1.21508 * 120.00613 * 0.02562 * 18 17 15 20 20 C 1.48189 * 119.99887 * 180.02562 * 18 17 15 21 21 C 1.39112 * 119.69172 * 179.97438 * 20 18 17 22 22 C 1.39295 * 118.97200 * 179.69883 * 21 20 18 23 23 N 1.39916 * 120.82143 * 180.25472 * 22 21 20 24 24 C 1.36621 * 125.67740 * 359.69649 * 23 22 21 25 25 C 1.34812 * 108.19767 * 179.83018 * 24 23 22 26 26 C 1.40981 * 107.47741 * 0.42124 * 25 24 23 27 27 C 1.34813 * 107.47926 * 359.73899 * 26 25 24 28 28 C 1.39285 * 118.35514 * 0.27807 * 22 21 20 29 29 C 1.38328 * 119.27511 * 0.02562 * 28 22 21 30 30 N 1.31597 * 120.97926 * 359.97438 * 29 28 22 31 31 H 1.09000 * 109.47474 * 296.86085 * 1 2 3 32 32 H 1.09005 * 109.47179 * 56.86017 * 1 2 3 33 33 H 1.08999 * 109.46890 * 176.85831 * 1 2 3 34 34 H 1.08996 * 109.88735 * 338.86311 * 4 2 1 35 35 H 1.09007 * 109.88242 * 100.02501 * 4 2 1 36 36 H 0.97009 * 119.99849 * 179.97438 * 9 8 6 37 37 H 1.09003 * 110.34332 * 265.25368 * 14 5 4 38 38 H 1.08998 * 110.40594 * 142.91257 * 14 5 4 39 39 H 0.96996 * 119.99609 * 90.42717 * 17 15 14 40 40 H 1.08002 * 120.51779 * 359.97438 * 21 20 18 41 41 H 1.08007 * 125.90093 * 359.97438 * 24 23 22 42 42 H 1.07992 * 126.26289 * 180.12263 * 25 24 23 43 43 H 1.07995 * 126.26058 * 179.69420 * 26 25 24 44 44 H 1.08003 * 125.89676 * 179.97438 * 27 26 25 45 45 H 1.08001 * 120.36010 * 179.97438 * 28 22 21 46 46 H 1.08006 * 119.50396 * 180.02562 * 29 28 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9142 1.0200 0.0000 4 6 2.0760 -0.7932 -1.2058 5 7 3.2445 -1.5519 -0.7364 6 6 4.0036 -2.4005 -1.4973 7 1 3.7601 -2.5565 -2.5378 8 6 5.0859 -3.0601 -0.9313 9 7 5.3822 -2.8703 0.3370 10 14 6.1216 -4.2171 -1.9695 11 1 6.7134 -3.4666 -3.1061 12 1 7.2087 -4.7907 -1.1363 13 1 5.2666 -5.3131 -2.4917 14 6 3.4632 -1.2495 0.6904 15 6 2.0789 -0.7933 1.2151 16 1 1.4448 -1.6507 1.4407 17 7 2.2214 0.0737 2.3874 18 6 2.2516 -0.4634 3.6231 19 8 2.1610 -1.6668 3.7650 20 6 2.3952 0.4137 4.8089 21 6 2.4250 -0.1475 6.0815 22 6 2.5669 0.6904 7.1852 23 7 2.6069 0.1669 8.4821 24 6 2.5112 -1.1557 8.8109 25 6 2.5950 -1.2632 10.1521 26 6 2.7382 0.0389 10.6732 27 6 2.7424 0.8939 9.6309 28 6 2.6674 2.0622 6.9658 29 6 2.6230 2.5450 5.6703 30 7 2.4881 1.7283 4.6473 31 1 -0.3634 0.4643 0.9168 32 1 -0.3634 0.5618 -0.8605 33 1 -0.3633 -1.0261 -0.0563 34 1 1.3130 -1.4785 -1.5750 35 1 2.3741 -0.1058 -1.9975 36 1 6.1384 -3.3316 0.7327 37 1 4.1935 -0.4477 0.8002 38 1 3.7952 -2.1415 1.2214 39 1 2.2940 1.0343 2.2741 40 1 2.3440 -1.2166 6.2115 41 1 2.3916 -1.9739 8.1162 42 1 2.5546 -2.1789 10.7233 43 1 2.8273 0.3032 11.7165 44 1 2.8363 1.9681 9.6934 45 1 2.7779 2.7414 7.7981 46 1 2.7010 3.6080 5.4959 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001080741671.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:21 Heat of formation + Delta-G solvation = 90.434095 kcal Electronic energy + Delta-G solvation = -28615.805041 eV Core-core repulsion = 24700.532875 eV Total energy + Delta-G solvation = -3915.272166 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.05887 -40.44021 -39.03317 -37.44154 -34.51987 -33.84680 -32.63921 -31.86631 -30.34505 -30.02762 -29.29222 -27.85127 -25.67700 -24.91565 -24.06614 -23.40525 -21.62259 -20.56880 -20.31895 -20.04562 -19.66804 -18.78124 -17.12877 -16.94216 -16.33870 -16.18147 -15.63240 -15.53667 -14.94683 -14.86707 -14.64487 -14.38165 -14.00741 -13.84769 -13.72098 -13.45642 -12.99294 -12.88215 -12.66953 -12.48860 -12.43176 -12.28772 -12.16234 -11.70094 -11.21656 -11.07882 -10.84956 -10.76125 -10.64889 -10.39636 -10.28657 -9.97758 -9.77851 -9.73806 -9.63663 -9.59391 -8.70069 -8.62699 -8.60803 -8.46673 -6.81788 -5.60795 -3.04525 0.27376 0.56076 2.06803 2.33475 2.67219 2.84638 3.25312 3.43455 3.47167 3.49192 3.72904 3.96606 4.23552 4.29104 4.52076 4.60302 4.63548 4.85988 5.02033 5.03985 5.13960 5.19476 5.32892 5.35207 5.39188 5.46142 5.48905 5.55800 5.76768 5.89532 5.92956 5.97487 6.04154 6.09273 6.17469 6.24033 6.39126 6.49295 6.54661 6.68155 6.77241 6.79186 6.95608 6.99031 7.36384 7.50988 7.63792 7.84777 7.94208 8.38717 8.46942 9.23710 9.85177 10.48431 11.42033 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.013796 B = 0.002581 C = 0.002307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2029.098983 B =10846.428382 C =12134.261514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.111 4.111 3 H 0.075 0.925 4 C 0.142 3.858 5 N -0.603 5.603 6 C -0.226 4.226 7 H 0.079 0.921 8 C -0.010 4.010 9 N -0.918 5.918 10 Si 0.915 3.085 11 H -0.286 1.286 12 H -0.290 1.290 13 H -0.284 1.284 14 C 0.150 3.850 15 C 0.116 3.884 16 H 0.093 0.907 17 N -0.687 5.687 18 C 0.565 3.435 19 O -0.523 6.523 20 C 0.123 3.877 21 C -0.138 4.138 22 C 0.181 3.819 23 N -0.400 5.400 24 C -0.008 4.008 25 C -0.187 4.187 26 C -0.185 4.185 27 C -0.017 4.017 28 C -0.183 4.183 29 C 0.130 3.870 30 N -0.468 5.468 31 H 0.050 0.950 32 H 0.053 0.947 33 H 0.056 0.944 34 H 0.028 0.972 35 H 0.024 0.976 36 H 0.253 0.747 37 H 0.014 0.986 38 H 0.112 0.888 39 H 0.406 0.594 40 H 0.156 0.844 41 H 0.171 0.829 42 H 0.144 0.856 43 H 0.143 0.857 44 H 0.167 0.833 45 H 0.145 0.855 46 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.594 12.686 17.525 23.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.130 4.130 3 H 0.094 0.906 4 C 0.015 3.985 5 N -0.329 5.329 6 C -0.355 4.355 7 H 0.096 0.904 8 C -0.206 4.206 9 N -0.566 5.566 10 Si 0.746 3.254 11 H -0.212 1.212 12 H -0.216 1.216 13 H -0.211 1.211 14 C 0.024 3.976 15 C 0.011 3.989 16 H 0.111 0.889 17 N -0.337 5.337 18 C 0.348 3.652 19 O -0.399 6.399 20 C -0.015 4.015 21 C -0.161 4.161 22 C 0.080 3.920 23 N -0.073 5.073 24 C -0.134 4.134 25 C -0.211 4.211 26 C -0.209 4.209 27 C -0.142 4.142 28 C -0.205 4.205 29 C -0.030 4.030 30 N -0.181 5.181 31 H 0.069 0.931 32 H 0.072 0.928 33 H 0.075 0.925 34 H 0.046 0.954 35 H 0.042 0.958 36 H 0.064 0.936 37 H 0.032 0.968 38 H 0.130 0.870 39 H 0.241 0.759 40 H 0.174 0.826 41 H 0.188 0.812 42 H 0.162 0.838 43 H 0.161 0.839 44 H 0.184 0.816 45 H 0.163 0.837 46 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -8.509 12.066 16.485 22.130 hybrid contribution 0.754 -0.282 0.409 0.902 sum -7.755 11.784 16.894 22.009 Atomic orbital electron populations 1.21748 0.94923 1.01889 1.00954 1.22426 0.95272 0.99270 0.96063 0.90639 1.21341 0.90260 0.93163 0.93703 1.44396 1.30926 1.50421 1.07201 1.19016 1.06337 1.17160 0.92951 0.90362 1.24823 0.98785 1.00567 0.96406 1.69792 1.29998 1.45977 1.10860 0.86142 0.79751 0.80633 0.78893 1.21236 1.21587 1.21102 1.22243 0.89145 1.01157 0.85104 1.22813 1.01360 0.92320 0.82358 0.88875 1.45706 1.71568 1.11267 1.05134 1.17669 0.78000 0.86862 0.82648 1.90829 1.49632 1.13744 1.85669 1.21232 0.96874 0.90251 0.93183 1.21788 1.01477 1.02169 0.90635 1.18031 0.97329 0.93090 0.83524 1.41591 1.55050 1.07278 1.03409 1.22127 1.09060 0.84935 0.97278 1.21071 1.08600 0.98229 0.93200 1.21056 1.08513 0.92842 0.98486 1.21932 1.10370 0.98035 0.83866 1.22002 1.05046 0.93315 1.00175 1.22698 0.93441 1.00179 0.86660 1.67642 1.11633 1.03381 1.35426 0.93087 0.92803 0.92456 0.95410 0.95795 0.93625 0.96775 0.86995 0.75890 0.82623 0.81211 0.83806 0.83918 0.81584 0.83707 0.81133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.91 9.16 37.16 0.34 -1.57 16 2 C -0.11 -1.89 3.19 -88.79 -0.28 -2.17 16 3 H 0.08 1.19 7.99 -51.93 -0.42 0.77 16 4 C 0.14 2.94 6.84 -3.07 -0.02 2.92 16 5 N -0.60 -15.72 3.40 -170.03 -0.58 -16.29 16 6 C -0.23 -6.41 10.27 -15.06 -0.15 -6.57 16 7 H 0.08 2.12 7.83 -52.49 -0.41 1.71 16 8 C -0.01 -0.29 5.49 -17.43 -0.10 -0.38 16 9 N -0.92 -27.67 10.09 55.49 0.56 -27.11 16 10 Si 0.92 22.51 29.55 -169.99 -5.02 17.49 16 11 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 12 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 13 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 14 C 0.15 3.75 5.58 -2.50 -0.01 3.74 16 15 C 0.12 2.30 2.81 -65.78 -0.19 2.11 16 16 H 0.09 1.99 7.54 -51.93 -0.39 1.60 16 17 N -0.69 -11.68 5.20 -52.56 -0.27 -11.95 16 18 C 0.57 10.01 7.81 -12.17 -0.10 9.92 16 19 O -0.52 -11.05 16.01 5.36 0.09 -10.96 16 20 C 0.12 1.77 6.75 -83.04 -0.56 1.21 16 21 C -0.14 -1.79 9.04 -38.86 -0.35 -2.14 16 22 C 0.18 1.98 6.65 -83.39 -0.55 1.42 16 23 N -0.40 -4.19 2.97 -60.74 -0.18 -4.37 16 24 C -0.01 -0.09 10.77 -16.63 -0.18 -0.27 16 25 C -0.19 -1.77 10.86 -39.76 -0.43 -2.20 16 26 C -0.18 -1.61 10.86 -39.76 -0.43 -2.04 16 27 C -0.02 -0.15 10.77 -16.63 -0.18 -0.32 16 28 C -0.18 -1.55 9.53 -39.16 -0.37 -1.92 16 29 C 0.13 1.15 11.17 -17.62 -0.20 0.95 16 30 N -0.47 -5.76 9.54 -9.87 -0.09 -5.86 16 31 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.06 0.83 8.06 -51.93 -0.42 0.41 16 34 H 0.03 0.57 7.76 -51.93 -0.40 0.17 16 35 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.25 7.45 8.31 -40.82 -0.34 7.11 16 37 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 38 H 0.11 3.29 5.88 -51.93 -0.31 2.99 16 39 H 0.41 5.98 7.86 -40.82 -0.32 5.66 16 40 H 0.16 2.03 6.42 -52.49 -0.34 1.70 16 41 H 0.17 1.57 7.09 -52.48 -0.37 1.20 16 42 H 0.14 1.09 8.06 -52.49 -0.42 0.66 16 43 H 0.14 0.92 8.06 -52.49 -0.42 0.50 16 44 H 0.17 0.93 7.08 -52.48 -0.37 0.56 16 45 H 0.15 0.77 6.83 -52.49 -0.36 0.41 16 46 H 0.17 0.89 8.06 -52.48 -0.42 0.46 16 LS Contribution 381.02 15.07 5.74 5.74 Total: -1.00 -34.28 381.02 -9.73 -44.00 By element: Atomic # 1 Polarization: 12.82 SS G_CDS: -6.20 Total: 6.62 kcal Atomic # 6 Polarization: 6.46 SS G_CDS: -3.77 Total: 2.69 kcal Atomic # 7 Polarization: -65.02 SS G_CDS: -0.57 Total: -65.59 kcal Atomic # 8 Polarization: -11.05 SS G_CDS: 0.09 Total: -10.96 kcal Atomic # 14 Polarization: 22.51 SS G_CDS: -5.02 Total: 17.49 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -34.28 -9.73 -44.00 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001080741671.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.436 kcal (2) G-P(sol) polarization free energy of solvation -34.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.002 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds