Wall clock time and date at job start Sat Apr 11 2020 06:06:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 109.87036 * 2 1 4 4 C 1.54420 * 110.00675 * 238.90716 * 2 1 3 5 5 H 1.09009 * 110.72749 * 336.66062 * 4 2 1 6 6 N 1.46503 * 110.76287 * 99.96389 * 4 2 1 7 7 C 1.34773 * 120.00145 * 199.94079 * 6 4 2 8 8 O 1.21685 * 120.00326 * 355.47448 * 7 6 4 9 9 C 1.46707 * 119.99733 * 175.47291 * 7 6 4 10 10 C 1.36702 * 126.85622 * 1.72923 * 9 7 6 11 11 N 1.33317 * 107.83751 * 179.87212 * 10 9 7 12 12 C 1.30868 * 109.74230 * 0.40758 * 11 10 9 13 13 N 1.34742 * 109.13543 * 359.74743 * 12 11 10 14 14 C 1.40110 * 126.50508 * 179.97438 * 13 12 11 15 15 C 1.38854 * 120.06598 * 123.50794 * 14 13 12 16 16 C 1.38118 * 119.92867 * 179.76257 * 15 14 13 17 17 C 1.38274 * 120.07080 * 0.49541 * 16 15 14 18 18 C 1.38289 * 120.13438 * 359.76085 * 17 16 15 19 19 C 1.38108 * 120.06449 * 359.97438 * 18 17 16 20 20 C 1.55151 * 102.89651 * 218.32177 * 4 2 1 21 21 C 1.54917 * 101.61539 * 35.49966 * 20 4 2 22 22 N 1.47021 * 109.88003 * 121.01385 * 2 1 3 23 23 C 1.36944 * 125.64767 * 298.47164 * 22 2 1 24 24 H 1.07999 * 119.99935 * 0.02562 * 23 22 2 25 25 C 1.38805 * 119.99825 * 180.02562 * 23 22 2 26 26 N 1.31625 * 120.00292 * 0.02562 * 25 23 22 27 27 Si 1.86805 * 119.99991 * 180.02562 * 25 23 22 28 28 H 1.48495 * 109.47080 * 89.99837 * 27 25 23 29 29 H 1.48503 * 109.47227 * 210.00067 * 27 25 23 30 30 H 1.48504 * 109.46928 * 329.99800 * 27 25 23 31 31 H 1.09009 * 109.47283 * 300.44094 * 1 2 3 32 32 H 1.09004 * 109.47144 * 60.44106 * 1 2 3 33 33 H 1.08999 * 109.47011 * 180.44239 * 1 2 3 34 34 H 0.96996 * 119.99617 * 19.94174 * 6 4 2 35 35 H 1.08001 * 126.08005 * 359.97438 * 10 9 7 36 36 H 1.07992 * 125.43722 * 179.72648 * 12 11 10 37 37 H 1.07998 * 120.03456 * 359.97438 * 15 14 13 38 38 H 1.07998 * 119.96304 * 180.22964 * 16 15 14 39 39 H 1.07999 * 119.93553 * 179.74144 * 17 16 15 40 40 H 1.08000 * 119.96413 * 179.97438 * 18 17 16 41 41 H 1.08000 * 120.03208 * 179.97438 * 19 18 17 42 42 H 1.09004 * 111.00346 * 277.40810 * 20 4 2 43 43 H 1.08998 * 111.00663 * 153.59455 * 20 4 2 44 44 H 1.08997 * 110.36413 * 81.80948 * 21 20 4 45 45 H 1.09000 * 110.36659 * 204.13504 * 21 20 4 46 46 H 0.97001 * 119.99723 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 6 2.0584 -0.7493 -1.2425 5 1 1.3107 -1.4478 -1.6187 6 7 2.4588 0.1959 -2.2878 7 6 2.5623 -0.2174 -3.5664 8 8 2.4039 -1.3922 -3.8409 9 6 2.8660 0.7493 -4.6274 10 6 3.1017 2.0872 -4.4748 11 7 3.3391 2.6003 -5.6821 12 6 3.2569 1.6583 -6.5868 13 7 2.9650 0.4899 -5.9826 14 6 2.7936 -0.7520 -6.6082 15 6 3.5679 -1.8381 -6.2222 16 6 3.3932 -3.0623 -6.8375 17 6 2.4556 -3.2044 -7.8438 18 6 1.6867 -2.1233 -8.2340 19 6 1.8529 -0.8980 -7.6188 20 6 3.2917 -1.5108 -0.6893 21 6 2.8175 -1.8762 0.7395 22 7 2.0300 -0.7124 1.1849 23 6 1.8025 -0.3537 2.4868 24 1 1.2096 0.5210 2.7102 25 6 2.3339 -1.1142 3.5192 26 7 3.0569 -2.1798 3.2470 27 14 2.0230 -0.6253 5.2952 28 1 0.7838 -1.2842 5.7803 29 1 3.1716 -1.0518 6.1344 30 1 1.8665 0.8489 5.3826 31 1 -0.3634 0.5207 0.8861 32 1 -0.3634 0.5070 -0.8939 33 1 -0.3633 -1.0276 0.0079 34 1 2.6493 1.1191 -2.0595 35 1 3.0979 2.6313 -3.5419 36 1 3.3998 1.7955 -7.6484 37 1 4.3036 -1.7265 -5.4395 38 1 3.9926 -3.9083 -6.5352 39 1 2.3238 -4.1616 -8.3262 40 1 0.9554 -2.2374 -9.0206 41 1 1.2523 -0.0540 -7.9243 42 1 4.1681 -0.8635 -0.6564 43 1 3.4927 -2.4074 -1.2755 44 1 2.1936 -2.7696 0.7152 45 1 3.6741 -2.0284 1.3962 46 1 3.4279 -2.7115 3.9685 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001088622966.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:33 Heat of formation + Delta-G solvation = 91.899551 kcal Electronic energy + Delta-G solvation = -29237.735264 eV Core-core repulsion = 25322.526646 eV Total energy + Delta-G solvation = -3915.208619 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.66241 -39.45136 -39.28100 -37.47996 -34.57468 -33.90551 -32.16255 -31.36878 -30.52475 -30.18283 -29.56004 -28.42452 -25.10710 -24.03256 -23.79164 -23.21473 -22.57318 -21.35612 -20.39261 -20.12035 -19.68801 -18.58007 -16.89736 -16.75332 -16.40345 -16.19902 -15.84634 -15.23708 -14.83368 -14.76124 -14.28720 -14.18545 -14.07145 -13.88864 -13.78948 -13.63014 -13.35976 -13.07022 -12.79884 -12.16006 -12.05270 -11.96247 -11.59521 -11.58368 -11.16310 -10.90723 -10.88145 -10.77036 -10.56488 -10.43046 -10.34596 -10.10567 -9.84827 -9.76435 -9.58185 -9.26267 -9.04714 -8.85710 -8.69076 -8.60389 -6.89843 -5.67330 -3.10415 0.62745 1.05304 1.31978 2.22693 2.64045 3.29362 3.34147 3.38795 3.39317 3.44181 3.45735 4.28065 4.45517 4.51726 4.54844 4.59854 4.78643 4.86293 5.03824 5.04487 5.19740 5.24556 5.39479 5.40165 5.51400 5.59574 5.61292 5.70654 5.78074 5.99305 6.08821 6.10123 6.16275 6.21302 6.24013 6.28436 6.31246 6.47391 6.49949 6.57595 6.69422 6.83638 6.95689 7.06787 7.48686 7.55616 7.60672 7.67339 7.83089 8.27004 8.33558 9.18582 9.79452 10.42862 11.35963 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.018614 B = 0.002623 C = 0.002435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1503.915204 B =10672.702011 C =11494.328163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.156 3.844 3 H 0.037 0.963 4 C 0.140 3.860 5 H 0.092 0.908 6 N -0.701 5.701 7 C 0.587 3.413 8 O -0.536 6.536 9 C -0.074 4.074 10 C 0.039 3.961 11 N -0.491 5.491 12 C 0.211 3.789 13 N -0.383 5.383 14 C 0.107 3.893 15 C -0.063 4.063 16 C -0.107 4.107 17 C -0.107 4.107 18 C -0.114 4.114 19 C -0.109 4.109 20 C -0.152 4.152 21 C 0.153 3.847 22 N -0.595 5.595 23 C -0.220 4.220 24 H 0.078 0.922 25 C -0.010 4.010 26 N -0.921 5.921 27 Si 0.914 3.086 28 H -0.289 1.289 29 H -0.290 1.290 30 H -0.281 1.281 31 H 0.055 0.945 32 H 0.038 0.962 33 H 0.051 0.949 34 H 0.400 0.600 35 H 0.183 0.817 36 H 0.213 0.787 37 H 0.127 0.873 38 H 0.132 0.868 39 H 0.128 0.872 40 H 0.131 0.869 41 H 0.128 0.872 42 H 0.062 0.938 43 H 0.062 0.938 44 H 0.014 0.986 45 H 0.109 0.891 46 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.102 2.773 -23.807 23.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.048 3.952 3 H 0.055 0.945 4 C 0.036 3.964 5 H 0.110 0.890 6 N -0.351 5.351 7 C 0.372 3.628 8 O -0.413 6.413 9 C -0.189 4.189 10 C -0.114 4.114 11 N -0.208 5.208 12 C -0.070 4.070 13 N -0.061 5.061 14 C 0.017 3.983 15 C -0.083 4.083 16 C -0.126 4.126 17 C -0.125 4.125 18 C -0.133 4.133 19 C -0.128 4.128 20 C -0.192 4.192 21 C 0.028 3.972 22 N -0.320 5.320 23 C -0.349 4.349 24 H 0.096 0.904 25 C -0.206 4.206 26 N -0.569 5.569 27 Si 0.745 3.255 28 H -0.217 1.217 29 H -0.217 1.217 30 H -0.207 1.207 31 H 0.074 0.926 32 H 0.057 0.943 33 H 0.070 0.930 34 H 0.234 0.766 35 H 0.200 0.800 36 H 0.229 0.771 37 H 0.145 0.855 38 H 0.150 0.850 39 H 0.146 0.854 40 H 0.149 0.851 41 H 0.146 0.854 42 H 0.081 0.919 43 H 0.081 0.919 44 H 0.032 0.968 45 H 0.127 0.873 46 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 0.190 2.550 -23.963 24.099 hybrid contribution -0.393 -0.119 1.229 1.296 sum -0.203 2.430 -22.734 22.864 Atomic orbital electron populations 1.22248 0.97816 1.01414 1.00050 1.20998 0.92612 0.94850 0.86786 0.94520 1.22189 0.97675 0.90534 0.86005 0.89018 1.45743 1.68876 1.14303 1.06170 1.16713 0.77577 0.86634 0.81843 1.90846 1.50751 1.17117 1.82630 1.21062 1.16656 0.96753 0.84400 1.22715 1.01487 0.90050 0.97164 1.70183 1.20421 1.30641 0.99563 1.25268 1.01992 0.79403 1.00301 1.42691 1.49831 1.07706 1.05825 1.17617 0.99342 0.84170 0.97155 1.21037 0.97643 0.91793 0.97794 1.21070 0.98674 0.96826 0.96008 1.21304 0.95418 0.98948 0.96839 1.20985 0.99892 0.92089 1.00289 1.21024 0.96627 0.98839 0.96349 1.23399 0.96664 0.99385 0.99702 1.21956 0.97340 0.88380 0.89534 1.44485 1.59093 1.28394 1.00031 1.19020 1.27065 1.08308 0.80463 0.90419 1.24787 1.00301 0.97405 0.98061 1.69795 1.38954 1.18010 1.30157 0.86082 0.77244 0.77752 0.84457 1.21651 1.21671 1.20689 0.92579 0.94304 0.92956 0.76557 0.80026 0.77092 0.85458 0.85049 0.85386 0.85133 0.85425 0.91936 0.91930 0.96779 0.87286 0.93687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.84 9.15 37.16 0.34 -2.50 16 2 C 0.16 3.05 3.47 -66.90 -0.23 2.82 16 3 H 0.04 0.70 7.69 -51.93 -0.40 0.30 16 4 C 0.14 2.49 2.73 -66.05 -0.18 2.31 16 5 H 0.09 1.75 7.49 -51.92 -0.39 1.36 16 6 N -0.70 -10.26 5.19 -53.27 -0.28 -10.54 16 7 C 0.59 8.99 7.76 -12.84 -0.10 8.89 16 8 O -0.54 -9.62 13.73 5.20 0.07 -9.55 16 9 C -0.07 -0.98 6.79 -82.07 -0.56 -1.54 16 10 C 0.04 0.46 11.37 -17.46 -0.20 0.26 16 11 N -0.49 -5.98 11.20 -14.36 -0.16 -6.15 16 12 C 0.21 2.18 12.31 -90.34 -1.11 1.07 16 13 N -0.38 -4.58 2.85 -58.64 -0.17 -4.75 16 14 C 0.11 1.24 5.34 -83.62 -0.45 0.79 16 15 C -0.06 -0.75 7.78 -39.40 -0.31 -1.06 16 16 C -0.11 -1.05 10.04 -39.61 -0.40 -1.45 16 17 C -0.11 -0.88 10.04 -39.55 -0.40 -1.27 16 18 C -0.11 -0.91 10.04 -39.61 -0.40 -1.31 16 19 C -0.11 -1.02 9.78 -39.40 -0.39 -1.41 16 20 C -0.15 -2.97 6.76 -24.58 -0.17 -3.13 16 21 C 0.15 3.67 5.89 -2.53 -0.01 3.66 16 22 N -0.59 -14.57 3.13 -162.52 -0.51 -15.08 16 23 C -0.22 -5.91 9.87 -15.06 -0.15 -6.06 16 24 H 0.08 2.01 7.83 -52.49 -0.41 1.60 16 25 C -0.01 -0.27 5.49 -17.43 -0.10 -0.37 16 26 N -0.92 -26.40 10.09 55.49 0.56 -25.84 16 27 Si 0.91 21.72 29.55 -169.99 -5.02 16.70 16 28 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 29 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 30 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 31 H 0.06 1.06 8.02 -51.92 -0.42 0.64 16 32 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 34 H 0.40 4.89 7.25 -40.82 -0.30 4.59 16 35 H 0.18 1.69 7.45 -52.49 -0.39 1.30 16 36 H 0.21 1.32 8.06 -52.49 -0.42 0.90 16 37 H 0.13 1.65 7.79 -52.49 -0.41 1.24 16 38 H 0.13 1.06 8.06 -52.49 -0.42 0.63 16 39 H 0.13 0.73 8.06 -52.49 -0.42 0.31 16 40 H 0.13 0.70 8.06 -52.49 -0.42 0.28 16 41 H 0.13 0.98 8.06 -52.49 -0.42 0.56 16 42 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 43 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 44 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 45 H 0.11 2.94 5.87 -51.93 -0.30 2.64 16 46 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 LS Contribution 380.38 15.07 5.73 5.73 Total: -1.00 -32.68 380.38 -10.95 -43.63 By element: Atomic # 1 Polarization: 12.50 SS G_CDS: -6.38 Total: 6.12 kcal Atomic # 6 Polarization: 4.50 SS G_CDS: -4.80 Total: -0.29 kcal Atomic # 7 Polarization: -61.79 SS G_CDS: -0.55 Total: -62.34 kcal Atomic # 8 Polarization: -9.62 SS G_CDS: 0.07 Total: -9.55 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -32.68 -10.95 -43.63 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088622966.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.532 kcal (2) G-P(sol) polarization free energy of solvation -32.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.632 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds