Wall clock time and date at job start Sat Apr 11 2020 06:06:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 110.63766 * 2 1 4 4 C 1.54316 * 110.72044 * 236.66216 * 2 1 3 5 5 N 1.47021 * 107.27437 * 219.44052 * 4 2 1 6 6 C 1.36940 * 125.65363 * 178.90638 * 5 4 2 7 7 H 1.07997 * 119.99438 * 0.02562 * 6 5 4 8 8 C 1.38812 * 120.00268 * 180.02562 * 6 5 4 9 9 N 1.31617 * 119.99661 * 0.02562 * 8 6 5 10 10 Si 1.86794 * 119.99963 * 180.02562 * 8 6 5 11 11 H 1.48496 * 109.47261 * 60.00204 * 10 8 6 12 12 H 1.48496 * 109.46897 * 179.97438 * 10 8 6 13 13 H 1.48497 * 109.47113 * 300.00118 * 10 8 6 14 14 C 1.47475 * 108.72058 * 358.98178 * 5 4 2 15 15 C 1.54913 * 104.80796 * 24.06222 * 14 5 4 16 16 H 1.08996 * 110.99865 * 81.14430 * 15 14 5 17 17 N 1.46503 * 111.00014 * 204.94961 * 15 14 5 18 18 C 1.34774 * 120.00007 * 270.42189 * 17 15 14 19 19 O 1.21508 * 120.00613 * 0.02562 * 18 17 15 20 20 C 1.48189 * 119.99887 * 180.02562 * 18 17 15 21 21 C 1.39112 * 119.69172 * 179.97438 * 20 18 17 22 22 C 1.39295 * 118.97200 * 179.69883 * 21 20 18 23 23 N 1.39916 * 120.82143 * 180.25472 * 22 21 20 24 24 C 1.36621 * 125.67740 * 359.69649 * 23 22 21 25 25 C 1.34812 * 108.19767 * 179.83018 * 24 23 22 26 26 C 1.40981 * 107.47741 * 0.42124 * 25 24 23 27 27 C 1.34813 * 107.47926 * 359.73899 * 26 25 24 28 28 C 1.39285 * 118.35514 * 0.27807 * 22 21 20 29 29 C 1.38328 * 119.27511 * 0.02562 * 28 22 21 30 30 N 1.31597 * 120.97926 * 359.97438 * 29 28 22 31 31 H 1.09000 * 109.47474 * 296.86085 * 1 2 3 32 32 H 1.09005 * 109.47179 * 56.86017 * 1 2 3 33 33 H 1.08999 * 109.46890 * 176.85831 * 1 2 3 34 34 H 1.08996 * 109.88735 * 338.86311 * 4 2 1 35 35 H 1.09007 * 109.88242 * 100.02501 * 4 2 1 36 36 H 0.97009 * 119.99849 * 179.97438 * 9 8 6 37 37 H 1.09003 * 110.34332 * 265.25368 * 14 5 4 38 38 H 1.08998 * 110.40594 * 142.91257 * 14 5 4 39 39 H 0.96996 * 119.99609 * 90.42717 * 17 15 14 40 40 H 1.08002 * 120.51779 * 359.97438 * 21 20 18 41 41 H 1.08007 * 125.90093 * 359.97438 * 24 23 22 42 42 H 1.07992 * 126.26289 * 180.12263 * 25 24 23 43 43 H 1.07995 * 126.26058 * 179.69420 * 26 25 24 44 44 H 1.08003 * 125.89676 * 179.97438 * 27 26 25 45 45 H 1.08001 * 120.36010 * 179.97438 * 28 22 21 46 46 H 1.08006 * 119.50396 * 180.02562 * 29 28 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9142 1.0200 0.0000 4 6 2.0760 -0.7932 -1.2058 5 7 3.2445 -1.5519 -0.7364 6 6 4.0036 -2.4005 -1.4973 7 1 3.7601 -2.5565 -2.5378 8 6 5.0859 -3.0601 -0.9313 9 7 5.3822 -2.8703 0.3370 10 14 6.1216 -4.2171 -1.9695 11 1 6.7134 -3.4666 -3.1061 12 1 7.2087 -4.7907 -1.1363 13 1 5.2666 -5.3131 -2.4917 14 6 3.4632 -1.2495 0.6904 15 6 2.0789 -0.7933 1.2151 16 1 1.4448 -1.6507 1.4407 17 7 2.2214 0.0737 2.3874 18 6 2.2516 -0.4634 3.6231 19 8 2.1610 -1.6668 3.7650 20 6 2.3952 0.4137 4.8089 21 6 2.4250 -0.1475 6.0815 22 6 2.5669 0.6904 7.1852 23 7 2.6069 0.1669 8.4821 24 6 2.5112 -1.1557 8.8109 25 6 2.5950 -1.2632 10.1521 26 6 2.7382 0.0389 10.6732 27 6 2.7424 0.8939 9.6309 28 6 2.6674 2.0622 6.9658 29 6 2.6230 2.5450 5.6703 30 7 2.4881 1.7283 4.6473 31 1 -0.3634 0.4643 0.9168 32 1 -0.3634 0.5618 -0.8605 33 1 -0.3633 -1.0261 -0.0563 34 1 1.3130 -1.4785 -1.5750 35 1 2.3741 -0.1058 -1.9975 36 1 6.1384 -3.3316 0.7327 37 1 4.1935 -0.4477 0.8002 38 1 3.7952 -2.1415 1.2214 39 1 2.2940 1.0343 2.2741 40 1 2.3440 -1.2166 6.2115 41 1 2.3916 -1.9739 8.1162 42 1 2.5546 -2.1789 10.7233 43 1 2.8273 0.3032 11.7165 44 1 2.8363 1.9681 9.6934 45 1 2.7779 2.7414 7.7981 46 1 2.7010 3.6080 5.4959 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001080741671.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:20 Heat of formation + Delta-G solvation = 68.482377 kcal Electronic energy + Delta-G solvation = -28616.756939 eV Core-core repulsion = 24700.532875 eV Total energy + Delta-G solvation = -3916.224064 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.80805 -41.51414 -40.32451 -39.05531 -35.79112 -35.19190 -34.27995 -32.80143 -32.17348 -30.82635 -30.06155 -29.50661 -27.44789 -26.16064 -25.04280 -24.76506 -22.84808 -21.85312 -21.55701 -21.25195 -20.79716 -19.78450 -18.94426 -18.20674 -17.63629 -17.05739 -16.96765 -16.67082 -16.47803 -15.92199 -15.90090 -15.61252 -15.31447 -14.95256 -14.59286 -14.55518 -14.43296 -14.42999 -14.17947 -13.90188 -13.39728 -13.31922 -13.09952 -13.07225 -13.02470 -12.82825 -12.60006 -12.27768 -12.09059 -11.84931 -11.70044 -11.64270 -11.47646 -11.41957 -10.82042 -10.77660 -10.50524 -10.04978 -9.44926 -9.30404 -8.92530 -7.78577 -5.25604 -0.62925 -0.27743 1.27088 1.43435 1.48027 1.54341 1.56361 1.72094 1.99177 1.99479 2.48158 2.71656 2.99082 3.30891 3.40117 3.50762 3.63476 3.72984 3.77016 3.92308 4.01441 4.06893 4.12803 4.23312 4.39292 4.46426 4.47264 4.55469 4.60080 4.63622 4.65401 4.76478 4.87948 5.02151 5.07341 5.16386 5.22869 5.24673 5.26657 5.31640 5.43281 5.48168 5.57772 5.76904 5.87017 6.07969 6.24516 6.28998 6.36134 6.68630 7.03848 7.11156 7.74531 8.37436 9.21951 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.013796 B = 0.002581 C = 0.002307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2029.098983 B =10846.428382 C =12134.261514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.093 4.093 3 H 0.097 0.903 4 C 0.134 3.866 5 N -0.627 5.627 6 C -0.240 4.240 7 H 0.088 0.912 8 C -0.072 4.072 9 N -0.951 5.951 10 Si 0.984 3.016 11 H -0.273 1.273 12 H -0.297 1.297 13 H -0.275 1.275 14 C 0.158 3.842 15 C 0.133 3.867 16 H 0.072 0.928 17 N -0.677 5.677 18 C 0.561 3.439 19 O -0.571 6.571 20 C 0.101 3.899 21 C -0.151 4.151 22 C 0.174 3.826 23 N -0.409 5.409 24 C -0.043 4.043 25 C -0.191 4.191 26 C -0.196 4.196 27 C -0.015 4.015 28 C -0.159 4.159 29 C 0.135 3.865 30 N -0.480 5.480 31 H 0.066 0.934 32 H 0.080 0.920 33 H 0.047 0.953 34 H 0.034 0.966 35 H 0.035 0.965 36 H 0.244 0.756 37 H -0.011 1.011 38 H 0.062 0.938 39 H 0.419 0.581 40 H 0.138 0.862 41 H 0.164 0.836 42 H 0.156 0.844 43 H 0.166 0.834 44 H 0.203 0.797 45 H 0.189 0.811 46 H 0.218 0.782 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.525 16.221 18.394 26.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.112 4.112 3 H 0.115 0.885 4 C 0.009 3.991 5 N -0.353 5.353 6 C -0.369 4.369 7 H 0.106 0.894 8 C -0.265 4.265 9 N -0.600 5.600 10 Si 0.812 3.188 11 H -0.199 1.199 12 H -0.223 1.223 13 H -0.201 1.201 14 C 0.032 3.968 15 C 0.027 3.973 16 H 0.090 0.910 17 N -0.327 5.327 18 C 0.346 3.654 19 O -0.450 6.450 20 C -0.036 4.036 21 C -0.175 4.175 22 C 0.072 3.928 23 N -0.082 5.082 24 C -0.168 4.168 25 C -0.215 4.215 26 C -0.220 4.220 27 C -0.140 4.140 28 C -0.180 4.180 29 C -0.025 4.025 30 N -0.193 5.193 31 H 0.085 0.915 32 H 0.099 0.901 33 H 0.067 0.933 34 H 0.052 0.948 35 H 0.053 0.947 36 H 0.054 0.946 37 H 0.007 0.993 38 H 0.080 0.920 39 H 0.257 0.743 40 H 0.156 0.844 41 H 0.181 0.819 42 H 0.174 0.826 43 H 0.184 0.816 44 H 0.220 0.780 45 H 0.206 0.794 46 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges -9.476 15.640 17.338 25.200 hybrid contribution 1.044 -1.309 0.253 1.693 sum -8.432 14.331 17.591 24.206 Atomic orbital electron populations 1.21698 0.91828 1.02097 1.03045 1.22378 0.97602 0.99024 0.92239 0.88510 1.21606 0.88636 0.93336 0.95541 1.44707 1.32159 1.50867 1.07575 1.19477 1.06525 1.17196 0.93660 0.89429 1.25754 1.00462 1.02633 0.97605 1.70122 1.30173 1.47089 1.12630 0.85066 0.77792 0.78638 0.77333 1.19905 1.22303 1.20097 1.21867 0.91712 0.98191 0.85051 1.22308 0.97646 0.92986 0.84379 0.90997 1.45516 1.71396 1.11517 1.04311 1.18281 0.76545 0.86839 0.83725 1.90792 1.51631 1.16043 1.86496 1.20593 1.00297 0.90998 0.91735 1.21686 1.02540 1.01893 0.91338 1.18177 0.97428 0.94006 0.83158 1.41719 1.55465 1.07377 1.03666 1.22286 1.11017 0.85519 0.97945 1.21398 1.07592 0.99529 0.92963 1.21433 1.08407 0.92297 0.99828 1.22604 1.08822 0.99670 0.82884 1.22509 1.01638 0.92403 1.01455 1.23507 0.91382 1.01582 0.85993 1.67594 1.12157 1.02331 1.37180 0.91505 0.90066 0.93343 0.94822 0.94675 0.94643 0.99278 0.91978 0.74291 0.84411 0.81870 0.82643 0.81607 0.77977 0.79371 0.76557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.27 9.16 71.98 0.66 -2.61 16 2 C -0.09 -3.07 3.19 -9.61 -0.03 -3.10 16 3 H 0.10 2.81 7.99 -2.39 -0.02 2.79 16 4 C 0.13 5.50 6.84 86.73 0.59 6.09 16 5 N -0.63 -33.70 3.40 -691.86 -2.35 -36.05 16 6 C -0.24 -13.93 10.27 84.03 0.86 -13.07 16 7 H 0.09 4.78 7.83 -2.91 -0.02 4.76 16 8 C -0.07 -4.31 5.49 84.86 0.47 -3.84 16 9 N -0.95 -60.60 10.09 21.65 0.22 -60.38 16 10 Si 0.98 47.57 29.55 68.60 2.03 49.60 16 11 H -0.27 -12.55 7.11 99.48 0.71 -11.84 16 12 H -0.30 -14.52 7.11 99.48 0.71 -13.82 16 13 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 14 C 0.16 8.44 5.58 86.85 0.48 8.93 16 15 C 0.13 5.45 2.81 46.38 0.13 5.58 16 16 H 0.07 3.27 7.54 -2.39 -0.02 3.25 16 17 N -0.68 -23.76 5.20 -438.51 -2.28 -26.04 16 18 C 0.56 21.15 7.81 86.89 0.68 21.83 16 19 O -0.57 -26.39 16.01 -3.74 -0.06 -26.45 16 20 C 0.10 2.98 6.75 41.86 0.28 3.26 16 21 C -0.15 -4.13 9.04 22.73 0.21 -3.92 16 22 C 0.17 3.58 6.65 38.36 0.26 3.83 16 23 N -0.41 -8.09 2.97 -346.09 -1.03 -9.12 16 24 C -0.04 -0.92 10.77 83.16 0.90 -0.02 16 25 C -0.19 -3.52 10.86 22.16 0.24 -3.28 16 26 C -0.20 -2.98 10.86 22.16 0.24 -2.74 16 27 C -0.02 -0.22 10.77 83.16 0.90 0.67 16 28 C -0.16 -2.05 9.53 22.54 0.21 -1.84 16 29 C 0.13 1.88 11.17 84.75 0.95 2.83 16 30 N -0.48 -11.08 9.54 -185.13 -1.77 -12.85 16 31 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 32 H 0.08 1.66 8.14 -2.38 -0.02 1.64 16 33 H 0.05 1.32 8.06 -2.39 -0.02 1.30 16 34 H 0.03 1.35 7.76 -2.39 -0.02 1.33 16 35 H 0.04 1.38 8.14 -2.38 -0.02 1.36 16 36 H 0.24 15.24 8.31 -92.70 -0.77 14.47 16 37 H -0.01 -0.61 8.14 -2.39 -0.02 -0.63 16 38 H 0.06 3.96 5.88 -2.39 -0.01 3.94 16 39 H 0.42 12.23 7.86 -92.71 -0.73 11.50 16 40 H 0.14 4.11 6.42 -2.91 -0.02 4.09 16 41 H 0.16 3.49 7.09 -2.91 -0.02 3.47 16 42 H 0.16 2.31 8.06 -2.91 -0.02 2.29 16 43 H 0.17 1.64 8.06 -2.91 -0.02 1.62 16 44 H 0.20 1.21 7.08 -2.91 -0.02 1.18 16 45 H 0.19 0.79 6.83 -2.91 -0.02 0.77 16 46 H 0.22 0.97 8.06 -2.91 -0.02 0.95 16 Total: -1.00 -81.88 381.02 3.06 -78.81 By element: Atomic # 1 Polarization: 23.59 SS G_CDS: 0.28 Total: 23.87 kcal Atomic # 6 Polarization: 10.58 SS G_CDS: 8.02 Total: 18.60 kcal Atomic # 7 Polarization: -137.23 SS G_CDS: -7.21 Total: -144.44 kcal Atomic # 8 Polarization: -26.39 SS G_CDS: -0.06 Total: -26.45 kcal Atomic # 14 Polarization: 47.57 SS G_CDS: 2.03 Total: 49.60 kcal Total: -81.88 3.06 -78.81 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001080741671.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.297 kcal (2) G-P(sol) polarization free energy of solvation -81.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.814 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds